BAC Information

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BAC

Clone NameB6Ng01-190C05
Chromosome12 (Build37)
Map Location 62,041,038 - 62,042,231
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622488, LOC665665, Ppia-ps12_475.1
Downstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699, LOC665707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190C05.bB6Ng01-190C05.g
ACCGA013971GA013972
length1,1861,198
definitionB6Ng01-190C05.b B6Ng01-190C05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtggaagaggaagaagaaaaattaaggtagacggagaggtcaa
tgataccacaaggaaacctacggagtcaactaacctggcatcctggggcc
tcagggagactgaactgccagctggagagcatgaatgacactgatctagg
acctgtgaatatatgtagtcattgtgcagttgggtctttgtgtgggactc
ctaaagtgggaacatggactgtcttacagtacattgcctgtgtttggatc
ccttttctctaactgggctgccttgtttagcctcagtagaaaaggatgag
ccaatatgatggactggttgtcatccatgggaggcctccccttttgggga
cagaagggtgtcaaggaaggactctaaggaagagaagggagaggaagctg
tgtaaagtgaataaataacatttttaatggatggattttcaaagtattta
tccatcagttttataaaaccaaaacatgttttagaatgacacaaaccttt
aaaaaggtcaaagctgttactttttgccaaaaaaataatcacaattcaca
ggattcaaaacataatctattataaacatactttactaccggcaaaagaa
tatgtctaagacttcatgagaattgaactataatgtagaagtaagatatt
cttctagaactttttaaagcatgtatcagtcaggttttatctacatttaa
agctggacaaaacgtcaaaaaattcatgttccctttttgtaagaatgtat
gacgaacgtattatgcactaaaaataaaatataaattcaaatatccttca
tatatataattaaggcttattttatgaatacctaaattacactccacata
aattcagggcttataattaatacgattttcttactttttgtaggtcatgg
tacatacacatcattgttcagttaaatagaaaaacatattaatatctaga
tgaagtgtccaattgttctattcacttctgaatcatttcaattaatacca
tttttttctttgattaaaagaatccttcatagactcaagtggtctttctt
taatgccacagttacttccattgtattttacagaagtaaaaaaccttcca
taaagtagaataatatatcaagaagccacgtttgtcattttgttatggct
gtagtcctgccataatcaacttctttataattctga
gaattcttcatagactttgcaaaagcaatttctatattcatctgaaataa
caaaaaacccaggataacaaaaactattctcaacaatgaaagaacttctg
ggggaataaccattcctgacattaagctgtactagagagcaattgtgata
aaaacttcatggtattggtacaatgacaggcaggtagataaatggaatag
aattgcagacccagaaatggacccacacacctgtgatcacttgatctttg
acaaaagaaggaaaactatccagtggaaaaaagacagtattttcaacaaa
tggtactggctcaattggcgattagcttgtagatagaataaggcacattg
acacattcttatctccttgtacaaaactcaagttcatggagtcaaggacc
tccacataaaaccagagacactgaaacttataaaagagaaagtgaggaag
agccttgaagatatgggcacaggggaaaaaatcctggacaaaacacaatg
gcttgtgatgttagatcaagaatcaaaaaatgggacctcataaaattgca
aagcttctgtaaggcaaatgacaatgtcaagaagacaaaaaggcccccaa
cagattgggaaaagatcttcaccatttccacatccaatagagggctaaaa
tccaatatatacaaagaactcaagaaggtagactccagagaaacaaatta
ctctattaaaaactggaatacatagctaaacaaagaattatcaactgagg
aatactaaatggctgagaagctcctaaaaaaaaaattgttcaacatcctt
agtcatcagggaaagacaaagcaaaacaaccctgaaatttcacttcatac
aagtcaaaaggctaagatcaaatttcaggtgacagcagatgctggcaagg
atgtggagaaagagaaaccctcctccattggtggcagaatttgcaagctg
gtgcaaccctctggaaatcagtttggtggtccctcaggaaattggacatc
atactacctgagacccagcaatacactctagcatagagcctgagatactc
aacatgttataggacacatgctctaacatttttcatagcagtctttattt
gtatagccagagctgaacagccaggatgtcctcacaagaatgcattcgaa
agtgtacattaaccatgagatactatcactctcagctatttaaaaacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_62041038_62042231
seq2: B6Ng01-190C05.b_47_1232 (reverse)

seq1  TCAGAAATTTATAAAGAAGGGTTGTATTATGGCAGGACTTACAGCCATAC  50
      ||||||  ||||||||||  |||| ||||||||||||| |||||||||| 
seq2  TCAGAA--TTATAAAGAA--GTTG-ATTATGGCAGGAC-TACAGCCATAA  44

seq1  AAAATTGACAAAACGTGGC-TCTTGATATAATTATCTAACCTTTAT-GAA  98
       ||| |||| ||||||||| |||||||||| |  ||||  |||||| |||
seq2  CAAAATGAC-AAACGTGGCTTCTTGATATATTATTCTA--CTTTATGGAA  91

seq1  GGTTTTTTACTTCTGTAAAATACAATGGAAGTAACTGTGGCATTAAAGAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTACTTCTGTAAAATACAATGGAAGTAACTGTGGCATTAAAGAA  141

seq1  AGACCACTTGAGTCTATGAAAGGATTCTTTTTAATCAAAG-AAAAAATGG  197
      |||||||||||||||||| |||||||| |||||||||||| |||||||||
seq2  AGACCACTTGAGTCTATG-AAGGATTC-TTTTAATCAAAGAAAAAAATGG  189

seq1  TATTAATTGAAATGATTCAGAAGTGAATAGAACAATTGGACACTTCATCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTGAAATGATTCAGAAGTGAATAGAACAATTGGACACTTCATCT  239

seq1  AGATATTAATATGTTTTTCTATTTAACTGAACAATGATGTGTATGTACCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTAATATGTTTTTCTATTTAACTGAACAATGATGTGTATGTACCA  289

seq1  TGACCTACAAAAAGTAAGAAAATCGTATTAATTATAAGCCCTGAATTTAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTACAAAAAGTAAGAAAATCGTATTAATTATAAGCCCTGAATTTAT  339

seq1  GTGGAGTGTAATTTAGGTATTCATAAAATAAGCCTTAATTATATATATGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTGTAATTTAGGTATTCATAAAATAAGCCTTAATTATATATATGA  389

seq1  AGGATATTTGAATTTATATTTTATTTTTAGTGCATAATACGTTCGTCATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATTTGAATTTATATTTTATTTTTAGTGCATAATACGTTCGTCATA  439

seq1  CATTCTTACAAAAAGGGAACATGAATTTTTTGACGTTTTGTCCAGCTTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTACAAAAAGGGAACATGAATTTTTTGACGTTTTGTCCAGCTTTA  489

seq1  AATGTAGATAAAACCTGACTGATACATGCTTTAAAAAGTTCTAGAAGAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGATAAAACCTGACTGATACATGCTTTAAAAAGTTCTAGAAGAAT  539

seq1  ATCTTACTTCTACATTATAGTTCAATTCTCATGAAGTCTTAGACATATTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACTTCTACATTATAGTTCAATTCTCATGAAGTCTTAGACATATTC  589

seq1  TTTTGCCGGTAGTAAAGTATGTTTATAATAGATTATGTTTTGAATCCTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCGGTAGTAAAGTATGTTTATAATAGATTATGTTTTGAATCCTGT  639

seq1  GAATTGTGATTATTTTTTTGGCAAAAAGTAACAGCTTTGACCTTTTTAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTGATTATTTTTTTGGCAAAAAGTAACAGCTTTGACCTTTTTAAA  689

seq1  GGTTTGTGTCATTCTAAAACATGTTTTGGTTTTATAAAACTGATGGATAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTGTCATTCTAAAACATGTTTTGGTTTTATAAAACTGATGGATAA  739

seq1  ATACTTTGAAAATCCATCCATTAAAAATGTTATTTATTCACTTTACACAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTGAAAATCCATCCATTAAAAATGTTATTTATTCACTTTACACAG  789

seq1  CTTCCTCTCCCTTCTCTTCCTTAGAGTCCTTCCTTGACACCCTTCTGTCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTCCCTTCTCTTCCTTAGAGTCCTTCCTTGACACCCTTCTGTCC  839

seq1  CCAAAAGGGGAGGCCTCCCATGGATGACAACCAGTCCATCATATTGGCTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGGGGAGGCCTCCCATGGATGACAACCAGTCCATCATATTGGCTC  889

seq1  ATCCTTTTCTACTGAGGCTAAACAAGGCAGCCCAGTTAGAGAAAAGGGAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTTCTACTGAGGCTAAACAAGGCAGCCCAGTTAGAGAAAAGGGAT  939

seq1  CCAAACACAGGCAATGTACTGTAAGACAGTCCATGTTCCCACTTTAGGAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACACAGGCAATGTACTGTAAGACAGTCCATGTTCCCACTTTAGGAG  989

seq1  TCCCACACAAAGACCCAACTGCACAATGACTACATATATTCACAGGTCCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACACAAAGACCCAACTGCACAATGACTACATATATTCACAGGTCCT  1039

seq1  AGATCAGTGTCATTCATGCTCTCCAGCTGGCAGTTCAGTCTCCCTGAGGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGTGTCATTCATGCTCTCCAGCTGGCAGTTCAGTCTCCCTGAGGC  1089

seq1  CCCAGGATGCCAGGTTAGTTGACTCCGTAGGTTTCCTTGTGGTATCATTG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGATGCCAGGTTAGTTGACTCCGTAGGTTTCCTTGTGGTATCATTG  1139

seq1  ACCTCTCCGTCTACCTTAATTTTTCTTCTTCCTCTTCCACAGAATTC  1194
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCCGTCTACCTTAATTTTTCTTCTTCCTCTTCCACAGAATTC  1186