BAC Information

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BAC

Clone NameB6Ng01-198E15
Chromosome12 (Build37)
Map Location 51,733,693 - 51,734,807
singlet/doubletsinglet
Overlap genePrkcm
Upstream geneLOC665071, LOC665077, LOC100039455
Downstream geneLOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1, LOC620390, LOC100039578, Coch, Strn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198E15.bB6Ng01-198E15.g
ACCGA019925GA019926
length1,110968
definitionB6Ng01-198E15.b B6Ng01-198E15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccatgtaatttatttgttgtaccaagactttcaaagacccaag
tgcaggatgaagagatggctcagtatttaagtgttcctactgccctttaa
gaggacagaagctcagtccctagtattcatatcagaagtttcacgacgac
ctgtgattccagacctgaggggtctgacacctctggcatccacaatccac
agtctaaagtgtatgcacatactcacacacaaacaagcaagtccaaaaga
aacaatagttcctgcacctttgtgtgtgccctgtccttcagggcaggaat
gcttagaactgaatctatttaaattctggatcatgtctgcctacagtgta
gctagagttttgtcaagcctggcaatggtacatttaggctacaagagaag
tgctggtcttagcctttacacattcaaaggaatacaaggcaaatcacact
ccacactcgggaaggatgcaaactattaatggaagaaagtgtcttacttg
gcttgtgactgatcatgcactgtccggaataagtttatgtaggaggtgtt
cactcaccattgacaaaagcaagctggcaaatataaacgcatcacagaac
agacacttgcaaagcatgagccttcgcagaaggggaactgcaatatacct
tccaccaggcactttccttaaggaccccccattattttcttaaaatctgt
tcagaatcagcacgccattcaagaatgattcctttcactgatttacactg
gcagccccagatgcttgccttccattaccctttgaaccacaaagagaagt
atacagcccaacccgaatcatactccaaaaccctcttatatcatctggaa
agaagagttctgagccaacaacttaactatcatacacaaacctgacttca
gatgaataaccatctgacattttatagaaggatgaggatgaacaattgtg
atttcttatgggtgatttttcattttaaaatgacatcaaacgccaaatca
gttctactatgtgtgtattatatattatatattgtataatacacacacac
tcaccccacacacacacacacacatatatataatagtatagatatataca
tatatatatt

gaattctttgtgtagctctgagccccattttttaatgggcttatttgatt
ttctggggtctagcttcttgagctctttgtatatattagatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggttgtct
ttttgtcttattgacggtgtcttttgccttgcagaagctttgcaatttta
tgaggtcccatttgtctattctcaaacttacagaacaagccattgctgtt
ctattcaggaattttttccctgtgcccatatcttcgaggcttttccccac
tctctcctctatacgtttcaccgtctctggttttgtgtggagttccttga
tccacttagatttgaccttaacaggctgagaaagaaattagggaaacatc
acccttcacaatagtcacaaataatataaaataccttggcgcgactctaa
ccaaggaagtgaaagatctgtatgataagaacttcaagtctctgaagaaa
gaaattaaagaagatctcagaagatggaaagatctcccatgctcatggat
tggcaggatcaacaatataaaaatcactatcttgccaaaagcaatctaca
gattcaatgcaatccccatcaaaattccaactcaattcttcaacaaatta
gaaagagcaatctgcaaattcatctggaataacaaaaaacctaggatagc
aaaaagtcttctcaaggataaaagaacctctggtggaatcaccatgcctg
acctaaaactgtactacagagcaattgtgaaaaaaactgcatggtactgg
ttatagtgacagacaagtagaccaatggaatagaattgaagacccagaaa
tgaacccacacacctatggtcacttgatctttgacaagggagctaaaacc
attccagtggaaaaagacagcattttcacaaatggtgctggcacactggc
agttattcatgtagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_51733693_51734807
seq2: B6Ng01-198E15.b_47_1156

seq1  GAATTCTCCATGTAATTTATTTGTTGTACCAAGACTTTCAAAGACCCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATGTAATTTATTTGTTGTACCAAGACTTTCAAAGACCCAAG  50

seq1  TGCAGGATGAAGAGATGGCTCAGTATTTAAGTGTTCCTACTGCCCTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGATGAAGAGATGGCTCAGTATTTAAGTGTTCCTACTGCCCTTTAA  100

seq1  GAGGACAGAAGCTCAGTCCCTAGTATTCATATCAGAAGTTTCACGACGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGAAGCTCAGTCCCTAGTATTCATATCAGAAGTTTCACGACGAC  150

seq1  CTGTGATTCCAGACCTGAGGGGTCTGACACCTCTGGCATCCACAATCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATTCCAGACCTGAGGGGTCTGACACCTCTGGCATCCACAATCCAC  200

seq1  AGTCTAAAGTGTATGCACATACTCACACACAAACAAGCAAGTCCAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAAGTGTATGCACATACTCACACACAAACAAGCAAGTCCAAAAGA  250

seq1  AACAATAGTTCCTGCACCTTTGTGTGTGCCCTGTCCTTCAGGGCAGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAGTTCCTGCACCTTTGTGTGTGCCCTGTCCTTCAGGGCAGGAAT  300

seq1  GCTTAGAACTGAATCTATTTAAATTCTGGATCATGTCTGCCTACAGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGAACTGAATCTATTTAAATTCTGGATCATGTCTGCCTACAGTGTA  350

seq1  GCTAGAGTTTTGTCAAGCCTGGCAATGGTACATTTAGGCTACAAGAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGTTTTGTCAAGCCTGGCAATGGTACATTTAGGCTACAAGAGAAG  400

seq1  TGCTGGTCTTAGCCTTTACACATTCAAAGGAATACAAGGCAAATCACACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTCTTAGCCTTTACACATTCAAAGGAATACAAGGCAAATCACACT  450

seq1  CCACACTCGGGAAGGATGCAAACTATTAATGGAAGAAAGTGTCTTACTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTCGGGAAGGATGCAAACTATTAATGGAAGAAAGTGTCTTACTTG  500

seq1  GCTTGTGACTGATCATGCACTGTCCGGAATAAGTTTATGTAGGAGGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGACTGATCATGCACTGTCCGGAATAAGTTTATGTAGGAGGTGTT  550

seq1  CACTCACCATTGACAAAAGCAAGCTGGCAAATATAAACGCATCACAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACCATTGACAAAAGCAAGCTGGCAAATATAAACGCATCACAGAAC  600

seq1  AGACACTTGCAAAGCATGAGCCTTCGCAGAAGGGGAACTGCAATATACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTTGCAAAGCATGAGCCTTCGCAGAAGGGGAACTGCAATATACCT  650

seq1  TCCACCAGGCACTTTCCTTAAGGACCCCCCATTATTTTCTTAAAATCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCAGGCACTTTCCTTAAGGACCCCCCATTATTTTCTTAAAATCTGT  700

seq1  TCAGAATCAGCACGCCATTCAAGAATGATTCCTTTCACTGATTTACACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATCAGCACGCCATTCAAGAATGATTCCTTTCACTGATTTACACTG  750

seq1  GCAG-CCCAGATGCTTGCCTTCCATTACCC-TTGAACCACAAAGAGAAGT  798
      |||| ||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCAGCCCCAGATGCTTGCCTTCCATTACCCTTTGAACCACAAAGAGAAGT  800

seq1  ATACAGCCCAACCCGAATCATACTCCAAAACCCTCTTATATCA-CTGGAA  847
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATACAGCCCAACCCGAATCATACTCCAAAACCCTCTTATATCATCTGGAA  850

seq1  GGAAGAGTTCTGAGCCAACAACTTAACTATCATACAC-AACCTGACTTCA  896
       |||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAAGAGTTCTGAGCCAACAACTTAACTATCATACACAAACCTGACTTCA  900

seq1  GATGAATAACCATCTGACA-TTTATAGAAGGATGAGGATGAACAATTGTG  945
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GATGAATAACCATCTGACATTTTATAGAAGGATGAGGATGAACAATTGTG  950

seq1  A-TTCTTAT-GGTGA-TTTTCATTTTAAAATGACATCAAACGCCAAATCA  992
      | ||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  ATTTCTTATGGGTGATTTTTCATTTTAAAATGACATCAAACGCCAAATCA  1000

seq1  GTTCTACTATGTGTGTA-TATATA-TATATATTGTATAATACACACACAC  1040
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  GTTCTACTATGTGTGTATTATATATTATATATTGTATAATACACACACAC  1050

seq1  ACACACACACACACACACACACACATATATATATATA-TATATATATATA  1089
       ||| | |||||||||||||||||||||||||| ||| |||| |||||||
seq2  TCAC-CCCACACACACACACACACATATATATA-ATAGTATAGATATATA  1098

seq1  TATATATATATATATATATATATATT  1115
       ||||||||||               
seq2  CATATATATATT--------------  1110


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