BAC Information

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BAC

Clone NameB6Ng01-189G12
Chromosome12 (Build37)
Map Location 36,290,905 - 36,440,654
singlet/doubletdoublet
Overlap geneLOC100043575
Upstream gene4921508M14Rik, Prps1l1, Snx13, Ahr
Downstream geneLOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189G12.bB6Ng01-189G12.g
ACCGA013436GA013437
length1,160707
definitionB6Ng01-189G12.b B6Ng01-189G12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,439,516 - 36,440,654)(36,290,905 - 36,291,611)
sequence
gaattccataaataaataatgtctctgcactgtgtcttggcatgcttggt
ttgagcgtccacaaaaaacaaaaacaaaaacaaacaacccccccccccca
aaaaaaagaaccaaaagtagtttcacacttaaacacacacacacacacat
ctacacacataaactaacatacatatatgcacatacaggtacatacatac
agacacacacatgcatacacatactaaaacacacatatatttacacacac
acacacgggaggtaggggagaagttgtagatttctgatgaactcattttc
ttgactgagaagtcaatgaaatgttatattgaagggaataaagccttaat
ttcttttaggtcagtacttctcttgagagacatttttcttcggtgccctg
ggaaactgaactttctcaatgggattagtggcatttgctgtttcaaatcg
aaacaggatctcctggcctacactaactttacaatcggcaccatctactc
tgtggtcactgctgaagtattagagctaacctaaggaggcaggaagtgac
attaagctttgttctgttctattctggcctagagatggagtctgagataa
agaaaagactgcaactttcctgtaacacaactttcctgtaacacaattct
tgcctgtaggggcaaggcttttcaccgaaaagccaaaagggatttttatg
gtcaaccaagttgcatatttcccttgtccttcatgtttcaaatggctata
gatacaaccagtttccccttagctatattcttgcaagtgagggagagcag
gacagagagaaggagggtatcttagaaacctttaattccatttacagaaa
taccacagcagtcctgcacgtatatcacataatttatgtctgaggtaagc
ctagggaatgtagtcatttgttcagggttgtttttccattgcaaaatctc
caaatagaattatcaagtcttatcaaatgttaattttgtcaaggaaaaac
agatagctaaataaggataacctagattttttatcgtaaattagaagaat
cattcctgaaaggctttccattgtctccaaaggaaagcatgatgaaggga
tgaagtgaggggagtcttaaaagaaaacctactcatcttttctcacgacg
ctactacatg
gaattccgtggtcaacattgcttagttctggtccccagtgaccttcgtgg
aaaaacatgtgcaaagtctgttcattgtcttgtgcttaataagcagaatg
gtggacaaggatcaattttaaagtcaatttcaaaagtaagactcaatata
tgtacatggtaataccattacttattcataaaacttggttattaaacaga
ctgttctcttacgaaactctagaagaatgaagaccaaagtgtggacactt
tgccccttcttagaattgggaacaaaacacccatggaaggagttacagag
acaaagtttggagctgcgacaaaaggatggaccatctagagactgcctta
tctagggatccaccccataatcagcttccaaacgctgacaccattgcata
cactagcaagattttgctgaaaggacccagatatagctatctcttgtgag
actaggccctggcctagcaaacacataagtagatgctcacagtcagctat
tggatggaccacagggcccccaatggaggagctagagaaagtacccaagg
agctaaagagatctgcaaccctgcaggtgcaacaacattatgaactaacc
agtaccccggagctcttgactctagctacatatgtatcaaaagatggcct
agttggccatcactggaaagagaggcccattggacacacaaacttttatg
ccccagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_36439516_36440654
seq2: B6Ng01-189G12.b_46_1205 (reverse)

seq1  CATGTAG------CGTGTAGAAAAGATGAGTAGTGTTTCTTTTTAAGACT  44
      |||||||      |||| ||||||||||||||| ||||  ||||||||||
seq2  CATGTAGTAGCGTCGTG-AGAAAAGATGAGTAG-GTTTTCTTTTAAGACT  48

seq1  CCCCTCAC-TCATCCTTCAATCATGC-TTCCTTTGGAGAC-ATGG-AAGC  90
      |||||||| |||||| |  ||||||| ||||||||||||| |||| ||||
seq2  CCCCTCACTTCATCCCTTCATCATGCTTTCCTTTGGAGACAATGGAAAGC  98

seq1  C-TTCAGG-ATGATTC-TCT-ATTTACAAT-ATAAATCTA-GTTATCCTT  134
      | |||||| ||||||| ||| |||||| || | ||||||| |||||||||
seq2  CTTTCAGGAATGATTCTTCTAATTTACGATAAAAAATCTAGGTTATCCTT  148

seq1  A-TTAGCTATTCTGTTTTT-CTTGAC-AAATTAACATTTGAT-AGACTTG  180
      | ||||||| ||||||||| |||||| ||||||||||||||| |||||||
seq2  ATTTAGCTA-TCTGTTTTTCCTTGACAAAATTAACATTTGATAAGACTTG  197

seq1  ATAATTCTATTTGGAGATTTTGCAATGGAAAAACAACCCTGAACAAATGA  230
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCTATTTGGAGATTTTGCAATGGAAAAACAACCCTGAACAAATGA  247

seq1  CTACATTCCCTAGGCTTACCTCAGACAT-AATTATGTGATATACGTGCA-  278
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  CTACATTCCCTAGGCTTACCTCAGACATAAATTATGTGATATACGTGCAG  297

seq1  GACTGCTGTGGTATTTCTGTAAATGGAATT-AAGGTTTCTAAGATACCCT  327
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GACTGCTGTGGTATTTCTGTAAATGGAATTAAAGGTTTCTAAGATACCCT  347

seq1  CCTTCTCTCTGTCCTGCTCTCCCTCACTTGCAAGAATATAGCTAAGGGGA  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTCTGTCCTGCTCTCCCTCACTTGCAAGAATATAGCTAAGGGGA  397

seq1  AACTGGTTGTATCTATAGCCATTTGAAACATGAAGGACAAGGGAAATATG  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTTGTATCTATAGCCATTTGAAACATGAAGGACAAGGGAAATATG  447

seq1  CAACTTGGTTGACCATAAAAATCCCTTTTGGCTTTTCGGTG-AAAGCCTT  476
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAACTTGGTTGACCATAAAAATCCCTTTTGGCTTTTCGGTGAAAAGCCTT  497

seq1  GCCCCTACAGGCAAGAATTGTGTTACAGGAAAGTTGTGTTACAGGAAAGT  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTACAGGCAAGAATTGTGTTACAGGAAAGTTGTGTTACAGGAAAGT  547

seq1  TGCAGTCTTTTCTTTATCTCAGACTCCATCTCTAGGCCAGAATAGAACAG  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCTTTTCTTTATCTCAGACTCCATCTCTAGGCCAGAATAGAACAG  597

seq1  AACAAAGCTTAATGTCACTTCCTGCCTCCTTAGGTTAGCTCTAATACTTC  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGCTTAATGTCACTTCCTGCCTCCTTAGGTTAGCTCTAATACTTC  647

seq1  AGCAGTGACCACAGAGTAGATGGTGCCGATTGTAAAGTTAGTGTAGGCCA  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGACCACAGAGTAGATGGTGCCGATTGTAAAGTTAGTGTAGGCCA  697

seq1  GGAGATCCTGTTTCGATTTGAAACAGCAAATGCCACTAATCCCATTGAGA  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCCTGTTTCGATTTGAAACAGCAAATGCCACTAATCCCATTGAGA  747

seq1  AAGTTCAGTTTCCCAGGGCACCGAAGAAAAATGTCTCTCAAGAGAAGTAC  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAGTTTCCCAGGGCACCGAAGAAAAATGTCTCTCAAGAGAAGTAC  797

seq1  TGACCTAAAAGAAATTAAGGCTTTATTCCCTTCAATATAACATTTCATTG  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAAAAGAAATTAAGGCTTTATTCCCTTCAATATAACATTTCATTG  847

seq1  ACTTCTCAGTCAAGAAAATGAGTTCATCAGAAATCTACAACTTCTCCCCT  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCAGTCAAGAAAATGAGTTCATCAGAAATCTACAACTTCTCCCCT  897

seq1  ACCTCCCGTGTGTGTGTGTGTAAATATATGTGTGTTTTAGTATGTGTATG  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCGTGTGTGTGTGTGTAAATATATGTGTGTTTTAGTATGTGTATG  947

seq1  CATGTGTGTGTCTGTATGTATGTACCTGTATGTGCATATATGTATGTTAG  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGTGTCTGTATGTATGTACCTGTATGTGCATATATGTATGTTAG  997

seq1  TTTATGTGTGTAGATGTGTGTGTGTGTGTGTTTAAGTGTGAAACTACTTT  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGTGTAGATGTGTGTGTGTGTGTGTTTAAGTGTGAAACTACTTT  1047

seq1  TGGTTCTTTTTTTTGGGGGGGGGGGGTTGTTTGTTTTTGTTTTTGTTTTT  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTTTTTTTTGGGGGGGGGGGGTTGTTTGTTTTTGTTTTTGTTTTT  1097

seq1  TGTGGACGCTCAAACCAAGCATGCCAAGACACAGTGCAGAGACATTATTT  1126
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACGCTCAAACCAAGCATGCCAAGACACAGTGCAGAGACATTATTT  1147

seq1  ATTTATGGAATTC  1139
      |||||||||||||
seq2  ATTTATGGAATTC  1160

seq1: chr12_36290905_36291611
seq2: B6Ng01-189G12.g_66_772

seq1  GAATTCCGTGGTCAACATTGCTTAGTTCTGGTCCCCAGTGACCTTCGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTGGTCAACATTGCTTAGTTCTGGTCCCCAGTGACCTTCGTGG  50

seq1  AAAAACATGTGCAAAGTCTGTTCATTGTCTTGTGCTTAATAAGCAGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATGTGCAAAGTCTGTTCATTGTCTTGTGCTTAATAAGCAGAATG  100

seq1  GTGGACAAGGATCAATTTTAAAGTCAATTTCAAAAGTAAGACTCAATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACAAGGATCAATTTTAAAGTCAATTTCAAAAGTAAGACTCAATATA  150

seq1  TGTACATGGTAATACCATTACTTATTCATAAAACTTGGTTATTAAACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGGTAATACCATTACTTATTCATAAAACTTGGTTATTAAACAGA  200

seq1  CTGTTCTCTTACGAAACTCTAGAAGAATGAAGACCAAAGTGTGGACACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTCTTACGAAACTCTAGAAGAATGAAGACCAAAGTGTGGACACTT  250

seq1  TGCCCCTTCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTTCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAGAG  300

seq1  ACAAAGTTTGGAGCTGCGACAAAAGGATGGACCATCTAGAGACTGCCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTTTGGAGCTGCGACAAAAGGATGGACCATCTAGAGACTGCCTTA  350

seq1  TCTAGGGATCCACCCCATAATCAGCTTCCAAACGCTGACACCATTGCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGATCCACCCCATAATCAGCTTCCAAACGCTGACACCATTGCATA  400

seq1  CACTAGCAAGATTTTGCTGAAAGGACCCAGATATAGCTATCTCTTGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGCAAGATTTTGCTGAAAGGACCCAGATATAGCTATCTCTTGTGAG  450

seq1  ACTAGGCCCTGGCCTAGCAAACACATAAGTAGATGCTCACAGTCAGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCCCTGGCCTAGCAAACACATAAGTAGATGCTCACAGTCAGCTAT  500

seq1  TGGATGGACCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGACCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGG  550

seq1  AGCTAAAGAGATCTGCAACCCTGCAGGTGCAACAACATTATGAACTAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAGAGATCTGCAACCCTGCAGGTGCAACAACATTATGAACTAACC  600

seq1  AGTACCCCGGAGCTCTTGACTCTAGCTACATATGTATCAAAAGATGGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCCCGGAGCTCTTGACTCTAGCTACATATGTATCAAAAGATGGCCT  650

seq1  AGTTGGCCATCACTGGAAAGAGAGGCCCATTGGACACACAAACTTTTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCCATCACTGGAAAGAGAGGCCCATTGGACACACAAACTTTTATG  700

seq1  CCCCAGT  707
      |||||||
seq2  CCCCAGT  707