BAC Information

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BAC

Clone NameB6Ng01-189A06
Chromosome12 (Build37)
Map Location 67,852,861 - 67,938,473
singlet/doubletdoublet
Overlap geneMdga2
Upstream geneLOC100040700, EG238217
Downstream geneLOC100040745
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189A06.bB6Ng01-189A06.g
ACCGA013151GA013152
length9721,048
definitionB6Ng01-189A06.b B6Ng01-189A06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,937,501 - 67,938,473)(67,852,861 - 67,853,917)
sequence
gaattcagagctacatctgaatcccaaaggtgtgctaatatttcttgctc
agataatgtaaaaagtgggcaaaatattatttataaacaaataaatgttt
tacaatataatgccctggctaaaagaaaaatggaaaaaaaaaaaaacttc
aaggagaaaatttaaatgatgtaaaatttttaattactagataaatctat
attttcatattctaataaattattttgagtatgaaaatttgtttattgca
tgagtttatatatggtatatgacttgtactttgaaatatcataactaaaa
tgaataattgcagctaatcaaattgatggtgataaatttagatggcaagt
ttaaaattctgtagcgactactccagtaccaaaagttttctgggttatga
ataaacagaaaatgctataagacacaaacttaggaagcatctgtgagcat
ggacgtagatgtccagaacgttctttgattctccaatctttctctcttca
gaccacatggcctattttgagtagatatcttgagctgtaaatgtgacaaa
aaagcaaaccaaactataaagtcagtttaggtaagtgatgatattaattg
attttaagctcaaacattactaatatttagaagcaatgggagacacattg
tatactagagccagtgagcaagagggcataaatctttggcctatcagcaa
ggacagtcgacaaatggatacagttttgtaaaaatctgtacagatttttg
agagatattaagcacaatacacagtaatagaagtaaggtcagggcaattt
caaatttcaatgaaatatatttggaaagccttcacaaggaactgaacttt
gagctagatagagcttatggacataaagaatgaaagatataaatatctga
agtaagcatttttctgagaagaggagaaggagaagaaggagaaggaaggg
aggagaagaagggagaatgaga
gaattcctctaaggagaaagggactctgggaagaagaaagaggaagggct
tttcaccaggagatgtaagagaagacagctgtgactacagaactagaagg
catacctactcacatgtcaggaccagcctaggtggtcgggtaaacttaga
taagctagttgagagtctattcgataaggcctaagctttgaaatattaaa
aggtctccatgtcattatttttggttggtgagtcaccaaggtcatataac
aaattttagttgaaaaatttccggatttggcctttggttagcatacaaat
atcacaaataaaacataaggagtatccttatggcaaaataatgttacaaa
attagaacactgtgactaaaaatcatgagacagccaaataaattgaggca
acaaatttgaatatctaaatttaactcattacttccattcagagtctctt
ttaataaggatatcattttataatacctttatatttgaatgtaccctcat
aattctatatcctgtagttcaaagtcatcaaagctaaatatcctcatttt
gtatttgtaacattttatttgtgtctcttattttaaataaaatattgcat
atctgtgaagaactgacatttctatacaatgcagagctcattcttatcat
acaatgtatatttagatcatccgagtcctacatatgtaacattaattgtt
tttgtaataaaaatgatgtttttactaaaaatatcaggtattaatagagt
actgacataaaggatatgtgtgtgttttgttattttatgtaattgtgtat
accatatgtgacacaaaaccactaagcatagcactatttcatgcaaacaa
agtgataggtcaaaaatgccaaatattgcttgttagaaacccttgaactt
tcaaatttaagtatttcaaatttggtatttctcatcatattatttgagtc
attatatcacttaatcaatatgcttttctactggaagaaagaaaaaaaaa
tctctaaacatgagttataaaaacaggcacactttgaagctatatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_67937501_67938473
seq2: B6Ng01-189A06.b_44_1015 (reverse)

seq1  TCTCCTTCT-CCTTCTTCTCCT-CCTTCCTTCTCCTTCCTTCTCCTTCTC  48
      |||| |||| |||||||||||| |||||||||||||| ||||||||||||
seq2  TCTCATTCTCCCTTCTTCTCCTCCCTTCCTTCTCCTT-CTTCTCCTTCTC  49

seq1  CTCCTTCTTCAG-AAAATGCTTACTTCAGATATTTATATCTTTCATTCTT  97
      || |||| |||| ||||||||||||||||||||||||||||||||||| |
seq2  CT-CTTC-TCAGAAAAATGCTTACTTCAGATATTTATATCTTTCATTC-T  96

seq1  TTATGTCCATAAGCTCTATCTAGCTCAAAGTTCAGTTCCTTGTGAAGGCT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCCATAAGCTCTATCTAGCTCAAAGTTCAGTTCCTTGTGAAGGCT  146

seq1  TTCCAAATATATTTCATTGAAATTTGAAATTGCCCTGACCTTACTTCTAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATATATTTCATTGAAATTTGAAATTGCCCTGACCTTACTTCTAT  196

seq1  TACTGTGTATTGTGCTTAATATCTCTCAAAAATCTGTACAGATTTTTACA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGTATTGTGCTTAATATCTCTCAAAAATCTGTACAGATTTTTACA  246

seq1  AAACTGTATCCATTTGTCGACTGTCCTTGCTGATAGGCCAAAGATTTATG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTATCCATTTGTCGACTGTCCTTGCTGATAGGCCAAAGATTTATG  296

seq1  CCCTCTTGCTCACTGGCTCTAGTATACAATGTGTCTCCCATTGCTTCTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTGCTCACTGGCTCTAGTATACAATGTGTCTCCCATTGCTTCTAA  346

seq1  ATATTAGTAATGTTTGAGCTTAAAATCAATTAATATCATCACTTACCTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGTAATGTTTGAGCTTAAAATCAATTAATATCATCACTTACCTAA  396

seq1  ACTGACTTTATAGTTTGGTTTGCTTTTTTGTCACATTTACAGCTCAAGAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTTTATAGTTTGGTTTGCTTTTTTGTCACATTTACAGCTCAAGAT  446

seq1  ATCTACTCAAAATAGGCCATGTGGTCTGAAGAGAGAAAGATTGGAGAATC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTCAAAATAGGCCATGTGGTCTGAAGAGAGAAAGATTGGAGAATC  496

seq1  AAAGAACGTTCTGGACATCTACGTCCATGCTCACAGATGCTTCCTAAGTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACGTTCTGGACATCTACGTCCATGCTCACAGATGCTTCCTAAGTT  546

seq1  TGTGTCTTATAGCATTTTCTGTTTATTCATAACCCAGAAAACTTTTGGTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTTATAGCATTTTCTGTTTATTCATAACCCAGAAAACTTTTGGTA  596

seq1  CTGGAGTAGTCGCTACAGAATTTTAAACTTGCCATCTAAATTTATCACCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTAGTCGCTACAGAATTTTAAACTTGCCATCTAAATTTATCACCA  646

seq1  TCAATTTGATTAGCTGCAATTATTCATTTTAGTTATGATATTTCAAAGTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTGATTAGCTGCAATTATTCATTTTAGTTATGATATTTCAAAGTA  696

seq1  CAAGTCATATACCATATATAAACTCATGCAATAAACAAATTTTCATACTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCATATACCATATATAAACTCATGCAATAAACAAATTTTCATACTC  746

seq1  AAAATAATTTATTAGAATATGAAAATATAGATTTATCTAGTAATTAAAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATTTATTAGAATATGAAAATATAGATTTATCTAGTAATTAAAAA  796

seq1  TTTTACATCATTTAAATTTTCTCCTTGAAGTTTTTTTTTTTTTCCATTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATCATTTAAATTTTCTCCTTGAAGTTTTTTTTTTTTTCCATTTT  846

seq1  TCTTTTAGCCAGGGCATTATATTGTAAAACATTTATTTGTTTATAAATAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAGCCAGGGCATTATATTGTAAAACATTTATTTGTTTATAAATAA  896

seq1  TATTTTGCCCACTTTTTACATTATCTGAGCAAGAAATATTAGCACACCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGCCCACTTTTTACATTATCTGAGCAAGAAATATTAGCACACCTT  946

seq1  TGGGATTCAGATGTAGCTCTGAATTC  973
      ||||||||||||||||||||||||||
seq2  TGGGATTCAGATGTAGCTCTGAATTC  972

seq1: chr12_67852861_67853917
seq2: B6Ng01-189A06.g_65_1112

seq1  GAATTCCTCTAAGGAGAAAGGGACTCTGGGAAGAAGAAAGAGGAAGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTAAGGAGAAAGGGACTCTGGGAAGAAGAAAGAGGAAGGGCT  50

seq1  TTTCACCAGGAGATGTAAGAGAAGACAGCTGTGACTACAGAACTAGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCAGGAGATGTAAGAGAAGACAGCTGTGACTACAGAACTAGAAGG  100

seq1  CATACCTACTCACATGTCAGGACCAGCCTAGGTGGTCGGGTAAACTTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTACTCACATGTCAGGACCAGCCTAGGTGGTCGGGTAAACTTAGA  150

seq1  TAAGCTAGTTGAGAGTCTATTCGATAAGGCCTAAGCTTTGAAATATTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAGTTGAGAGTCTATTCGATAAGGCCTAAGCTTTGAAATATTAAA  200

seq1  AGGTCTCCATGTCATTATTTTTGGTTGGTGAGTCACCAAGGTCATATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCCATGTCATTATTTTTGGTTGGTGAGTCACCAAGGTCATATAAC  250

seq1  AAATTTTAGTTGAAAAATTTCCGGATTTGGCCTTTGGTTAGCATACAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAGTTGAAAAATTTCCGGATTTGGCCTTTGGTTAGCATACAAAT  300

seq1  ATCACAAATAAAACATAAGGAGTATCCTTATGGCAAAATAATGTTACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAATAAAACATAAGGAGTATCCTTATGGCAAAATAATGTTACAAA  350

seq1  ATTAGAACACTGTGACTAAAAATCATGAGACAGCCAAATAAATTGAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAACACTGTGACTAAAAATCATGAGACAGCCAAATAAATTGAGGCA  400

seq1  ACAAATTTGAATATCTAAATTTAACTCATTACTTCCATTCAGAGTCTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTGAATATCTAAATTTAACTCATTACTTCCATTCAGAGTCTCTT  450

seq1  TTAATAAGGATATCATTTTATAATACCTTTATATTTGAATGTACCCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAGGATATCATTTTATAATACCTTTATATTTGAATGTACCCTCAT  500

seq1  AATTCTATATCCTGTAGTTCAAAGTCATCAAAGCTAAATATCCTCATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTATATCCTGTAGTTCAAAGTCATCAAAGCTAAATATCCTCATTTT  550

seq1  GTATTTGTAACATTTTATTTGTGTCTCTTATTTTAAATAAAATATTGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGTAACATTTTATTTGTGTCTCTTATTTTAAATAAAATATTGCAT  600

seq1  ATCTGTGAAGAACTGACATTTCTATACAATGCAGAGCTCATTCTTATCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGAAGAACTGACATTTCTATACAATGCAGAGCTCATTCTTATCAT  650

seq1  ACAATGTATATTTAGATCATCCGAGTCCTACATATGTAACATTAATTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTATATTTAGATCATCCGAGTCCTACATATGTAACATTAATTGTT  700

seq1  TTTGTAATAAAAATGATGTTTTTACTAAAAATATCAGGTATTAATAGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATAAAAATGATGTTTTTACTAAAAATATCAGGTATTAATAGAGT  750

seq1  ACTGACATAAAGGATATGTGTGTGTTTTGTTATTTTATGTAATTGTGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATAAAGGATATGTGTGTGTTTTGTTATTTTATGTAATTGTGTAT  800

seq1  ACCATATGTGACACAAAACCACTAAGCATAGCACTATTTCATGCAAACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATGTGACACAAAACCACTAAGCATAGCACTATTTCATGCAAACAA  850

seq1  AGTGATAGGTCAAAAATGCCAAATATTGCTTGTTAGAAACCTTTGAACTT  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGTGATAGGTCAAAAATGCCAAATATTGCTTGTTAGAAACCCTTGAACTT  900

seq1  TCAAATTTAAGTATTTCAAATTTGGTATTTCTCATCATA-TATTTGAGTC  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCAAATTTAAGTATTTCAAATTTGGTATTTCTCATCATATTATTTGAGTC  950

seq1  ATTATATCACTTAATCAATATGCTTTTCTAACTTGGAAGAAAGAAAAAAA  999
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  ATTATATCACTTAATCAATATGCTTTTCTA--CTGGAAGAAAGAAAAAAA  998

seq1  AATCTTCTAAACATTGGAG-TATAAAAACAAGCCACACTTTTTAAAAGGC  1048
      |||| |||||||||  ||| ||||||||| || ||||||||    |||  
seq2  AATC-TCTAAACAT--GAGTTATAAAAAC-AGGCACACTTT---GAAG--  1039

seq1  ATATATGTA  1057
       ||||||||
seq2  CTATATGTA  1048