BAC Information

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BAC

Clone NameB6Ng01-193G11
Chromosome12 (Build37)
Map Location 27,615,579 - 27,735,758
singlet/doubletdoublet
Overlap genenone
Upstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009, LOC669327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193G11.bB6Ng01-193G11.g
ACCGA016386GA016387
length1,0971,122
definitionB6Ng01-193G11.b B6Ng01-193G11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,615,579 - 27,616,675)(27,734,641 - 27,735,758)
sequence
gaattctgccacaggcatttgatcttggcacaggaaggagacatggaagc
agctgctccaggagggcttctggggaggcagttctagagggctccaacct
ctcccggtctttgtacagcacctccctgctttactcagctctgcagcaaa
ctgcttttgtccaataatgccgtattgaaatcaaaatgcaaaatgtaacg
cttatgcatctgtgaagaatggggatctggtattggtacttgggcagttt
caggtttggaggtgcagaatactgtccacacccatcccgtgaggagagga
gagagagagaggccatcacacaagtgttcctgccctatcctcaggacaca
atggtcttttgatttttttttaatagtgggacaatcacgtgacatgctct
gccattattgcccagtcttagggttgagactcaggctaggctattactga
tgagtggcagagctaagatttgaactcagaactctcacagcaaaatccac
tatataaccacccaattccagaaaggagaacttaaaagtttgtggtcagg
tggtaagcagccgaatagaagcctggggtttccgagaccagaaagtgttc
catttgctactaaactgatctcctctgcttggctcaggctcatactgaat
gatatggctctattccattcttgcctatatgggtagaagaattcacatgg
tttgtgataaagacactgattgtggtgcttagggatttagctcattggta
ggatggctgccgtagaagtgcaagacactaggcttgttcactagcagtgt
ggggagaaaagaaaactaaaacaaacacaaggagaaaacacaaaaaggta
tgcccccaatcagaaaagggaagaaaagaaaatcaaggaaaactttcttt
gtgtataagcatattcgtcagtgggactatctcaaccacatggctttaat
taataatatattttttagcccgtgtgtagtaagtttacatgggcttaaaa
ttctaagagcataaaatcaagaaacaagtttctctactctttttctttgg
cactcagatgccctccttatgtagccttaaatgagtatgttgacccc

gaattcaataaggttttcaaatacttttaattttattatttaaaattgcc
tatattggaaatttagtttgcacagaactgtgaaacatgaatcagtctag
aatgtttcatctctacatgtagctcaccaatatatgcacactttatatgc
tggaatctcacagagtaggcctatcttcccagggcttactccaacggagc
acaatgaaggggtctagagaaaggaatcccttccaggtaagctcaggaaa
tatgggtatatgagtgagagctgagactagagaaagagcaagtcaacgga
ccccagtggacatgaggccttggggaagcatagtggctatccagagttgt
cttgacctccactgcctcctctccttactccgggaagcattagctctgtg
tgtgtggtctgtagcccaggccgctccaggggagctgagaccctctggct
gaggacatgggcaacatcgtcttccaagtgtgaggaagactcttggcaaa
gatacaaaaatgtcccagagcccacagtataatgttgcatagtggtgggc
ccccaagccttccagtacagtgtgggaaagtcatgtcatcctaggagagt
gggcatattggtctagatttatggaatggatctcagaaggactatggtgt
aagccatgtggcaaatggtgatgtgtgcagtaggggtgtcttgcgtgaca
tccgacgaacaaaccaagcagcagctcgtctagaaggttcctgcctcttc
tgagtcttcctccagttcagagggccacagtaggtggcaaaggagatttt
catacatcttcccaatggttattcctgttagaggaatagcagagtgttat
agaggacagattgttgggctctgcatcctaaacccatggggacacaggta
cacacaggcagaaaatatgaatcaattaatttacagaaaccagcagaggg
ggaaaaaaacagaacaatcaaacatacaaaacaccaagcagaaaacaatg
ggtcagaacacggtcctggtgctgtgctggagacattcctgttactcctc
gggcagctgccgaatccattcacagaagcttcatccaatgacctacaata
caatgtctttagaagagccaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_27615579_27616675
seq2: B6Ng01-193G11.b_49_1145

seq1  GAATTCTGCCACAGGCATTTGATCTTGGCACAGGAAGGAGACATGGAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCACAGGCATTTGATCTTGGCACAGGAAGGAGACATGGAAGC  50

seq1  AGCTGCTCCAGGAGGGCTTCTGGGGAGGCAGTTCTAGAGGGCTCCAACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTCCAGGAGGGCTTCTGGGGAGGCAGTTCTAGAGGGCTCCAACCT  100

seq1  CTCCCGGTCTTTGTACAGCACCTCCCTGCTTTACTCAGCTCTGCAGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGGTCTTTGTACAGCACCTCCCTGCTTTACTCAGCTCTGCAGCAAA  150

seq1  CTGCTTTTGTCCAATAATGCCGTATTGAAATCAAAATGCAAAATGTAACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTGTCCAATAATGCCGTATTGAAATCAAAATGCAAAATGTAACG  200

seq1  CTTATGCATCTGTGAAGAATGGGGATCTGGTATTGGTACTTGGGCAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGCATCTGTGAAGAATGGGGATCTGGTATTGGTACTTGGGCAGTTT  250

seq1  CAGGTTTGGAGGTGCAGAATACTGTCCACACCCATCCCGTGAGGAGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTGGAGGTGCAGAATACTGTCCACACCCATCCCGTGAGGAGAGGA  300

seq1  GAGAGAGAGAGGCCATCACACAAGTGTTCCTGCCCTATCCTCAGGACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGGCCATCACACAAGTGTTCCTGCCCTATCCTCAGGACACA  350

seq1  ATGGTCTTTTGATTTTTTTTTAATAGTGGGACAATCACGTGACATGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTTTTGATTTTTTTTTAATAGTGGGACAATCACGTGACATGCTCT  400

seq1  GCCATTATTGCCCAGTCTTAGGGTTGAGACTCAGGCTAGGCTATTACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTATTGCCCAGTCTTAGGGTTGAGACTCAGGCTAGGCTATTACTGA  450

seq1  TGAGTGGCAGAGCTAAGATTTGAACTCAGAACTCTCACAGCAAAATCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGCAGAGCTAAGATTTGAACTCAGAACTCTCACAGCAAAATCCAC  500

seq1  TATATAACCACCCAATTCCAGAAAGGAGAACTTAAAAGTTTGTGGTCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAACCACCCAATTCCAGAAAGGAGAACTTAAAAGTTTGTGGTCAGG  550

seq1  TGGTAAGCAGCCGAATAGAAGCCTGGGGTTTCCGAGACCAGAAAGTGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGCAGCCGAATAGAAGCCTGGGGTTTCCGAGACCAGAAAGTGTTC  600

seq1  CATTTGCTACTAAACTGATCTCCTCTGCTTGGCTCAGGCTCATACTGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTACTAAACTGATCTCCTCTGCTTGGCTCAGGCTCATACTGAAT  650

seq1  GATATGGCTCTATTCCATTCTTGCCTATATGGGTAGAAGAATTCACATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGCTCTATTCCATTCTTGCCTATATGGGTAGAAGAATTCACATGG  700

seq1  TTTGTGATAAAGACACTGATTGTGGTGCTTAGGGATTTAGCTCATTGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATAAAGACACTGATTGTGGTGCTTAGGGATTTAGCTCATTGGTA  750

seq1  GGATGGCTGCCGTAGAAGTGCAAGACACTAGGCTTGTTCACTAGCAGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGCTGCCGTAGAAGTGCAAGACACTAGGCTTGTTCACTAGCAGTGT  800

seq1  GGGGAGAAAAGAAAACTAAAACAAACACAAGGAGAAAACACAAAAAGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAAAAGAAAACTAAAACAAACACAAGGAGAAAACACAAAAAGGTA  850

seq1  TGCCCCCAATCAGAAAAGGGAAGAAAAGAAAATCAAGGAAAACTTTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCAATCAGAAAAGGGAAGAAAAGAAAATCAAGGAAAACTTTCTTT  900

seq1  GTGTATAAGCATATTCGTCAGT-GGACTATCTCAACCACATGGCTTTAAT  949
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTGTATAAGCATATTCGTCAGTGGGACTATCTCAACCACATGGCTTTAAT  950

seq1  TAAT-ATATA-TTTTTAGCACGTGTGTAGTAAGTTTACAT-GGCTTAAAA  996
      |||| ||||| |||||||| |||||||||||||||||||| |||||||||
seq2  TAATAATATATTTTTTAGCCCGTGTGTAGTAAGTTTACATGGGCTTAAAA  1000

seq1  TTCTAAGAGCATAAAATCAAAGAAAACAAAGTTCTCTACTC-TTTTCTTT  1045
      ||||||||||||||||||||   ||||||  |||||||||| ||||||||
seq2  TTCTAAGAGCATAAAATCAA--GAAACAAGTTTCTCTACTCTTTTTCTTT  1048

seq1  GGCACTCAAGATGCCCTCCTTATGTAGCCTTAAAATGAGTATGGTTGACC  1095
      ||||||| ||||||||||||||||||||||| |||||||||| |||||||
seq2  GGCACTC-AGATGCCCTCCTTATGTAGCCTT-AAATGAGTAT-GTTGACC  1095

seq1  CC  1097
      ||
seq2  CC  1097


seq1: chr12_27734641_27735758
seq2: B6Ng01-193G11.g_66_1187 (reverse)

seq1  GTTGGCTC-TCTAAGGACATTGGTATTGTA-GTCAATGGAATGAAGC-TC  47
      |||||||| ||||| |||||| |||||||| |||| ||| ||||||| ||
seq2  GTTGGCTCTTCTAAAGACATT-GTATTGTAGGTCATTGG-ATGAAGCTTC  48

seq1  TGTGA--TGATTCGGCAGCTGCCCGAGGAGTAACAGG-ATGTCT-CAGCA  93
      |||||   ||||||||||||||||||||||||||||| |||||| |||||
seq2  TGTGAATGGATTCGGCAGCTGCCCGAGGAGTAACAGGAATGTCTCCAGCA  98

seq1  CAGCACCAGGACGTTGTCTTGACCCATTG-TTTCTGCTTGGTGTTTTGTT  142
      ||||||||||||  |||  |||||||||| |||||||||||||||||| |
seq2  CAGCACCAGGACCGTGTTCTGACCCATTGTTTTCTGCTTGGTGTTTTG-T  147

seq1  ATGTTTTGTTTTGTTCTGTTTTTTT-CCCCTCTGCTGGTTTCTGT-AATT  190
      ||||||    ||||||||||||||| ||||||||||||||||||| ||||
seq2  ATGTTT--GATTGTTCTGTTTTTTTCCCCCTCTGCTGGTTTCTGTAAATT  195

seq1  AATTGATTTCATATTTTCTGCCTGTGTGTACCTGTGTCCCCATGGGTTTA  240
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGA-TTCATATTTTCTGCCTGTGTGTACCTGTGTCCCCATGGGTTTA  244

seq1  GGATGCAGAGCCCAACAATCTGTCCTCTATAACACTCTGCTATTCCTCTA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCAGAGCCCAACAATCTGTCCTCTATAACACTCTGCTATTCCTCTA  294

seq1  ACAGGAATAACCATTGGGAAGATGTATGAAAATCTCCTTTGCCACCTACT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATAACCATTGGGAAGATGTATGAAAATCTCCTTTGCCACCTACT  344

seq1  GTGGCCCTCTGAACTGGAGGAAGACTCAGAAGAGGCAGGAACCTTCTAGA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCTCTGAACTGGAGGAAGACTCAGAAGAGGCAGGAACCTTCTAGA  394

seq1  CGAGCTGCTGCTTGGTTTGTTCGTCGGATGTCACGCAAGACACCCCTACT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTGCTGCTTGGTTTGTTCGTCGGATGTCACGCAAGACACCCCTACT  444

seq1  GCACACATCACCATTTGCCACATGGCTTACACCATAGTCCTTCTGAGATC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACATCACCATTTGCCACATGGCTTACACCATAGTCCTTCTGAGATC  494

seq1  CATTCCATAAATCTAGACCAATATGCCCACTCTCCTAGGATGACATGACT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCATAAATCTAGACCAATATGCCCACTCTCCTAGGATGACATGACT  544

seq1  TTCCCACACTGTACTGGAAGGCTTGGGGGCCCACCACTATGCAACATTAT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACACTGTACTGGAAGGCTTGGGGGCCCACCACTATGCAACATTAT  594

seq1  ACTGTGGGCTCTGGGACATTTTTGTATCTTTGCCAAGAGTCTTCCTCACA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGGCTCTGGGACATTTTTGTATCTTTGCCAAGAGTCTTCCTCACA  644

seq1  CTTGGAAGACGATGTTGCCCATGTCCTCAGCCAGAGGGTCTCAGCTCCCC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAGACGATGTTGCCCATGTCCTCAGCCAGAGGGTCTCAGCTCCCC  694

seq1  TGGAGCGGCCTGGGCTACAGACCACACACACAGAGCTAATGCTTCCCGGA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCGGCCTGGGCTACAGACCACACACACAGAGCTAATGCTTCCCGGA  744

seq1  GTAAGGAGAGGAGGCAGTGGAGGTCAAGACAACTCTGGATAGCCACTATG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGAGAGGAGGCAGTGGAGGTCAAGACAACTCTGGATAGCCACTATG  794

seq1  CTTCCCCAAGGCCTCATGTCCACTGGGGTCCGTTGACTTGCTCTTTCTCT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCAAGGCCTCATGTCCACTGGGGTCCGTTGACTTGCTCTTTCTCT  844

seq1  AGTCTCAGCTCTCACTCATATACCCATATTTCCTGAGCTTACCTGGAAGG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAGCTCTCACTCATATACCCATATTTCCTGAGCTTACCTGGAAGG  894

seq1  GATTCCTTTCTCTAGACCCCTTCATTGTGCTCCGTTGGAGTAAGCCCTGG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTTTCTCTAGACCCCTTCATTGTGCTCCGTTGGAGTAAGCCCTGG  944

seq1  GAAGATAGGCCTACTCTGTGAGATTCCAGCATATAAAGTGTGCATATATT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAGGCCTACTCTGTGAGATTCCAGCATATAAAGTGTGCATATATT  994

seq1  GGTGAGCTACATGTAGAGATGAAACATTCTAGACTGATTCATGTTTCACA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCTACATGTAGAGATGAAACATTCTAGACTGATTCATGTTTCACA  1044

seq1  GTTCTGTGCAAACTAAATTTCCAATATAGGCAATTTTAAATAATAAAATT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTGCAAACTAAATTTCCAATATAGGCAATTTTAAATAATAAAATT  1094

seq1  AAAAGTATTTGAAAACCTTATTGAATTC  1118
      ||||||||||||||||||||||||||||
seq2  AAAAGTATTTGAAAACCTTATTGAATTC  1122


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