BAC Information

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BAC

Clone NameB6Ng01-197L12
Chromosome12 (Build37)
Map Location 27,932,187 - 28,091,890
singlet/doubletdoublet
Overlap geneSox11
Upstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneLOC100043009, LOC669327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197L12.bB6Ng01-197L12.g
ACCGA019510GA019511
length1,053572
definitionB6Ng01-197L12.b B6Ng01-197L12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,932,187 - 27,933,235)(28,091,313 - 28,091,890)
sequence
gaattcaataacatacacaaaaaagtaaaatttggaagtgtcctgggctt
tgcctgacttctgtagtccagtgctaacttcccaatggctgccagggaca
gggtcacagagatattgctactatacaaaaattacacagcagtagagcct
ggctagtttgaggagaaaaagaagattccctttgtaaaaacaaaacaaac
agacaacaacaactatgaccacagcactgcttagagacttgctatttttt
acagaccagcagtggaagggaaagtaaagggtatagcgggctcctgcctc
ttaaatgctgagatttgaaagaaagacacctgcttcaagtaggacctaac
aagagacttcttagtgctgtggccacacacagccgacacaggctctgaga
aacgctgaccctgcccaacaaccagatacactgagctccgtgagaactct
tcagctctctgccagcagacattattagctctttccttctgccctttaaa
atgttcaccccttttcaacaacagataaggccacacccatctttgtctgg
gttctggacaacctcagcatctccagcaggtcctcgggaactccgggctt
cagattcatgtgttgtacatggcagtgtacagatacaatcaaataaatgt
cattgtctgtctctatgcccagtatgcagtggtgaaatgtaattagaata
aggcccagaaatctgccttttgaagtggaaatggttttgaaatgctgaat
atcctgttgtcaactgtaaggatatcaggtttccggaacgatgtctgggt
tttattacaaccattttgtatacctaagtcctgcctcgccatttatccag
catctttttatgtattctgttttgtcctcattttgttgggtgcatcggag
ggagtctacacagtcacacatctggacacccatgggtcccttgcgactcc
ctcctcacccccagatcatggctgagatcaccacccaaaccaggcagctg
cacatcttttggtggtgaaatatgagagggaaaggaggagattgaaagaa
taa

caagagatccagggctagacagaaaaactctgcctcaaaaaacaaaacac
aaacaaaaaaaggcagggtgtcttctgaacttggagctacactggcagtc
tgcctctcatactgtgctgggttaatagacaggtcatagtcaagcacagc
tatatattttaagagttttaattttacatttgaaagacaaaggtttttaa
aacatgcttaaaaatctagaacatctttataactgctggaatatattagc
tttttcttaaaaaaaaaagaaaacttcaaaatacagcaggcaaaaagcct
ttgaatgcagtcagacatatctatacatagatttcctaggagaaggagga
ggcaagggaaggtctcaaggagttggaggagaaaatgggggtgggaggtg
gatagggtcaaatacattgtatacattcatgaaattctcaaagacggaat
tgtacttacatatagatagacaaacagaatctctcactcacacacacaca
cacacacacacacacacacacacacacacattgcaatgtataaatctagc
agtactcatctgtactcacatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_27932187_27933235
seq2: B6Ng01-197L12.b_46_1098

seq1  GAATTCAATAACATACACAAAAAAGTAAAATTTGGAAGTGTCCTGGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAACATACACAAAAAAGTAAAATTTGGAAGTGTCCTGGGCTT  50

seq1  TGCCTGACTTCTGTAGTCCAGTGCTAACTTCCCAATGGCTGCCAGGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGACTTCTGTAGTCCAGTGCTAACTTCCCAATGGCTGCCAGGGACA  100

seq1  GGGTCACAGAGATATTGCTACTATACAAAAATTACACAGCAGTAGAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACAGAGATATTGCTACTATACAAAAATTACACAGCAGTAGAGCCT  150

seq1  GGCTAGTTTGAGGAGAAAAAGAAGATTCCCTTTGTAAAAACAAAACAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGTTTGAGGAGAAAAAGAAGATTCCCTTTGTAAAAACAAAACAAAC  200

seq1  AGACAACAACAACTATGACCACAGCACTGCTTAGAGACTTGCTATTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACAACAACTATGACCACAGCACTGCTTAGAGACTTGCTATTTTTT  250

seq1  ACAGACCAGCAGTGGAAGGGAAAGTAAAGGGTATAGCGGGCTCCTGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCAGCAGTGGAAGGGAAAGTAAAGGGTATAGCGGGCTCCTGCCTC  300

seq1  TTAAATGCTGAGATTTGAAAGAAAGACACCTGCTTCAAGTAGGACCTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGCTGAGATTTGAAAGAAAGACACCTGCTTCAAGTAGGACCTAAC  350

seq1  AAGAGACTTCTTAGTGCTGTGGCCACACACAGCCGACACAGGCTCTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACTTCTTAGTGCTGTGGCCACACACAGCCGACACAGGCTCTGAGA  400

seq1  AACGCTGACCCTGCCCAACAACCAGATACACTGAGCTCCGTGAGAACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTGACCCTGCCCAACAACCAGATACACTGAGCTCCGTGAGAACTCT  450

seq1  TCAGCTCTCTGCCAGCAGACATTATTAGCTCTTTCCTTCTGCCCTTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCTCTGCCAGCAGACATTATTAGCTCTTTCCTTCTGCCCTTTAAA  500

seq1  ATGTTCACCCCTTTTCAACAACAGATAAGGCCACACCCATCTTTGTCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCACCCCTTTTCAACAACAGATAAGGCCACACCCATCTTTGTCTGG  550

seq1  GTTCTGGACAACCTCAGCATCTCCAGCAGGTCCTCGGGAACTCCGGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGACAACCTCAGCATCTCCAGCAGGTCCTCGGGAACTCCGGGCTT  600

seq1  CAGATTCATGTGTTGTACATGGCAGTGTACAGATACAATCAAATAAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCATGTGTTGTACATGGCAGTGTACAGATACAATCAAATAAATGT  650

seq1  CATTGTCTGTCTCTATGCCCAGTATGCAGTGGTGAAATGTAATTAGAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCTGTCTCTATGCCCAGTATGCAGTGGTGAAATGTAATTAGAATA  700

seq1  AGGCCCAGAAATCTGCCTTTTGAAGTGGAAATGGTTTTGAAATGCTGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAGAAATCTGCCTTTTGAAGTGGAAATGGTTTTGAAATGCTGAAT  750

seq1  ATCCTGTTGTCAACTGTAAGGATATCAGGTTTCCGGAACGATGTCTGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTTGTCAACTGTAAGGATATCAGGTTTCCGGAACGATGTCTGGGT  800

seq1  TTTATTACAACCATTTTGTATACCTAAGTCCTGCCTCGCCATTTATCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTACAACCATTTTGTATACCTAAGTCCTGCCTCGCCATTTATCCAG  850

seq1  CATCTTTTTATGTATTCTGTTTTGTCCTCA-TTTGTTGGGTGCATCGGAG  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATCTTTTTATGTATTCTGTTTTGTCCTCATTTTGTTGGGTGCATCGGAG  900

seq1  GGAGTCTACACAGTCACACATCTGGACACCCAT-GGTCCCTTGCGACTCC  948
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGAGTCTACACAGTCACACATCTGGACACCCATGGGTCCCTTGCGACTCC  950

seq1  CTCCTCACCCCCCAGATCAGGGCTGAGATCA-CACCCAACCCAGGCAGCT  997
      ||||||| ||||||||||| ||||||||||| ||||||| ||||||||||
seq2  CTCCTCA-CCCCCAGATCATGGCTGAGATCACCACCCAAACCAGGCAGCT  999

seq1  GCACATC-TTTGGT-GTGAAATATGAAGAGGGAAAGGAGGAGA-TGAAAG  1044
      ||||||| |||||| |||||||||| ||||||||||||||||| ||||||
seq2  GCACATCTTTTGGTGGTGAAATATG-AGAGGGAAAGGAGGAGATTGAAAG  1048

seq1  AATAA  1049
      |||||
seq2  AATAA  1053


seq1: chr12_28091313_28091890
seq2: B6Ng01-197L12.g_65_642 (reverse)

seq1  GTTGTGAGTACAGATGAGTACTGCTAGATTTATACATTGCAATGTGTGTG  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGAGTACAGATGAGTACTGCTAGATTTATACATTGCAATGTGTGTG  50

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGAGAGATTCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGAGAGATTCTGTT  100

seq1  TGTCTATCTATATGTAAGTACAATTCCGTCTTTGAGAATTTCATGAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATCTATATGTAAGTACAATTCCGTCTTTGAGAATTTCATGAATGT  150

seq1  ATACAATGTATTTGACCCTATCCACCTCCCACCCCCATTTTCTCCTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATGTATTTGACCCTATCCACCTCCCACCCCCATTTTCTCCTCCAA  200

seq1  CTCCTTGAGACCTTCCCTTGCCTCCTCCTTCTCCTAGGAAATCTATGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGAGACCTTCCCTTGCCTCCTCCTTCTCCTAGGAAATCTATGTAT  250

seq1  AGATATGTCTGACTGCATTCAAAGGCTTTTTGCCTGCTGTATTTTGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGTCTGACTGCATTCAAAGGCTTTTTGCCTGCTGTATTTTGAAGT  300

seq1  TTTCTTTTTTTTTTAAGAAAAAGCTAATATATTCCAGCAGTTATAAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTTTTTTAAGAAAAAGCTAATATATTCCAGCAGTTATAAAGAT  350

seq1  GTTCTAGATTTTTAAGCATGTTTTAAAAACCTTTGTCTTTCAAATGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGATTTTTAAGCATGTTTTAAAAACCTTTGTCTTTCAAATGTAAA  400

seq1  ATTAAAACTCTTAAAATATATAGCTGTGCTTGACTATGACCTGTCTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACTCTTAAAATATATAGCTGTGCTTGACTATGACCTGTCTATTA  450

seq1  ACCCAGCACAGTATGAGAGGCAGACTGCCAGTGTAGCTCCAAGTTCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCACAGTATGAGAGGCAGACTGCCAGTGTAGCTCCAAGTTCAGAA  500

seq1  GACACCCTGCCTTTTTTTGTTTGTGTTTTGTTTTTTGAGGCAGAGTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCTGCCTTTTTTTGTTTGTGTTTTGTTTTTTGAGGCAGAGTTTTT  550

seq1  CTGTCTAGCCCTGGATCTCTTGGAATTC  578
      ||||||||||||||||||||||||||||
seq2  CTGTCTAGCCCTGGATCTCTTGGAATTC  578


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