BAC Information

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BAC

Clone NameB6Ng01-194L22
Chromosome12 (Build37)
Map Location 27,656,836 - 27,721,867
singlet/doubletdoublet
Overlap genenone
Upstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009, LOC669327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194L22.bB6Ng01-194L22.g
ACCGA017356GA017357
length1,155344
definitionB6Ng01-194L22.b B6Ng01-194L22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,656,836 - 27,657,959)(27,721,524 - 27,721,867)
sequence
gaattctcacttacaaaacatcttttccaggcttcttcatcctcctttta
ccattgtattattgatctttatatttactacacattagacatagactaga
ggatatatatatatatatatatatatatatatatatatatataatttaca
taagccttatgtataaaatatatacctattttagatatagttaatataaa
ttatccataggatttatccatagaagatagaattcttctctgatgcacta
cactcatgatgtgtaagggagtctcaaataagtcaggtcaataatatcca
aatgcattctacccatgtataaaataaccaaagaacaaataaaagtatgt
tttagaatcatttgtagtttgcttcctatgagtctattgcaaataaaatg
taggcccaggatcattttcaagaaccttaagactgcaggtcggagaacac
cctaaggaccaggcatcccctcttcctgctcctcctctcagattacagcc
tcccacatggccagcacttagccgaagaaccaaaagaaaatcccaagcat
tcatcagaattttctgatgagaaagcttacaaagttcagggaggaataca
agatgaactgcaagtcacttgtgctctgtacagccattgtgagaagctca
catctgccctggaagcagaggtagaccatgacctgcagctataaacctgg
gagcctaaccctacctctgtctgtggagcttgcaggcacaaagaaacctt
attctttgattgattctctagcaggtcaccttcctcctgaccatcggtaa
ccagagctgcctcaattataccccatcaagaagaacagataacaggaaag
ccaggttcatggagacggctgtaattttagaagcacttcctgtcatgagg
ctgacttttgatctccggatggtgcaaggtcagtgagttgaaagccaaag
gcatgcatgcatccactgtctcctggcctgctgagaaccttggtggtggt
gccatgacttagagttctaccagggttctgctttgaatccctattctgga
gaagccaaactctggctcctcaaataaccagttggggcagaaattgtggc
agttcagaatgaccttaaaacctggggaccttacgatgcagtatagatat
tagtt

actgtggttgctactctgcactttaggacttacaatgtcactagggtcat
aactccttttggatgacagagccagcctcaaaattccttatgtaatcact
tcatcatggtttatttctcaataatattactttcaacaatgatgtccttt
attaccttcatttaattaaaagataaggtgtctttgatttgaaagtactg
ctccatttcctctggttttagaggaatatttaaggtgagtaatttataga
gaaaaaattcccataggtagaaatccaggaaaggtgcctttgaatgtgtg
ctgtctcatagcatagtctcaaagatgtgcaggtatgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_27656836_27657959
seq2: B6Ng01-194L22.b_48_1201

seq1  GAATTCTCACTTACAAAACATCTTTTCCAGGCTTCTTCATCCTCCTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTTACAAAACATCTTTTCCAGGCTTCTTCATCCTCCTTTTA  50

seq1  CCATTGTATTATTGATCTTTATATTTACTACACATTAGACATAGACTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTATTATTGATCTTTATATTTACTACACATTAGACATAGACTAGA  100

seq1  GG--ATATATATATATATATATATATATATATATATATATATAATTTACA  148
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATATATATATATATATATATATATATATATATATATATAATTTACA  150

seq1  TAAGCCTTATGTATAAAATATATACCTATTTTAGATATAGTTAATATAAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTTATGTATAAAATATATACCTATTTTAGATATAGTTAATATAAA  200

seq1  TTATCCATAGGATTTATCCATAGAAGATAGAATTCTTCTCTGATGCACTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCATAGGATTTATCCATAGAAGATAGAATTCTTCTCTGATGCACTA  250

seq1  CACTCATGATGTGTAAGGGAGTCTCAAATAAGTCAGGTCAATAATATCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATGATGTGTAAGGGAGTCTCAAATAAGTCAGGTCAATAATATCCA  300

seq1  AATGCATTCTACCCATGTATAAAATAACCAAAGAACAAATAAAAGTATGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATTCTACCCATGTATAAAATAACCAAAGAACAAATAAAAGTATGT  350

seq1  TTTAGAATCATTTGTAGTTTGCTTCCTATGAGTCTATTGCAAATAAAATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATCATTTGTAGTTTGCTTCCTATGAGTCTATTGCAAATAAAATG  400

seq1  TAGGCCCAGGATCATTTTCAAGAACCTTAAGACTGCAGGTCGGAGAACAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCCAGGATCATTTTCAAGAACCTTAAGACTGCAGGTCGGAGAACAC  450

seq1  CCTAAGGACCAGGCATCCCCTCTTCCTGCTCCTCCTCTCAGATTACAGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGACCAGGCATCCCCTCTTCCTGCTCCTCCTCTCAGATTACAGCC  500

seq1  TCCCACATGGCCAGCACTTAGCCGAAGAACCAAAAGAAAATCCCAAGCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACATGGCCAGCACTTAGCCGAAGAACCAAAAGAAAATCCCAAGCAT  550

seq1  TCATCAGAATTTTCTGATGAGAAAGCTTACAAAGTTCAGGGAGGAATACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGAATTTTCTGATGAGAAAGCTTACAAAGTTCAGGGAGGAATACA  600

seq1  AGATGAACTGCAAGTCACTTGTGCTCTGTACAGCCATTGTGAGAAGCTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAACTGCAAGTCACTTGTGCTCTGTACAGCCATTGTGAGAAGCTCA  650

seq1  CATCTGCCCTGGAAGCAGAGGTAGACCATGACCTGCAGCTATAAACCTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCCCTGGAAGCAGAGGTAGACCATGACCTGCAGCTATAAACCTGG  700

seq1  GAGCCTAACCCTACCTCTGTCTGTGGAGCTTGCAGGCACAAAGAAACCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTAACCCTACCTCTGTCTGTGGAGCTTGCAGGCACAAAGAAACCTT  750

seq1  ATTCTTTGATTGATTCTCTAGCAGGTCACCTTCCTCCTGACCATCGGTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTGATTGATTCTCTAGCAGGTCACCTTCCTCCTGACCATCGGTAA  800

seq1  CCAGAGCTGCCTCAATTATACCCCATCAAGAAGAACAGATAACAGGAAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCTGCCTCAATTATACCCCATCAAGAAGAACAGATAACAGGAAAG  850

seq1  CCAGGTTCATGGAGACGGCTGTAATTTTAGAAGCACTTCCTGTCATGAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTCATGGAGACGGCTGTAATTTTAGAAGCACTTCCTGTCATGAGG  900

seq1  CTGACTTTTGATCTCCGGATGGTGC-AGGTCAGTGAGTTG-AAGCC-AAG  945
      ||||||||||||||||||||||||| |||||||||||||| ||||| |||
seq2  CTGACTTTTGATCTCCGGATGGTGCAAGGTCAGTGAGTTGAAAGCCAAAG  950

seq1  GCATGCATGCAT-CACTGTCT-CTGG-CTGCTGAGAACC-TGGTG--TGT  989
      |||||||||||| |||||||| |||| |||||||||||| |||||   ||
seq2  GCATGCATGCATCCACTGTCTCCTGGCCTGCTGAGAACCTTGGTGGTGGT  1000

seq1  G-CATGAC-TAGAGTCCTA-CAGGGTTCTGC-TTGAAT-CCTA-TCT-GA  1032
      | |||||| |||||| ||| ||||||||||| |||||| |||| ||| ||
seq2  GCCATGACTTAGAGTTCTACCAGGGTTCTGCTTTGAATCCCTATTCTGGA  1050

seq1  GAAGCC-CACTCT-GCT-CTCAAATA--CAGTTTGGGCAGAATTTGTTGG  1077
      ||||||  ||||| ||| ||||||||  ||||| |||||||| ||| |||
seq2  GAAGCCAAACTCTGGCTCCTCAAATAACCAGTTGGGGCAGAAATTG-TGG  1099

seq1  CAGTTCAG-ATGAACTTAAA--CTGGG--ACTTACGATGCAGTA---GTA  1119
      |||||||| |||| ||||||  |||||   ||||||||||||||    ||
seq2  CAGTTCAGAATGACCTTAAAACCTGGGGACCTTACGATGCAGTATAGATA  1149

seq1  TTAGT  1124
      |||||
seq2  TTAGT  1154


seq1: chr12_27721524_27721867
seq2: B6Ng01-194L22.g_71_414 (reverse)

seq1  ACACACACATACCTGCACATCTTTGAGACTATGCTATGAGACAGCACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATACCTGCACATCTTTGAGACTATGCTATGAGACAGCACACA  50

seq1  TTCAAAGGCACCTTTCCTGGATTTCTACCTATGGGAATTTTTTCTCTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGGCACCTTTCCTGGATTTCTACCTATGGGAATTTTTTCTCTATA  100

seq1  AATTACTCACCTTAAATATTCCTCTAAAACCAGAGGAAATGGAGCAGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTCACCTTAAATATTCCTCTAAAACCAGAGGAAATGGAGCAGTAC  150

seq1  TTTCAAATCAAAGACACCTTATCTTTTAATTAAATGAAGGTAATAAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATCAAAGACACCTTATCTTTTAATTAAATGAAGGTAATAAAGGA  200

seq1  CATCATTGTTGAAAGTAATATTATTGAGAAATAAACCATGATGAAGTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTGTTGAAAGTAATATTATTGAGAAATAAACCATGATGAAGTGAT  250

seq1  TACATAAGGAATTTTGAGGCTGGCTCTGTCATCCAAAAGGAGTTATGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAGGAATTTTGAGGCTGGCTCTGTCATCCAAAAGGAGTTATGACC  300

seq1  CTAGTGACATTGTAAGTCCTAAAGTGCAGAGTAGCAACCACAGT  344
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGACATTGTAAGTCCTAAAGTGCAGAGTAGCAACCACAGT  344


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