BAC Information

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BAC

Clone NameB6Ng01-186G16
Chromosome12 (Build37)
Map Location 61,753,689 - 61,871,466
singlet/doubletdoublet
Overlap genenone
Upstream geneEG622488, LOC665665, Ppia-ps12_475.1
Downstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186G16.bB6Ng01-186G16.g
ACCGA011267GA011268
length9861,081
definitionB6Ng01-186G16.b B6Ng01-186G16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,753,689 - 61,754,516)(61,870,434 - 61,871,466)
sequence
gaattctttttttttttttttttttttttacaaactattagttttagcta
aaaaatatttaccatttgagaatttcaccctggtacataatatttttaaa
caaatatgttcccgagtttttctcctctaatttcttctccctgcccctca
aaaatatcccaattcaatttcatgtgtttcaccaccaccttttctaatct
actgaggacatttacagctgctaatttgttaatgggttaccaagccacct
actgaaccacagaaagccttaggggacaacttgtggaaaacaaactctcc
ctttacaagtagccaatctgtaggcttcacattgtctagcttgatcttgc
tcaggtcttgtgagtactgtcagaggtcctttgatataatatgtgtatct
gcctttggttcttagcatctttctgtcttctctttctgagccttggaaac
atgagatgtaacatatagatttgccatttagtgctctacactgtgcctac
tctctctcattctatgcgtgctgcctggttgtgggactctgtattaatca
ctatctattataaaaaggagtttctctaatgtgggtggatagattcacta
atctatggatataatgaaatgtcattaggaattggtttaatgccatgata
atttagaaaagtatagttgtaggttctttcttggagcctattagttctcc
aggcacaggttctttctgaaaaggacagggcatgaatttcctcctgcaaa
gtaggtcttaaatccaagcataaatatgttggttactgccataacatttg
taacactattgcaccagtaggcatatctcaccaggtcagtcattattata
gctcactgggttcacagctgtcttagaccaatgatgatttttctcctcca
gtatcatgaagaacaccctctagcactctagctagaggaagactttcctg
ctgatatgaagcctccaggctgatacctactagatt
gaattcaaattgatccattcctatctcctcgtactaaggtataatctaag
tggattaaggaactccacataaaaccagagacactaaaacttattgagga
gaaagtagggacaaccctcgaagatatgagtacaggggaaaaattcctga
atagaacagcaatggcttgtgttgtaagatcgagaatctacaaatgggac
ctaataaaattgcaaagcttctgcaaggcaaaagacactgtcaataagac
aaaaaggccaccaacagattgggaaaggatctttacctatcctaaatcag
ataggggactaatatccaatatatataaagaactcaagaaggtggactcc
agaaaatcaaataaccccattaaaaatggggctcagacctgaacaaagaa
ttctcacctgaggaataccgaatagcagagaagcacctgaaaaaatgttc
aacatccttaatcatcagggaaatgcaaatcaaaacaaccttgagattcc
acctcacagcagttagaatggctaagatcataagatctcaaaggagccaa
aaaaaatcaagaaataaatctatacatgcagaactctaattttattttat
ttttttaaagtcaatgtaaacattttttttattattgggtataaacaaga
gaaattcttcaagtttttgactcatgtgcatcataagtacatgttcaggt
atgttctggttactacaattactaaaacacaaaattgttaacatgaataa
tagaaaactactatagaagtaattattggtatctatgactagacagccaa
tgccaaatttggtgtaaattaagagctttttgggtatataaatgatatct
tcttactatgtgctcatgtggtagacagaaaaaaaaaattccccttccac
caggctctttaggagtaataaaacaattctggatgccctcagtctttcat
acctgtattgatttgaatatgcatgaccccatgagaaatgacagttattc
agaaggtctgcccatttttgccaggatgttcattcacctggaggggaata
gggttgaagccttctgcctataccaagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_61753689_61754516
seq2: B6Ng01-186G16.b_42_871

seq1  GAATTC--TTTTTTTTTTTTTTTTTTTTTACAAACTATTAGTTTTAGCTA  48
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTTTTTTTTTTTTTTTTTACAAACTATTAGTTTTAGCTA  50

seq1  AAAAATATTTACCATTTGAGAATTTCACCCTGGTACATAATATTTTTAAA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTTACCATTTGAGAATTTCACCCTGGTACATAATATTTTTAAA  100

seq1  CAAATATGTTCCCGAGTTTTTCTCCTCTAATTTCTTCTCCCTGCCCCTCA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGTTCCCGAGTTTTTCTCCTCTAATTTCTTCTCCCTGCCCCTCA  150

seq1  AAAATATCCCAATTCAATTTCATGTGTTTCACCACCACCTTTTCTAATCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCCCAATTCAATTTCATGTGTTTCACCACCACCTTTTCTAATCT  200

seq1  ACTGAGGACATTTACAGCTGCTAATTTGTTAATGGGTTACCAAGCCACCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGACATTTACAGCTGCTAATTTGTTAATGGGTTACCAAGCCACCT  250

seq1  ACTGAACCACAGAAAGCCTTAGGGGACAACTTGTGGAAAACAAACTCTCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACCACAGAAAGCCTTAGGGGACAACTTGTGGAAAACAAACTCTCC  300

seq1  CTTTACAAGTAGCCAATCTGTAGGCTTCACATTGTCTAGCTTGATCTTGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAAGTAGCCAATCTGTAGGCTTCACATTGTCTAGCTTGATCTTGC  350

seq1  TCAGGTCTTGTGAGTACTGTCAGAGGTCCTTTGATATAATATGTGTATCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCTTGTGAGTACTGTCAGAGGTCCTTTGATATAATATGTGTATCT  400

seq1  GCCTTTGGTTCTTAGCATCTTTCTGTCTTCTCTTTCTGAGCCTTGGAAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGGTTCTTAGCATCTTTCTGTCTTCTCTTTCTGAGCCTTGGAAAC  450

seq1  ATGAGATGTAACATATAGATTTGCCATTTAGTGCTCTACACTGTGCCTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGTAACATATAGATTTGCCATTTAGTGCTCTACACTGTGCCTAC  500

seq1  TCTCTCTCATTCTATGCGTGCTGCCTGGTTGTGGGACTCTGTATTAATCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCATTCTATGCGTGCTGCCTGGTTGTGGGACTCTGTATTAATCA  550

seq1  CTATCTATTATAAAAAGGAGTTTCTCTAATGTGGGTGGATAGATTCACTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATTATAAAAAGGAGTTTCTCTAATGTGGGTGGATAGATTCACTA  600

seq1  ATCTATGGATATAATGAAATGTCATTAGGAATTGGTTTAATGCCATGATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGGATATAATGAAATGTCATTAGGAATTGGTTTAATGCCATGATA  650

seq1  ATTTAGAAAAGTATAGTTGTAGGTTCTTTCTTGGAGCCTATTAGTTCTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAAAAGTATAGTTGTAGGTTCTTTCTTGGAGCCTATTAGTTCTCC  700

seq1  AGGCACAGGTTCTTTCTGAAAAGGACAGGGCATGAATTTCCTCCTGCAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGGTTCTTTCTGAAAAGGACAGGGCATGAATTTCCTCCTGCAAA  750

seq1  GTAGGTCTTAAATCCAAGCATAAATATGTTGGTTACTGCCATAACATTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTCTTAAATCCAAGCATAAATATGTTGGTTACTGCCATAACATTTG  800

seq1  TAACACTATTGCACCAGTAGGCATATCTCA  828
      ||||||||||||||||||||||||||||||
seq2  TAACACTATTGCACCAGTAGGCATATCTCA  830

seq1: chr12_61870434_61871466
seq2: B6Ng01-186G16.g_96_1145 (reverse)

seq1  TCTTCT--GTATAGGCAGA--GCTTCAAACCTA-TCCCCTC--AGTG-AT  42
      ||||||  |||||||||||  ||||||| |||| |||||||   ||| ||
seq2  TCTTCTTGGTATAGGCAGAAGGCTTCAACCCTATTCCCCTCCAGGTGAAT  50

seq1  GAACATCCT-GCAAAAATGGCCAGACCTTCTGA--TACTGTCATTTCTCA  89
      ||||||||| |||||||||| ||||||||||||   ||||||||||||||
seq2  GAACATCCTGGCAAAAATGGGCAGACCTTCTGAATAACTGTCATTTCTCA  100

seq1  T-GGGTCATGCATATTCAAATCAATACAGGTATG-AAGACTGA-GGCATC  136
      | |||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  TGGGGTCATGCATATTCAAATCAATACAGGTATGAAAGACTGAGGGCATC  150

seq1  CAGAATTGTTTTATTACTCCTAAAGAGCCT-GTGGAAGGGGAA-TTTTTT  184
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  CAGAATTGTTTTATTACTCCTAAAGAGCCTGGTGGAAGGGGAATTTTTTT  200

seq1  TTTCTGTCTACCACATGAGCACATAGTAAGAAGATATCATTTATATACCC  234
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCTACCACATGAGCACATAGTAAGAAGATATCATTTATATACCC  250

seq1  -AAAAGCTCTTAATTTACACCAAATTTGGCATTGGCTGTCTAGTCATAGA  283
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCTCTTAATTTACACCAAATTTGGCATTGGCTGTCTAGTCATAGA  300

seq1  TACCAATAATTACTTCTATAGTAGTTTTCTATTATTCATGTTAACAATTT  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATAATTACTTCTATAGTAGTTTTCTATTATTCATGTTAACAATTT  350

seq1  TGTGTTTTAGTAATTGTAGTAACCAGAACATACCTGAACATGTACTTATG  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTAGTAATTGTAGTAACCAGAACATACCTGAACATGTACTTATG  400

seq1  ATGCACATGAGTCAAAAACTTGAAGAATTTCTCTTGTTTATACCCAATAA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATGAGTCAAAAACTTGAAGAATTTCTCTTGTTTATACCCAATAA  450

seq1  TAAAAAAAATGTTTACATTGACTTTAAAAAAATAAAATAAAATTAGAGTT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAATGTTTACATTGACTTTAAAAAAATAAAATAAAATTAGAGTT  500

seq1  CTGCATGTATAGATTTATTTCTTGATTTTTTTTGGCTCCTTTGAGATCTT  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTATAGATTTATTTCTTGATTTTTTTTGGCTCCTTTGAGATCTT  550

seq1  ATGATCTTAGCCATTCTAACTGCTGTGAGGTGGAATCTCAAGGTTGTTTT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTTAGCCATTCTAACTGCTGTGAGGTGGAATCTCAAGGTTGTTTT  600

seq1  GATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCT  650

seq1  TCTCTGCTATTCGGTATTCCTCAGGTGAGAATTCTTTGTTCAGGTCTGAG  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTATTCGGTATTCCTCAGGTGAGAATTCTTTGTTCAGGTCTGAG  700

seq1  CCCCATTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGT  750

seq1  TCTTTATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAA  800

seq1  GATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTT  850

seq1  TTGCCTTGCAGAAGCTTTGCAATTTTATTAGGTCCCATTTGTAGATTCTC  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTGCAGAAGCTTTGCAATTTTATTAGGTCCCATTTGTAGATTCTC  900

seq1  GATCTTACAACACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTACAACACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGT  950

seq1  ACTCATATCTTCGAGGGTTGTCCCTACTTTCTCCTCAATAAGTTTTAGTG  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATATCTTCGAGGGTTGTCCCTACTTTCTCCTCAATAAGTTTTAGTG  1000

seq1  TCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTAGATTATACCTTAGTA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTAGATTATACCTTAGTA  1050