BAC Information

Click to search

BAC

Clone NameB6Ng01-209J05
Chromosome12 (Build37)
Map Location 48,200,678 - 48,349,031
singlet/doubletdoublet
Overlap geneLOC100039190
Upstream geneLOC664952, Nova1
Downstream geneEG664891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209J05.bB6Ng01-209J05.g
ACCGA028157GA028158
length1,1931,065
definitionB6Ng01-209J05.b B6Ng01-209J05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,347,832 - 48,349,031)(48,200,678 - 48,201,759)
sequence
gaattcattataaaaatatctaaagatgatttgaagtatataaggtacta
tcatctgttacatcaacatatcaagttgtttatttaaggagtttaatctg
tagattcggaatattaatgttccaggggacaatatggagaccagtgaatt
tgcagatatattctgtgataatcatttctcaaattaaatattttgcagca
aagagctagtgtacagaattaaaaatttataaaaccaaaagttgtgtttt
gaggaacatggaacaaagacaatatttagtataaagcaagaaatctttta
aatattccttcattaaaaatatatggaggccttatgtttacaaagtcttt
atgcttaagtcagtgaattttaatatcttttctacttaaaattttgcaat
ttgagagtaaatgctattatacagtaattgctgctataacaggtttgaaa
gatccctgattcacattcaaataatataggaaaacaaggataataacctc
aagtaaacccaaagaagatagcaaaagagatttaaactgactggaagact
gtacaataggcaacctaaaagtatctttagtttaaatttttaaaaggctt
atttcttgcaatggataattcggtttaatttgaggtctttaagcttacag
gaataaacctgtaatgctaccccagatctaactaatatcttttgatatga
gaactatgtaagtatgagctaagtgtactttgcatacattcaggtaatgt
ttctgagcatattacacctacatatgctatgcaaaatgtttcagaagatt
aaattaccctagacacatttgggaagctgcagtatgtctgtcattgcatg
taaacatatgcagatttatgcaaaatatcctcaactatgtgtacctaatg
tcccaaactccccacagacatgcaaagccagaaggtttttgtttagtttc
aaattattggaaaatatataaatgagagtaagtaattgatatgggttatt
tcaattttcaaattttggggcattctagtgggatctgtgtatcttttgta
tacgtttttcttttttttgtagtcattcaagaaaacaattatattcattg
taatagttcataacagtagattcaatagaagcacaattttcctattttgc
ttcgagtctcgtagaagagtctgcaagagagtccggtgtttct

gaattccatgagaaatgccatcagaaaagcaaagggaggttatgatgaga
gacccaaaaggaagatgtaaatgtaaataggagggaaggcatcagatttc
ctgaagctgtaagccagaaaatgctacattctagaggaatcaccaaaatg
tgagaggcataaaggatattccatggagcatttggataacttgactctgt
caaatccttccattcgatttcttatctccagaactgtcagaaagtaaatt
ctatttgctttaagctagtaagttttcaataacttatcacgccctaagaa
attaatgtattgttattttaagcaatgtcaaaatctccccctctctcttt
gtgtgtgtatgtttgtacgagcaagcgtgcatgcacgtgcatgtttgtat
catagttcaatatgttgaaaagtttgactcctttctatgcagtgattagt
gatccagattttatctgtcacaagactgtggaattctcaacaaatgactt
ttaaaatttctgtataagaaaagatgggggatcatacacagttttggttt
tgtttttgctttgttttgttttgttttggtttttttttttttttttttga
ccatatgttgaaattgtatagaacttttctcacatgtagactaaaacaat
aagaactcaatgaaaaatcctaaacataatcaaaagagtgcataaaaaat
atgctcttctgtgtgccaagaaatcttacacgcgttctcgcgaccggcca
ggaaagacgcaacaaaccggaatcttctgcggcaaaagctttattgctta
catcttcaggagcaagagagcaagagcaagagagcaagagagagaatggt
gaaacccgtccttttaaggagaattatcctctgcctaggacgtgtcactc
cctgatggctgcagcccatcggccgagttgtcgtcacgggaagcaggtca
catgggttggagaactaccctgcacatgcgcaaattatttgtttaccacc
ttagaaccaagatgtcagcaccatcttgtatggcgatgtgagcgctccca
caagaagagtatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_48347832_48349031
seq2: B6Ng01-209J05.b_41_1233 (reverse)

seq1  AGAAACA-CGGACTC-CTTCCAAGGACTCTTCTACGGAGGACTTCTAGAA  48
      ||||||| ||||||| ||| ||  ||||||||||| |||     || |||
seq2  AGAAACACCGGACTCTCTTGCA--GACTCTTCTAC-GAG----ACTCGAA  43

seq1  GC-AAATA-GAAAATTGTGCTTCTATTGATTCTACTG-TATGAACTATTA  95
      || ||||| |||||||||||||||||||| ||||||| ||||||||||||
seq2  GCAAAATAGGAAAATTGTGCTTCTATTGAATCTACTGTTATGAACTATTA  93

seq1  CAAATGAATATAATTGTTTTC-TGAATGACTTAACAAAAAAAGAAAAACG  144
      | ||||||||||||||||||| |||||||| ||  |||||||||||||||
seq2  C-AATGAATATAATTGTTTTCTTGAATGAC-TACAAAAAAAAGAAAAACG  141

seq1  TAATACAAAAGATACACCAAGATCCCACTAGAATGCCCCAAAATTTGAAA  194
      | |||||||||||||||  |||||||||||||||||||||||||||||||
seq2  T-ATACAAAAGATACAC--AGATCCCACTAGAATGCCCCAAAATTTGAAA  188

seq1  ATTTGAAATAA-CCATATCAATTTACTTACTCTCATTTATATATTTTCCA  243
      | ||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  A-TTGAAATAACCCATATCAA-TTACTTACTCTCATTTATATATTTTCCA  236

seq1  ATAATTTGAAACTAAACAAAAACCTTCTGGCTTTGCATGTCTGTGGGGAG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTGAAACTAAACAAAAACCTTCTGGCTTTGCATGTCTGTGGGGAG  286

seq1  TTTGGGACATTAGGTACACATAGTTGAGGATATTTTGCATAAATCTGCAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGACATTAGGTACACATAGTTGAGGATATTTTGCATAAATCTGCAT  336

seq1  ATGTTTACATGCAATGACAGACATACTGCAGCTTCCCAAATGTGTCTAGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTACATGCAATGACAGACATACTGCAGCTTCCCAAATGTGTCTAGG  386

seq1  GTAATTTAATCTTCTGAAACATTTTGCATAGCATATGTAGGTGTAATATG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTAATCTTCTGAAACATTTTGCATAGCATATGTAGGTGTAATATG  436

seq1  CTCAGAAACATTACCTGAATGTATGCAAAGTACACTTAGCTCATACTTAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAACATTACCTGAATGTATGCAAAGTACACTTAGCTCATACTTAC  486

seq1  ATAGTTCTCATATCAAAAGATATTAGTTAGATCTGGGGTAGCATTACAGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCTCATATCAAAAGATATTAGTTAGATCTGGGGTAGCATTACAGG  536

seq1  TTTATTCCTGTAAGCTTAAAGACCTCAAATTAAACCGAATTATCCATTGC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCTGTAAGCTTAAAGACCTCAAATTAAACCGAATTATCCATTGC  586

seq1  AAGAAATAAGCCTTTTAAAAATTTAAACTAAAGATACTTTTAGGTTGCCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAAGCCTTTTAAAAATTTAAACTAAAGATACTTTTAGGTTGCCT  636

seq1  ATTGTACAGTCTTCCAGTCAGTTTAAATCTCTTTTGCTATCTTCTTTGGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACAGTCTTCCAGTCAGTTTAAATCTCTTTTGCTATCTTCTTTGGG  686

seq1  TTTACTTGAGGTTATTATCCTTGTTTTCCTATATTATTTGAATGTGAATC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTGAGGTTATTATCCTTGTTTTCCTATATTATTTGAATGTGAATC  736

seq1  AGGGATCTTTCAAACCTGTTATAGCAGCAATTACTGTATAATAGCATTTA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCTTTCAAACCTGTTATAGCAGCAATTACTGTATAATAGCATTTA  786

seq1  CTCTCAAATTGCAAAATTTTAAGTAGAAAAGATATTAAAATTCACTGACT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAATTGCAAAATTTTAAGTAGAAAAGATATTAAAATTCACTGACT  836

seq1  TAAGCATAAAGACTTTGTAAACATAAGGCCTCCATATATTTTTAATGAAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATAAAGACTTTGTAAACATAAGGCCTCCATATATTTTTAATGAAG  886

seq1  GAATATTTAAAAGATTTCTTGCTTTATACTAAATATTGTCTTTGTTCCAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTAAAAGATTTCTTGCTTTATACTAAATATTGTCTTTGTTCCAT  936

seq1  GTTCCTCAAAACACAACTTTTGGTTTTATAAATTTTTAATTCTGTACACT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCAAAACACAACTTTTGGTTTTATAAATTTTTAATTCTGTACACT  986

seq1  AGCTCTTTGCTGCAAAATATTTAATTTGAGAAATGATTATCACAGAATAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTGCTGCAAAATATTTAATTTGAGAAATGATTATCACAGAATAT  1036

seq1  ATCTGCAAATTCACTGGTCTCCATATTGTCCCCTGGAACATTAATATTCC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAAATTCACTGGTCTCCATATTGTCCCCTGGAACATTAATATTCC  1086

seq1  GAATCTACAGATTAAACTCCTTAAATAAACAACTTGATATGTTGATGTAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTACAGATTAAACTCCTTAAATAAACAACTTGATATGTTGATGTAA  1136

seq1  CAGATGATAGTACCTTATATACTTCAAATCATCTTTAGATATTTTTATAA  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGATAGTACCTTATATACTTCAAATCATCTTTAGATATTTTTATAA  1186

seq1  TGAATTC  1200
      |||||||
seq2  TGAATTC  1193


seq1: chr12_48200678_48201759
seq2: B6Ng01-209J05.g_64_1128

seq1  GAATTCCATGAGAAATGCCATCAGAAAAGCAAAGGGAGGTTATGATGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAGAAATGCCATCAGAAAAGCAAAGGGAGGTTATGATGAGA  50

seq1  GACCCAAAAGGAAGATGTAAATGTAAATAGGAGGGAAGGCATCAGATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAAAAGGAAGATGTAAATGTAAATAGGAGGGAAGGCATCAGATTTC  100

seq1  CTGAAGCTGTAAGCCAGAAAATGCTACATTCTAGAGGAATCACCAAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCTGTAAGCCAGAAAATGCTACATTCTAGAGGAATCACCAAAATG  150

seq1  TGAGAGGCATAAAGGATATTCCATGGAGCATTTGGATAACTTGACTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGCATAAAGGATATTCCATGGAGCATTTGGATAACTTGACTCTGT  200

seq1  CAAATCCTTCCATTCGATTTCTTATCTCCAGAACTGTCAGAAAGTAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCTTCCATTCGATTTCTTATCTCCAGAACTGTCAGAAAGTAAATT  250

seq1  CTATTTGCTTTAAGCTAGTAAGTTTTCAATAACTTATCACGTCCTAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTATTTGCTTTAAGCTAGTAAGTTTTCAATAACTTATCACGCCCTAAGAA  300

seq1  ATTAATGTATTGTTATTTTAAGCAATGTCAAAATCTCCCCCTCTCTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTATTGTTATTTTAAGCAATGTCAAAATCTCCCCCTCTCTCTTT  350

seq1  GTGTGTGTATGTTTGTACGAGCAAGCGTGCATGCACGTGCATGTTTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTATGTTTGTACGAGCAAGCGTGCATGCACGTGCATGTTTGTAT  400

seq1  CATAGTTCAATATGTTGAAAAGTTTGACTCCTTTCTATGCAGTGATTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTCAATATGTTGAAAAGTTTGACTCCTTTCTATGCAGTGATTAGT  450

seq1  GATCCAGATTTTATCTGTCACAAGACTGTGGAATTCTCAACAAATGACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGATTTTATCTGTCACAAGACTGTGGAATTCTCAACAAATGACTT  500

seq1  TTAAAATTTCTGTATAAGAAAAGATGGGGGATCATACACAGTTTTGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTTCTGTATAAGAAAAGATGGGGGATCATACACAGTTTTGGTTT  550

seq1  TGTTTTTGCTTTGTTTTGTTTTGTTTTGGTTTTTTTTTTTTTTTTTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGCTTTGTTTTGTTTTGTTTTGGTTTTTTTTTTTTTTTTTTTGA  600

seq1  CCATATGTTGAAATTGTATAGAACTTTTCTCACATGTAGACTAAAACAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGTTGAAATTGTATAGAACTTTTCTCACATGTAGACTAAAACAAT  650

seq1  AAGAACTCAATGAAAAATCCTAAACATAATCAAAAGAGTGCATAAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTCAATGAAAAATCCTAAACATAATCAAAAGAGTGCATAAAAAAT  700

seq1  ATGCTCTTCTGTGTGCCAAGAAATCTTACACGCGTTCTCGCGACCGGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTTCTGTGTGCCAAGAAATCTTACACGCGTTCTCGCGACCGGCCA  750

seq1  GGAAAGACGCAACAAACCGGAATCTTCTGCGGCAAAAGCTTTATTGCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGACGCAACAAACCGGAATCTTCTGCGGCAAAAGCTTTATTGCTTA  800

seq1  CATCTTCAGGAGCAAGAGAGCAAGAGCAAGAGAGCAAGAGAGAGAATGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCAGGAGCAAGAGAGCAAGAGCAAGAGAGCAAGAGAGAGAATGGT  850

seq1  GAAACCCCGTCCCTTTTAAGGAGAATTATCCTCTGCCTAGGACGTGTCAC  900
      |||| ||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAAA-CCCGT-CCTTTTAAGGAGAATTATCCTCTGCCTAGGACGTGTCAC  898

seq1  TCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGTCGTCACGGGGAAGGCA  950
      ||||||| |||||||||||||||||||||||||||||||||||  | |||
seq2  TCCCTGA-TGGCTGCAGCCCATCGGCCGAGTTGTCGTCACGGG--AAGCA  945

seq1  GGGCACATGGGGTGGAGAACTACCCTTGGCACATGCGCAGATTATTTGTT  1000
      || |||||||| ||||||||||||||  ||||||||||| ||||||||||
seq2  GGTCACATGGGTTGGAGAACTACCCT--GCACATGCGCAAATTATTTGTT  993

seq1  TACCA-CTTAGAACACAGGATGTCAGCACCATCTTGTAATGGCGAATGTG  1049
      ||||| |||||||| || ||||||||||||||||||| |||||| |||||
seq2  TACCACCTTAGAAC-CAAGATGTCAGCACCATCTTGT-ATGGCG-ATGTG  1040

seq1  AGGGCGGCTCCCCACAAAGAAAGGAAGTATTTT  1082
      || ||     ||||| |||||    ||||||||
seq2  AGCGC----TCCCAC-AAGAA---GAGTATTTT  1065


| Home | SequenceCutter | Blast | Download |