BAC Information

Click to search

BAC

Clone NameB6Ng01-180C18
Chromosome12 (Build37)
Map Location 66,427,724 - 66,555,136
singlet/doubletdoublet
Overlap genenone
Upstream geneEG623046, LOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
Downstream geneLOC100040700, EG238217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180C18.bB6Ng01-180C18.g
ACCGA006681GA006682
length861,108
definitionB6Ng01-180C18.b B6Ng01-180C18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,427,724 - 66,427,809)(66,554,020 - 66,555,136)
sequence
tactaaggactgaagccaatctgagagctcacatggtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtatgtgtgtgtgtgagtgtg

gaattcaatttaaagtcttttcaacaaaaaatgtgccaagttgatgattc
tgtaatctaatgtttaaaaaatactttgactttataatattaatcatttg
gatataaaaatgtattgtttaaattataaatgaaagaaagagatagtgtg
agtcttagctaaattggataaattcttcaatgtaccattatgtaaaagtg
caatgaagattctagaaatgtttgtaccagtttttaagctggtgtgataa
aattactcatgtagaagcaagatgtctttaaaatacttgtcctaagactc
acctgtgaatttgaactgtaacacacaaatagtggacatttttattaaaa
tttaccccacttaaaaaatatatatcaaataggaatgttaagtgggaatt
tatccaacaagtcatggaaattactaagattaaaaaaattaacaaaagcc
aaaggttgcaaattaggagcaaaggtctcctcagctatctgcatggtgat
tttctgagctgagaagaatgttaaatgtattggtcttgcacaccaccagg
ggagcaacctctgtattcaatggaatgctgatactcagaagaaaggcgca
tcttcaaatataaatcaatcggggagaacgatacaccctcaatgtttatt
tttctgtgttgtagtctgtcaaaagcacttagatatatacaactagatat
acctgtattgtactagcaaatgttaattactgatgtatcctggtatttat
aaaatattttctgggtgattccccatcagtatctttaggcgggaaggttg
aagtttcctggaatgtgggtctttgcaaaaacaagacattaaaaacctgc
tccagagaactcaatcaccaagagctaacgacgggagagggagagtccca
ggaaaatattagttctttttctgtgcagggtgcactgtgcttgctctcta
ttcactccatgaatgcttcaattttgaaatttaagattttttgtgaattt
taagtatactaacgaagaggttacagacaatttgagtatgtagcctgact
agagcatgtctcatcctagaatgaccaagttgatgagaaaacgaaatatc
actgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_66427724_66427809
seq2: B6Ng01-180C18.b_51_136

seq1  TACTAAGGACTGAAGCCAATCTGAGAGCTCACATGGTGTGTGTGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGGACTGAAGCCAATCTGAGAGCTCACATGGTGTGTGTGTGTGTG  50

seq1  TGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTG  86
      |||||||||||||||||||||||||||||| |||||
seq2  TGTGTGTGTGTGTGTGTATGTGTGTGTGTGAGTGTG  86


seq1: chr12_66554020_66555136
seq2: B6Ng01-180C18.g_63_1170 (reverse)

seq1  TACACAGTGATATTTTCGTTTTTCTCATCAAACTTTGGGTTCAATTCTAA  50
      |||||||||||| ||||| |||||||||| |||||  |||   ||||| |
seq2  TACACAGTGATA-TTTCG-TTTTCTCATC-AACTT--GGT--CATTCT-A  42

seq1  GGATGGAGACATGCTCTAGTTCAGGGCTACATACTCAAATTGTCTGTAAC  100
      |||| |||||||||||||| ||| ||||||||||||||||||||||||||
seq2  GGAT-GAGACATGCTCTAG-TCA-GGCTACATACTCAAATTGTCTGTAAC  89

seq1  CTCTTCGTTAGTATAACTTAAAATTCACAAAAAATTCTTAAATTTCAAAA  150
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  CTCTTCGTTAGTAT-ACTTAAAATTCACAAAAAA-TCTTAAATTTCAAAA  137

seq1  -TGAAGCATTCATGGAGTGAATAGAGAGCAAGCACAGTGCACCCTGCACA  199
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCATTCATGGAGTGAATAGAGAGCAAGCACAGTGCACCCTGCACA  187

seq1  G-AAAAGAACTAATATTTTCCTGGGACTCTCCCTCTCCCGTCGTTAGCTC  248
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAACTAATATTTTCCTGGGACTCTCCCTCTCCCGTCGTTAGCTC  237

seq1  TTGGTGATTGAGTTCTCTGGAGCAGG-TTTTAATGTCTTGTTTTTGCAAA  297
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTGGTGATTGAGTTCTCTGGAGCAGGTTTTTAATGTCTTGTTTTTGCAAA  287

seq1  GACCCACATTCCAGG-AACTTCAACCTTCCCGCCTAAAGATACTGATGGG  346
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GACCCACATTCCAGGAAACTTCAACCTTCCCGCCTAAAGATACTGATGGG  337

seq1  GAATCACCCAGAAAATATTTTATAAATACCAGGATACATCAGTAATTAAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACCCAGAAAATATTTTATAAATACCAGGATACATCAGTAATTAAC  387

seq1  ATTTGCTAGTACAATACAGGTATATCTAGTTGTATATATCTAAGTGCTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTAGTACAATACAGGTATATCTAGTTGTATATATCTAAGTGCTTT  437

seq1  TGACAGACTACAACACAGAAAAATAAACATTGAGGGTGTATCGTTCTCCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGACTACAACACAGAAAAATAAACATTGAGGGTGTATCGTTCTCCC  487

seq1  CGATTGATTTATATTTGAAGATGCGCCTTTCTTCTGAGTATCAGCATTCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTGATTTATATTTGAAGATGCGCCTTTCTTCTGAGTATCAGCATTCC  537

seq1  ATTGAATACAGAGGTTGCTCCCCTGGTGGTGTGCAAGACCAATACATTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATACAGAGGTTGCTCCCCTGGTGGTGTGCAAGACCAATACATTTA  587

seq1  ACATTCTTCTCAGCTCAGAAAATCACCATGCAGATAGCTGAGGAGACCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTCTCAGCTCAGAAAATCACCATGCAGATAGCTGAGGAGACCTT  637

seq1  TGCTCCTAATTTGCAACCTTTGGCTTTTGTTAATTTTTTTAATCTTAGTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTAATTTGCAACCTTTGGCTTTTGTTAATTTTTTTAATCTTAGTA  687

seq1  ATTTCCATGACTTGTTGGATAAATTCCCACTTAACATTCCTATTTGATAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCATGACTTGTTGGATAAATTCCCACTTAACATTCCTATTTGATAT  737

seq1  ATATTTTTTAAGTGGGGTAAATTTTAATAAAAATGTCCACTATTTGTGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTTAAGTGGGGTAAATTTTAATAAAAATGTCCACTATTTGTGTG  787

seq1  TTACAGTTCAAATTCACAGGTGAGTCTTAGGACAAGTATTTTAAAGACAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTCAAATTCACAGGTGAGTCTTAGGACAAGTATTTTAAAGACAT  837

seq1  CTTGCTTCTACATGAGTAATTTTATCACACCAGCTTAAAAACTGGTACAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCTACATGAGTAATTTTATCACACCAGCTTAAAAACTGGTACAA  887

seq1  ACATTTCTAGAATCTTCATTGCACTTTTACATAATGGTACATTGAAGAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTAGAATCTTCATTGCACTTTTACATAATGGTACATTGAAGAAT  937

seq1  TTATCCAATTTAGCTAAGACTCACACTATCTCTTTCTTTCATTTATAATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAATTTAGCTAAGACTCACACTATCTCTTTCTTTCATTTATAATT  987

seq1  TAAACAATACATTTTTATATCCAAATGATTAATATTATAAAGTCAAAGTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATACATTTTTATATCCAAATGATTAATATTATAAAGTCAAAGTA  1037

seq1  TTTTTTAAACATTAGATTACAGAATCATCAACTTGGCACATTTTTTGTTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAACATTAGATTACAGAATCATCAACTTGGCACATTTTTTGTTG  1087

seq1  AAAAGACTTTAAATTGAATTC  1117
      |||||||||||||||||||||
seq2  AAAAGACTTTAAATTGAATTC  1108


| Home | SequenceCutter | Blast | Download |