BAC Information

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BAC

Clone NameB6Ng01-188J18
Chromosome12 (Build37)
Map Location 28,156,689 - 28,291,910
singlet/doubletdoublet
Overlap geneLOC100043009
Upstream geneTyki, LOC668731, 1700020D12Rik, Sox11
Downstream geneLOC669327, 1110015M06Rik, Allc, Colec11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188J18.bB6Ng01-188J18.g
ACCGA012867GA012868
length9961,087
definitionB6Ng01-188J18.b B6Ng01-188J18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,291,361 - 28,291,910)(28,156,689 - 28,157,785)
sequence
gaattcctgtgatcatgcctagcttgttgaggccaggacaactgatgtag
gagtgaaagctgggtacatggcctgttttaccctcaggcttcctggtcac
tttgtattctacacattttactatggaaatttaattgaaataattaacat
tgtaaataaaaatatttttaaagtttaattgcaatagggatacttcaaat
aatgcccgttcttgtagactcataaaaaaaattgtcatttgaaaacactt
ttctaaaaaaaaaaaaaaaagtgtcaaacaagcttaaatcatgaatttta
ctaaagttaatctgtttttaaatatatgaaatgttttcactgctctacag
gatgctatccagtttgatcagcaatatttatataagatgctgtcttctct
ccagtgggcattgttggtttctttgccaaaaatcaggtgggcttgagtgt
agacccctaattctagtccatcattcaatgtgtctatttttatgccagtg
tgatactatagctttgtagaataacttgaaacctggaatggtgatacttc
cgcactggttttattttctgggattgttcattctgaacttttgtgtttca
gtatgaagtgttaagataacttttccaatttctgtgcagagttccactgg
aattttgataaggctttctttgaatctgttggttgcttttttgtaagatg
accattttcacaatattaaccttaatcataaaaaatggctatgtgaatat
taatatcatatttttatcatgtataaatgtttttatttttcttatagagt
aaaattatagaactacatttgtgttcatctgctgtgtgttgctgtgttaa
aatcctgtctgtccaaatgcaatttatggaagtaaagctttgtttggctt
aaaggttgtgatccaccatagcaaggaacctgcagtaggaactgaagcgg
aagtcacagaagaatgctacctattggtttgctccattggcttgct

gaattctttgtcccttttcactctggaagctacatgcaaatcttcctgtc
cacagcccttgatccctgagggagccccctggagagcccacagggattct
tcaagcagaaaggacccagataagaccagaggctcctgtctcatcaccat
aaatgtgtccagagggatctgtagaagtggctttttgtacatccttacac
ggaagctctgtgcccactggcaggttgaatgccctgccgtgcgtttagtt
gctttgttgagaggcacagcatgccagaccttggcacacctaagatcatc
ccttccctcatcttcttttggtacaatctgggtaactctaaaatttatat
tgaattttcattgtttggtggagcatgggaaaaaaggagtgcctgggggt
agacagatatagccagggattaacagcaagggcaagaaagccactgccca
gaggagttgggagtgaaatggcacatggttctctttaggtttctgtcctg
aagcttataaaggctcttcctctgctgccccaggctcagaagaccctgtc
ttgcccaaaccctaggggattctcttcattctgatgaaagtggcaacatt
acacaaagcttgtcaaacatgtggctggtcagctgggcagtagacttctt
gtgggttccaggcctgcattctggctcataaaccagttttcacacagcct
gttcctggggctgattatcaaatcctagctcacatttgatcccacagtct
tctaaagctgctatctcgcagactggccatggataaatgtgcacaaaggt
tccagacactggcctgagccagatatgggaccctaggcttcagatcgggg
gagtctgcccaccttcctcaccctgggcctgacgaaagatggatggctct
gtatttttcttctggcaaattatatatcagaggacaggagactgaggatt
taattcagatttatttacggatgactgcacgaggattatttggtccaaca
gatgaaatgaaattttccactacaaagaagaggaatgagacggtaaattt
gattccattccagaagattattggtgtccaagacctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_28291361_28291910
seq2: B6Ng01-188J18.b_45_594 (reverse)

seq1  GAAGTATCACCATTCCAGGTTTCAAGTTATTCTACAAAGCTATAGTATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATCACCATTCCAGGTTTCAAGTTATTCTACAAAGCTATAGTATCA  50

seq1  CACTGGCATAAAAATAGACACATTGAATGATGGACTAGAATTAGGGGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCATAAAAATAGACACATTGAATGATGGACTAGAATTAGGGGTCT  100

seq1  ACACTCAAGCCCACCTGATTTTTGGCAAAGAAACCAACAATGCCCACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAAGCCCACCTGATTTTTGGCAAAGAAACCAACAATGCCCACTGG  150

seq1  AGAGAAGACAGCATCTTATATAAATATTGCTGATCAAACTGGATAGCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGACAGCATCTTATATAAATATTGCTGATCAAACTGGATAGCATC  200

seq1  CTGTAGAGCAGTGAAAACATTTCATATATTTAAAAACAGATTAACTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAGCAGTGAAAACATTTCATATATTTAAAAACAGATTAACTTTAG  250

seq1  TAAAATTCATGATTTAAGCTTGTTTGACACTTTTTTTTTTTTTTTTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTCATGATTTAAGCTTGTTTGACACTTTTTTTTTTTTTTTTAGAA  300

seq1  AAGTGTTTTCAAATGACAATTTTTTTTATGAGTCTACAAGAACGGGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTTCAAATGACAATTTTTTTTATGAGTCTACAAGAACGGGCATT  350

seq1  ATTTGAAGTATCCCTATTGCAATTAAACTTTAAAAATATTTTTATTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGTATCCCTATTGCAATTAAACTTTAAAAATATTTTTATTTACA  400

seq1  ATGTTAATTATTTCAATTAAATTTCCATAGTAAAATGTGTAGAATACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAATTATTTCAATTAAATTTCCATAGTAAAATGTGTAGAATACAAA  450

seq1  GTGACCAGGAAGCCTGAGGGTAAAACAGGCCATGTACCCAGCTTTCACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCAGGAAGCCTGAGGGTAAAACAGGCCATGTACCCAGCTTTCACTC  500

seq1  CTACATCAGTTGTCCTGGCCTCAACAAGCTAGGCATGATCACAGGAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCAGTTGTCCTGGCCTCAACAAGCTAGGCATGATCACAGGAATTC  550


seq1: chr12_28156689_28157785
seq2: B6Ng01-188J18.g_67_1153

seq1  GAATTCTTTGTCCCTTTTCACTCTGGAAGCTACATGCAAATCTTCCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTCCCTTTTCACTCTGGAAGCTACATGCAAATCTTCCTGTC  50

seq1  CACAGCCCTTGATCCCTGAGGGAGCCCCCTGGAGAGCCCACAGGGATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCCTTGATCCCTGAGGGAGCCCCCTGGAGAGCCCACAGGGATTCT  100

seq1  TCAAGCAGAAAGGACCCAGATAAGACCAGAGGCTCCTGTCTCATCACCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAGAAAGGACCCAGATAAGACCAGAGGCTCCTGTCTCATCACCAT  150

seq1  AAATGTGTCCAGAGGGATCTGTAGAAGTGGCTTTTTGTACATCCTTACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTCCAGAGGGATCTGTAGAAGTGGCTTTTTGTACATCCTTACAC  200

seq1  GGAAGCTCTGTGCCCACTGGCAGGTTGAATGCCCTGCCGTGCGTTTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTCTGTGCCCACTGGCAGGTTGAATGCCCTGCCGTGCGTTTAGTT  250

seq1  GCTTTGTTGAGAGGCACAGCATGCCAGACCTTGGCACACCTAAGATCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTTGAGAGGCACAGCATGCCAGACCTTGGCACACCTAAGATCATC  300

seq1  CCTTCCCTCATCTTCTTTTGGTACAATCTGGGTAACTCTAAAATTTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTCATCTTCTTTTGGTACAATCTGGGTAACTCTAAAATTTATAT  350

seq1  TGAATTTTCATTGTTTGGTGGAGCATGGGAAAAAAGGAGTGCCTGGGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTCATTGTTTGGTGGAGCATGGGAAAAAAGGAGTGCCTGGGGGT  400

seq1  AGACAGATATAGCCAGGGATTAACAGCAAGGGCAAGAAAGCCACTGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGATATAGCCAGGGATTAACAGCAAGGGCAAGAAAGCCACTGCCCA  450

seq1  GAGGAGTTGGGAGTGAAATGGCACATGGTTCTCTTTAGGTTTCTGTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTTGGGAGTGAAATGGCACATGGTTCTCTTTAGGTTTCTGTCCTG  500

seq1  AAGCTTATAAAGGCTCTTCCTCTGCTGCCCCAGGCTCAGAAGACCCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTATAAAGGCTCTTCCTCTGCTGCCCCAGGCTCAGAAGACCCTGTC  550

seq1  TTGCCCAAACCCTAGGGGATTCTCTTCATTCTGATGAAAGTGGCAACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAAACCCTAGGGGATTCTCTTCATTCTGATGAAAGTGGCAACATT  600

seq1  ACACAAAGCTTGTCAAACATGTGGCTGGTCAGCTGGGCAGTAGACTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGCTTGTCAAACATGTGGCTGGTCAGCTGGGCAGTAGACTTCTT  650

seq1  GTGGGTTCCAGGCCTGCATTCTGGCTCATAAACCAGTTTTCACACAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTCCAGGCCTGCATTCTGGCTCATAAACCAGTTTTCACACAGCCT  700

seq1  GTTCCTGGGGCTGATTATCAAATCCTAGCTCACATTTGATCCCACAGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGGGGCTGATTATCAAATCCTAGCTCACATTTGATCCCACAGTCT  750

seq1  TCTAAAGCTGCTATCTCGCAGACTGGCCATGGATAAATGTGCACAAAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGCTGCTATCTCGCAGACTGGCCATGGATAAATGTGCACAAAGGT  800

seq1  TCCAGACACTGGCCTGAGCCAGATATGGGACCCTAGGCTTCAGATCGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACACTGGCCTGAGCCAGATATGGGACCCTAGGCTTCAGATCGGGG  850

seq1  GAGTCTGCCCACCTTCCTCACCCTGGGCCTGACGAAAGATGGATGGCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGCCCACCTTCCTCACCCTGGGCCTGACGAAAGATGGATGGCTCT  900

seq1  GTA-TTTTCTTCTGGCAAATTATATATCAGAGGACAGGAGACTGAGGAAT  949
      ||| |||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTATTTTTCTTCTGGCAAATTATATATCAGAGGACAGGAGACTGAGGATT  950

seq1  TAATTCAAGATTAATTTACGGATGACTGCACGAGGAATTATTTGG-CCAA  998
      |||||| ||||| |||||||||||||||||||||| ||||||||| ||||
seq2  TAATTC-AGATTTATTTACGGATGACTGCACGAGG-ATTATTTGGTCCAA  998

seq1  CAGATGAAAAATGAAATTTT-CACTACAAAG-AGAGGAAATTGGAGAAGG  1046
      ||||||  |||||||||||| |||||||||| |||||||    |||| ||
seq2  CAGATG--AAATGAAATTTTCCACTACAAAGAAGAGGAA---TGAGACGG  1043

seq1  GTTAAATTTTAATCCCATTTCCCAGAAAGAATTATT-GTGTCCCAAGACC  1095
        |||| ||| || |||||  ||||||   |||||| |||| ||||||||
seq2  --TAAA-TTTGATTCCATT--CCAGAA--GATTATTGGTGT-CCAAGACC  1085

seq1  TT  1097
      ||
seq2  TT  1087


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