BAC Information

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BAC

Clone NameB6Ng01-198O19
Chromosome12 (Build37)
Map Location 90,530,756 - 90,625,642
singlet/doubletdoublet
Overlap geneNrxn3
Upstream geneLOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915
Downstream geneLOC100039498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198O19.bB6Ng01-198O19.g
ACCGA020392GA020393
length1,1581,172
definitionB6Ng01-198O19.b B6Ng01-198O19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,530,756 - 90,531,897)(90,624,476 - 90,625,642)
sequence
gaattctccaactttctttttttttaatgtggctctccctttctctttcc
ctttccccctctgtcattccatacattccttacttccttcagtcattcct
tcccacctattactttcagcaggtcgctgtgttgtctatgctggtctcag
tatccagttgattctctctcctccaccttccaagaactgagactcatcat
ctccttttgccttctcctacttccatctccacaatcaggaattgtttgtt
tgtttcattttcataagttctgtagaatatgccattgcatcaagacacaa
ccctaatttgaaaactaatctattttatactaatccttcattatacttct
actagctgattgctctgaaacttgaagttcacccttctgacacaagcatc
ttctcttaaagtgagggttgcctctctccttaatgatcttctctgcctcc
tcagcttttccttcctatgctgatgtgtctccccatccctcatgatgtca
tccaaaggttttactcatggaagggctttctgtcattccagcttggatcc
agtccttattctgcatcgatgatctccattgatgatctgtattaatgatc
tgtattgatgatctgtattgatgatcattcttattcacattctttcatgt
tcattttaatatatcaggcaacacctgtattctccttgtatgattgaaga
aaatgcacattttagggaggatgtagggagaagctttgtgcatcttttct
atcactctcattaaattgtatctgatcaacatatgctgaattctctgtat
tgggtgatgtgttattttcaggcatatataaaagtaaatatggaagaaac
ttttgctttccaggaccttcaagagtgattatggaaccccaaggggagct
ccaggtcagggtagctgcaggtcagtttagcctaggcactgagagcattg
actaggagttaaaccataataaaagacataacacattcccagactcaaag
caaagaaaaagttatgttcctaatagaaaaatagtattgaccaagggtta
gagttcaagaagaaacatgataaaaaaattgaccatggtatggattaaac
aggtaagggatttccatttctcaagaatatataaagttacctgttagaac
tacttaaa

gaattcaacaccaactcccaagcactcagcctgccacatctgtgctccgt
ggatcacaattgaaagaacaaagctcagagcacagtcaggctcgtttctc
tagtgcaaagccacttccttcttgtctccagtatctgctttactgacgcc
tttcccctgtaggagtccactcacctgcctaaggcagagaagaagctcag
tcacacagcacattacatagtgcacataccaaccaggtactgccccagac
catgaatggggctggaatggggctggagagaggaacttagctttaaccct
cagacaaaagcagttgcccttattcttctctgcccataacttcaggaata
tcattagacttttatgctaacaaagattgaccaccgaagtctttgggaag
tttccagacttatttatagtttaggattataaaactttctgtctcagaca
ccttcatgtatttgttcagattagtcagatctgagaactaggttaagaga
ctattaaaataaacaagcaaacaaacaaacaaacacaggttttccattct
gagtgctgggccaaagatctgggaaaatttctttttctcaaaaaagaaca
ccaatgcttgggtaatttttttccctcattttctgaggcaatgatagcta
aggtttccaggccctaattacatgaagcaatggctttgggctgggccaat
agagcatggaatgaagactttcttttaatttgccatgtcctttactgcaa
agatctggatcttaatgaattgaggtaaagctatgtagaatatcctagat
agaactgtatgacagtttggtgtgttttgcatgtataaggccctgggttt
catactcagaatgaaagaaaggagaaatgtaaaagtagaaaggaaggatg
caaaggaggaaaggatctaggaaagaagagcagtcgggaggagaagaaag
gtggctcaggagactggagcccttcattatccatgcaaagcagattttct
tactacttagtgttcaactttcaggaggatctagaatccactataagaga
agcagaaccttggtgaggggccttgtcaagattgtctatcagatagaatg
atcctatgagggccagtgctattctttgactggtaactggctgtatggaa
cagaatagcaagcttatggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_90530756_90531897
seq2: B6Ng01-198O19.b_49_1206

seq1  GAATTCTCCAACTTTCTTTTTTTTTAATGTGGCTCTCCCTTTCTCTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAACTTTCTTTTTTTTTAATGTGGCTCTCCCTTTCTCTTTCC  50

seq1  CTTTCCCCCTCTGTCATTCCATACATTCCTTACTTCCTTCAGTCATTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCCTCTGTCATTCCATACATTCCTTACTTCCTTCAGTCATTCCT  100

seq1  TCCCACCTATTACTTTCAGCAGGTCGCTGTGTTGTCTATGCTGGTCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCTATTACTTTCAGCAGGTCGCTGTGTTGTCTATGCTGGTCTCAG  150

seq1  TATCCAGTTGATTCTCTCTCCTCCACCTTCCAAGAACTGAGACTCATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGTTGATTCTCTCTCCTCCACCTTCCAAGAACTGAGACTCATCAT  200

seq1  CTCCTTTTGCCTTCTCCTACTTCCATCTCCACAATCAGGAATTGTTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTGCCTTCTCCTACTTCCATCTCCACAATCAGGAATTGTTTGTT  250

seq1  TGTTTCATTTTCATAAGTTCTGTAGAATATGCCATTGCATCAAGACACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCATTTTCATAAGTTCTGTAGAATATGCCATTGCATCAAGACACAA  300

seq1  CCCTAATTTGAAAACTAATCTATTTTATACTAATCCTTCATTATACTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATTTGAAAACTAATCTATTTTATACTAATCCTTCATTATACTTCT  350

seq1  ACTAGCTGATTGCTCTGAAACTTGAAGTTCACCCTTCTGACACAAGCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTGATTGCTCTGAAACTTGAAGTTCACCCTTCTGACACAAGCATC  400

seq1  TTCTCTTAAAGTGAGGGTTGCCTCTCTCCTTAATGATCTTCTCTGCCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTAAAGTGAGGGTTGCCTCTCTCCTTAATGATCTTCTCTGCCTCC  450

seq1  TCAGCTTTTCCTTCCTATGCTGATGTGTCTCCCCATCCCTCATGATGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTTTCCTTCCTATGCTGATGTGTCTCCCCATCCCTCATGATGTCA  500

seq1  TCCAAAGGTTTTACTCATGGAAGGGCTTTCTGTCATTCCAGCTTGGATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGGTTTTACTCATGGAAGGGCTTTCTGTCATTCCAGCTTGGATCC  550

seq1  AGTCCTTATTCTGCATCGATGATCTCCATTGATGATCTGTATTAATGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTATTCTGCATCGATGATCTCCATTGATGATCTGTATTAATGATC  600

seq1  TGTATTGATGATCTGTATTGATGATCATTCTTATTCACATTCTTTCATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGATGATCTGTATTGATGATCATTCTTATTCACATTCTTTCATGT  650

seq1  TCATTTTAATATATCAGGCAACACCTGTATTCTCCTTGTATGATTGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTAATATATCAGGCAACACCTGTATTCTCCTTGTATGATTGAAGA  700

seq1  AAATGCACATTTTAGGGAGGATGTAGGGAGAAGCTTTGTGCATCTTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCACATTTTAGGGAGGATGTAGGGAGAAGCTTTGTGCATCTTTTCT  750

seq1  ATCACTCTCATTAAATTGTATCTGATCAACATATGCTGAATTCTCTGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCTCATTAAATTGTATCTGATCAACATATGCTGAATTCTCTGTAT  800

seq1  TGGGTGATGTGTTATTTTCAGGCATATATAAAAGTAAATATGGAAGAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGATGTGTTATTTTCAGGCATATATAAAAGTAAATATGGAAGAAAC  850

seq1  TTTTGCTTTCCAGGACCTTCAAGAGTGATTATGGAACCCCAAGGGGAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTTCCAGGACCTTCAAGAGTGATTATGGAACCCCAAGGGGAGCT  900

seq1  CCAGGTCAGGGTAGCTGCAGGTCAGGTTAGCCTAGGCACTGAGAGCATTG  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCAGGTCAGGGTAGCTGCAGGTCAGTTTAGCCTAGGCACTGAGAGCATTG  950

seq1  ACTAGGAGTT-AACCATAAT-AAAGACATAACACATTCCCAGACTCAAAG  998
      |||||||||| ||||||||| |||||||||||||||||||||||||||||
seq2  ACTAGGAGTTAAACCATAATAAAAGACATAACACATTCCCAGACTCAAAG  1000

seq1  CAAAGAAAAAG-TATG-TCCTATAAGAAAAATAGTATTGACAAAGGG-TA  1045
      ||||||||||| |||| |||||  ||||||||||||||||| ||||| ||
seq2  CAAAGAAAAAGTTATGTTCCTAATAGAAAAATAGTATTGACCAAGGGTTA  1050

seq1  GAG-TCAAGAAGGAAACATGAT-AAAAAATTGA-CATGGTATG--ATAAA  1090
      ||| ||||||| |||||||||| |||||||||| |||||||||   ||||
seq2  GAGTTCAAGAA-GAAACATGATAAAAAAATTGACCATGGTATGGATTAAA  1099

seq1  CAAGTTAGGGA-TTCCA-TTCTCAAG---ATAATAAG-TACCTGTTAG-A  1133
      || || ||||| ||||| ||||||||   |||  ||| |||||||||| |
seq2  CAGGTAAGGGATTTCCATTTCTCAAGAATATATAAAGTTACCTGTTAGAA  1149

seq1  GTACTTAAA  1142
       ||||||||
seq2  CTACTTAAA  1158


seq1: chr12_90624476_90625642
seq2: B6Ng01-198O19.g_66_1237 (reverse)

seq1  CCCCCATTAGCTTGCTATTCTTGTTCCATTCAGGCCAGGTTACCAGCCCA  50
      ||||||| |||||||||||| |||||||| || |||| ||||||||  ||
seq2  CCCCCATAAGCTTGCTATTC-TGTTCCATACA-GCCA-GTTACCAG-TCA  46

seq1  AAGAATAGCACTGCCCTCCATTAGGATCATTCTATCTTGATAGACCAAAT  100
      ||||||||||||| ||  || ||||||||||||||| ||||||||  |||
seq2  AAGAATAGCACTGGCCCTCA-TAGGATCATTCTATC-TGATAGAC--AAT  92

seq1  CCTGACA--GCCCCTCAC--AGG-TCTGCTTCTC-TATAGTGGATTCTAG  144
      | |||||  |||||||||  ||| |||||||||| |||||||||||||||
seq2  CTTGACAAGGCCCCTCACCAAGGTTCTGCTTCTCTTATAGTGGATTCTAG  142

seq1  ATCCT-CTG-AAGTTG-ACACTAAGTAGTAAG-AAATCTGCTTTGCATGG  190
      ||||| ||| |||||| ||||||||||||||| |||||||||||||||||
seq2  ATCCTCCTGAAAGTTGAACACTAAGTAGTAAGAAAATCTGCTTTGCATGG  192

seq1  AT-ATGAA-GGCTCCAGTCTCCTGAGCCACCTTTC-TCTCCTCCCGACTG  237
      || ||||| |||||||||||||||||||||||||| ||||||||||||||
seq2  ATAATGAAGGGCTCCAGTCTCCTGAGCCACCTTTCTTCTCCTCCCGACTG  242

seq1  CTCTTCTTTCCTAGATCCTTTCCTCCTTTGCATCCTTCCTTTCTACTTTT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTTCCTAGATCCTTTCCTCCTTTGCATCCTTCCTTTCTACTTTT  292

seq1  ACATTTCTCCTTTCTTTCATTCTGAGTATGAAACCCAGGGCCTTATACAT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTCCTTTCTTTCATTCTGAGTATGAAACCCAGGGCCTTATACAT  342

seq1  GCAAAACACACCAAACTGTCATACAGTTCTATCTAGGATATTCTACATAG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACACACCAAACTGTCATACAGTTCTATCTAGGATATTCTACATAG  392

seq1  CTTTACCTCAATTCATTAAGATCCAGATCTTTGCAGTAAAGGACATGGCA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCTCAATTCATTAAGATCCAGATCTTTGCAGTAAAGGACATGGCA  442

seq1  AATTAAAAGAAAGTCTTCATTCCATGCTCTATTGGCCCAGCCCAAAGCCA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAGAAAGTCTTCATTCCATGCTCTATTGGCCCAGCCCAAAGCCA  492

seq1  TTGCTTCATGTAATTAGGGCCTGGAAACCTTAGCTATCATTGCCTCAGAA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCATGTAATTAGGGCCTGGAAACCTTAGCTATCATTGCCTCAGAA  542

seq1  AATGAGGGAAAAAAATTACCCAAGCATTGGTGTTCTTTTTTGAGAAAAAG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGGAAAAAAATTACCCAAGCATTGGTGTTCTTTTTTGAGAAAAAG  592

seq1  AAATTTTCCCAGATCTTTGGCCCAGCACTCAGAATGGAAAACCTGTGTTT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCCCAGATCTTTGGCCCAGCACTCAGAATGGAAAACCTGTGTTT  642

seq1  GTTTGTTTGTTTGCTTGTTTATTTTAATAGTCTCTTAACCTAGTTCTCAG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTGCTTGTTTATTTTAATAGTCTCTTAACCTAGTTCTCAG  692

seq1  ATCTGACTAATCTGAACAAATACATGAAGGTGTCTGAGACAGAAAGTTTT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACTAATCTGAACAAATACATGAAGGTGTCTGAGACAGAAAGTTTT  742

seq1  ATAATCCTAAACTATAAATAAGTCTGGAAACTTCCCAAAGACTTCGGTGG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCTAAACTATAAATAAGTCTGGAAACTTCCCAAAGACTTCGGTGG  792

seq1  TCAATCTTTGTTAGCATAAAAGTCTAATGATATTCCTGAAGTTATGGGCA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTTTGTTAGCATAAAAGTCTAATGATATTCCTGAAGTTATGGGCA  842

seq1  GAGAAGAATAAGGGCAACTGCTTTTGTCTGAGGGTTAAAGCTAAGTTCCT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAATAAGGGCAACTGCTTTTGTCTGAGGGTTAAAGCTAAGTTCCT  892

seq1  CTCTCCAGCCCCATTCCAGCCCCATTCATGGTCTGGGGCAGTACCTGGTT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGCCCCATTCCAGCCCCATTCATGGTCTGGGGCAGTACCTGGTT  942

seq1  GGTATGTGCACTATGTAATGTGCTGTGTGACTGAGCTTCTTCTCTGCCTT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTGCACTATGTAATGTGCTGTGTGACTGAGCTTCTTCTCTGCCTT  992

seq1  AGGCAGGTGAGTGGACTCCTACAGGGGAAAGGCGTCAGTAAAGCAGATAC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTGAGTGGACTCCTACAGGGGAAAGGCGTCAGTAAAGCAGATAC  1042

seq1  TGGAGACAAGAAGGAAGTGGCTTTGCACTAGAGAAACGAGCCTGACTGTG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAAGAAGGAAGTGGCTTTGCACTAGAGAAACGAGCCTGACTGTG  1092

seq1  CTCTGAGCTTTGTTCTTTCAATTGTGATCCACGGAGCACAGATGTGGCAG  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGCTTTGTTCTTTCAATTGTGATCCACGGAGCACAGATGTGGCAG  1142

seq1  GCTGAGTGCTTGGGAGTTGGTGTTGAATTC  1167
      ||||||||||||||||||||||||||||||
seq2  GCTGAGTGCTTGGGAGTTGGTGTTGAATTC  1172


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