BAC Information

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BAC

Clone NameB6Ng01-181J03
Chromosome12 (Build37)
Map Location 107,851,180 - 107,984,628
singlet/doubletdoublet
Overlap genenone
Upstream gene2410024A21Rik, 4933433P14Rik, Ak7, Papola, Vrk1, LOC100040386, LOC100040404, LOC100040420, 1700121N20Rik, LOC100041191, LOC100040451
Downstream geneLOC673604, LOC100040484, LOC382635, LOC100041251, LOC100040497, LOC668151
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181J03.bB6Ng01-181J03.g
ACCGA007695GA007696
length1,1271,063
definitionB6Ng01-181J03.b B6Ng01-181J03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,851,180 - 107,852,312)(107,983,570 - 107,984,628)
sequence
gaattctttatttttaatgtggggtttttgttatgcagtataaaacttac
catcatttttcttgtatgactctgagtgatagaattgccattaatagatt
gatccctccatttgtgccaaggcagaggagaaacccactttagcccagcc
ccacacagagcagggctctctccggaaccatggatgtgtacaaaatatta
attaaaacttctggtgtatttcatcatgaatgcattacttggcatttctc
aagtgaactgtgtgcggtgaactctgttgggggcagaggtcactcgagag
ttaaccgatgtccctaaaccagctcttgtcagagggcaaaagtgaagaag
ccaagagataaaaccatagcgatttataaatatctacacaaagcaaggag
ctcccatggcgattcactggtggaccgagggtttctcggttacatttggt
ttcttggcgtggcatttcccatttaaattcctcatttcctgcaaacacag
ccacacaaaggagagacaaaatgctctgcctcactgtttcttctttaata
cacacggctacgtatgcataagcacgcacatttgcacacataggtatttg
aattagcggggacggagggaggtgactgactggctctggcattgaagccc
ctttgactttcacaaggtgctaaaagtcagctggggtctcagctctgaca
aatttgcatctctttgaatatgacgcttgaaaaaccccagcgatagatta
aattttgccaaggagaaaatgagagagaggctcccatctctcaggtctgc
tgggaggatctttatggttgatttacttttttaaaataaatgtttcttta
tgtgtttccttcagtccctgcccaggctgcctctgtcatacaaaactgta
acttctggcggctcctatcagcttgctaacagtaaagtcaacctggtctc
aagtacaaggtgaagggatatttcaatctcagctgcatgggacccttctg
tgtttttctgattaaattttcagcaaacttggcataaactctacctgaca
tgacttctaaatattatgctgtcttgcaactcgaagaggattgatttgag
tgtctgtcacctaatctccagatgatc

gaattcatgaactcagaagaaatgctagttacaggaccaaagaggcagtc
atttgggccattagggaaaagacaattttcagatttttgaaggaggcatg
ggtgatcctgctggtgtagggtttagatctacaggattcatccttgtttc
ttggaaagccaaaagaagagtgtggtgatttactatccagtccgattgct
cagaaggcagctggggcagttcaaatcaacaacaggaggattctaggaag
ctgctctacaaggaaaagggaagccccctgaatgcataaagacaaacaca
tgcaagccaaaatctagatgtaggccccgccttgaaatacaggctttggg
aaccctgaagtagtcatctgcagttctgcccagaggggacaggctgagtc
ctagaggggtgagcagttttaccttctgtagaaaactaagctaaactttt
atacctgtgctttgtggttgtgttcatttatttattcattcattcactca
tttatttgactcaccatcccacaactggtatgcaagccatggtgctgtcc
tctgtcataattcactataaccctgacctgtgacactgtgtgtgtgatat
cccttgaacctcctcaacactcttctctccctgttccatggagtgactaa
gggatttggacaccaccacagagctgacacatagatattcaagttacagg
agcccagagccaggcttctccaaacttcctttgccttccttttcttcaca
caaaggtagaattattccagctctgcgaagtggttctctggtcaagtaca
tggggtaagaatttcatgctaggccctgtgttttaatgtttcaactttgt
gactttaaaaacatgcaaggttgcaacatctagaatccctggctgaaagg
cttgtagtaagcattaggtggtagtgacatgaacacatacttcttggttt
cttacggaggaacattataagaccatttttctaattagcttcacttatca
agtttgaccacagcccaacaggcatttgagggagttttaggtggggaatg
ctcaatcatattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_107851180_107852312
seq2: B6Ng01-181J03.b_44_1170

seq1  GAATTCTTTATTTTTAATGTGGGGTTTTTGTTATGCAGTATAAAACTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTTTTAATGTGGGGTTTTTGTTATGCAGTATAAAACTTAC  50

seq1  CATCATTTTTCTTGTATGACTCTGAGTGATAGAATTGCCATTAATAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTTTCTTGTATGACTCTGAGTGATAGAATTGCCATTAATAGATT  100

seq1  GATCCCTCCATTTGTGCCAAGGCAGAGGAGAAACCCACTTTAGCCCAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTCCATTTGTGCCAAGGCAGAGGAGAAACCCACTTTAGCCCAGCC  150

seq1  CCACACAGAGCAGGGCTCTCTCCGGAACCATGGATGTGTACAAAATATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAGAGCAGGGCTCTCTCCGGAACCATGGATGTGTACAAAATATTA  200

seq1  ATTAAAACTTCTGGTGTATTTCATCATGAATGCATTACTTGGCATTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACTTCTGGTGTATTTCATCATGAATGCATTACTTGGCATTTCTC  250

seq1  AAGTGAACTGTGTGCGGTGAACTCTGTTGGGGGCAGAGGTCACTCGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAACTGTGTGCGGTGAACTCTGTTGGGGGCAGAGGTCACTCGAGAG  300

seq1  TTAACCGATGTCCCTAAACCAGCTCTTGTCAGAGGGCAAAAGTGAAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCGATGTCCCTAAACCAGCTCTTGTCAGAGGGCAAAAGTGAAGAAG  350

seq1  CCAAGAGATAAAACCATAGCGATTTATAAATATCTACACAAAGCAAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGATAAAACCATAGCGATTTATAAATATCTACACAAAGCAAGGAG  400

seq1  CTCCCATGGCGATTCACTGGTGGACCGAGGGTTTCTCGGTTACATTTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATGGCGATTCACTGGTGGACCGAGGGTTTCTCGGTTACATTTGGT  450

seq1  TTCTTGGCGTGGCATTTCCCATTTAAATTCCTCATTTCCTGCAAACACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGCGTGGCATTTCCCATTTAAATTCCTCATTTCCTGCAAACACAG  500

seq1  CCACACAAAGGAGAGACAAAATGCTCTGCCTCACTGTTTCTTCTTTAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAAAGGAGAGACAAAATGCTCTGCCTCACTGTTTCTTCTTTAATA  550

seq1  CACACGGCTACGTATGCATAAGCACGCACATTTGCACACATAGGTATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGGCTACGTATGCATAAGCACGCACATTTGCACACATAGGTATTTG  600

seq1  AATTAGCGGGGACGGAGGGAGGTGACTGACTGGCTCTGGCATTGAAGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCGGGGACGGAGGGAGGTGACTGACTGGCTCTGGCATTGAAGCCC  650

seq1  CTTTGACTTTCACAAGGTGCTAAAAGTCAGCTGGGGTCTCAGCTCTGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACTTTCACAAGGTGCTAAAAGTCAGCTGGGGTCTCAGCTCTGACA  700

seq1  AATTTGCATCTCTTTGAATATGACGCTTGAAAAACCCCAGCGATAGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCATCTCTTTGAATATGACGCTTGAAAAACCCCAGCGATAGATTA  750

seq1  AATTTTGCCAAGGAGAAAATGAGAGAGAGGCTCCCATCTCTCAGGTCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGCCAAGGAGAAAATGAGAGAGAGGCTCCCATCTCTCAGGTCTGC  800

seq1  TGGGAGGATCTTTATGGTTGATTTACTTTTTTAAAATAAATGTTTCTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGATCTTTATGGTTGATTTACTTTTTTAAAATAAATGTTTCTTTA  850

seq1  TGTGTTTCCTTCAGTCCCTGCCCAGGCTGCCTCTGTCATAC-AAACTGTA  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTGTTTCCTTCAGTCCCTGCCCAGGCTGCCTCTGTCATACAAAACTGTA  900

seq1  ACTTCTGGCGGCTCCTATCAGCTTGCTAACAGTAAAGTCAACCTGGTCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGGCGGCTCCTATCAGCTTGCTAACAGTAAAGTCAACCTGGTCTC  950

seq1  AAGTACAAGGTGAAGGGATATTTCAATCTCAGCTGCAT-GGACCC-TCTG  997
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  AAGTACAAGGTGAAGGGATATTTCAATCTCAGCTGCATGGGACCCTTCTG  1000

seq1  TG-TTTTCTGATTAAAATTTTCAAGCAAACCTTGGCATAAACTCTACCTG  1046
      || |||||||||| |||||||| |||||| ||||||||||||||||||||
seq2  TGTTTTTCTGATT-AAATTTTC-AGCAAA-CTTGGCATAAACTCTACCTG  1047

seq1  ACATGACTTCTAAAATAATTTATGCTGTC-TGCAAACCTCGGACAGAGGG  1095
      ||||||||||| |||||  |||||||||| |||||  ||||     || |
seq2  ACATGACTTCT-AAATA--TTATGCTGTCTTGCAA--CTCG----AAGAG  1088

seq1  GATTGATTTGAGTGTCTGTCACTATATCT-CAGATGATC  1133
      ||||||||||||||||||||||   |||| |||||||||
seq2  GATTGATTTGAGTGTCTGTCACCTAATCTCCAGATGATC  1127


seq1: chr12_107983570_107984628
seq2: B6Ng01-181J03.g_63_1125 (reverse)

seq1  CAATATGATTTGAGCAATTCCCCAACTAAAACTCCCTCAAATGCCTG-TG  49
      |||||||| |||||| |||||||| |||||||||||||||||||||| ||
seq2  CAATATGA-TTGAGC-ATTCCCCACCTAAAACTCCCTCAAATGCCTGTTG  48

seq1  GGCTGT-GTC-AACTTGAT-AGTGAAGCTAATTAG-AAAATGGTCTTATA  95
      |||||| ||| |||||||| ||||||||||||||| ||||||||||||||
seq2  GGCTGTGGTCAAACTTGATAAGTGAAGCTAATTAGAAAAATGGTCTTATA  98

seq1  ATGTTCCTCCGTAAGAAACCAAGAAGTATGTGTTCATGTCACTACCACCT  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCTCCGTAAGAAACCAAGAAGTATGTGTTCATGTCACTACCACCT  148

seq1  AATGCTTACTACAAGCCTTCCAGCCAGGGATTCTAGATGTTGCAACCTTG  195
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AATGCTTACTACAAGCCTTTCAGCCAGGGATTCTAGATGTTGCAACCTTG  198

seq1  CATGTTTTTAAAGTCACAAAGTTGAAACATTAAAACACA-GGCCTAGCAT  244
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CATGTTTTTAAAGTCACAAAGTTGAAACATTAAAACACAGGGCCTAGCAT  248

seq1  GAAATTCTTACCCCATGTACTTGACCAGAGAACCACTTCGCAGAGCTGGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTTACCCCATGTACTTGACCAGAGAACCACTTCGCAGAGCTGGA  298

seq1  ATAATTCTACCTTTGTGTGAAGAAAAGGAAGGCAAAGGAAGTTTGGAGAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCTACCTTTGTGTGAAGAAAAGGAAGGCAAAGGAAGTTTGGAGAA  348

seq1  GCCTGGCTCTGGGCTCCTGTAACTTGAATATCTATGTGTCAGCTCTGTGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCTCTGGGCTCCTGTAACTTGAATATCTATGTGTCAGCTCTGTGG  398

seq1  TGGTGTCCAAATCCCTTAGTCACTCCATGGAACAGGGAGAGAAGAGTGTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCCAAATCCCTTAGTCACTCCATGGAACAGGGAGAGAAGAGTGTT  448

seq1  GAGGAGGTTCAAGGGATATCACACACACAGTGTCACAGGTCAGGGTTATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGTTCAAGGGATATCACACACACAGTGTCACAGGTCAGGGTTATA  498

seq1  GTGAATTATGACAGAGGACAGCACCATGGCTTGCATACCAGTTGTGGGAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTATGACAGAGGACAGCACCATGGCTTGCATACCAGTTGTGGGAT  548

seq1  GGTGAGTCAAATAAATGAGTGAATGAATGAATAAATAAATGAACACAACC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTCAAATAAATGAGTGAATGAATGAATAAATAAATGAACACAACC  598

seq1  ACAAAGCACAGGTATAAAAGTTTAGCTTAGTTTTCTACAGAAGGTAAAAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCACAGGTATAAAAGTTTAGCTTAGTTTTCTACAGAAGGTAAAAC  648

seq1  TGCTCACCCCTCTAGGACTCAGCCTGTCCCCTCTGGGCAGAACTGCAGAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACCCCTCTAGGACTCAGCCTGTCCCCTCTGGGCAGAACTGCAGAT  698

seq1  GACTACTTCAGGGTTCCCAAAGCCTGTATTTCAAGGCGGGGCCTACATCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACTTCAGGGTTCCCAAAGCCTGTATTTCAAGGCGGGGCCTACATCT  748

seq1  AGATTTTGGCTTGCATGTGTTTGTCTTTATGCATTCAGGGGGCTTCCCTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGGCTTGCATGTGTTTGTCTTTATGCATTCAGGGGGCTTCCCTT  798

seq1  TTCCTTGTAGAGCAGCTTCCTAGAATCCTCCTGTTGTTGATTTGAACTGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGTAGAGCAGCTTCCTAGAATCCTCCTGTTGTTGATTTGAACTGC  848

seq1  CCCAGCTGCCTTCTGAGCAATCGGACTGGATAGTAAATCACCACACTCTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTGCCTTCTGAGCAATCGGACTGGATAGTAAATCACCACACTCTT  898

seq1  CTTTTGGCTTTCCAAGAAACAAGGATGAATCCTGTAGATCTAAACCCTAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGCTTTCCAAGAAACAAGGATGAATCCTGTAGATCTAAACCCTAC  948

seq1  ACCAGCAGGATCACCCATGCCTCCTTCAAAAATCTGAAAATTGTCTTTTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAGGATCACCCATGCCTCCTTCAAAAATCTGAAAATTGTCTTTTC  998

seq1  CCTAATGGCCCAAATGACTGCCTCTTTGGTCCTGTAACTAGCATTTCTTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGGCCCAAATGACTGCCTCTTTGGTCCTGTAACTAGCATTTCTTC  1048

seq1  TGAGTTCATGAATTC  1059
      |||||||||||||||
seq2  TGAGTTCATGAATTC  1063


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