BAC Information

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BAC

Clone NameB6Ng01-211M12
Chromosome12 (Build37)
Map Location 50,402,581 - 50,531,933
singlet/doubletdoublet
Overlap geneLOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424
Upstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036
Downstream geneLOC665071, LOC665077, LOC100039455, Prkcm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211M12.bB6Ng01-211M12.g
ACCGA029746GA029747
length1,122982
definitionB6Ng01-211M12.b B6Ng01-211M12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,530,791 - 50,531,933)(50,402,581 - 50,403,336)
sequence
gaattctcaatcactaaatgtaggttagttctgaaatctcaaaattaaac
tatattggaatttaaactatctatggattataactgagcatttgatgaat
ggaagatagtattttcttataatttgaaagggtagaataacaacctataa
ctgatagtggcctttgcataacagacagatatacaatagtttgtaagtta
aaatgtgtttaatacatatacaaaatcaaaagatacgaaaacaaagatga
gagttaaaattctatttcatttaaatttgaagaaataatatttataatag
cataattaatattttggatttttctagcaggtacagaaatgtcattgtgg
tatgaatataaattgttttgttcatgttgctatgaaaatacacatttgga
tatgtaaatttcaaaggaaggatgtccgtttccaggggaaaaccatccct
tttaaagacaataatatatattcaagctttccttcatgaaggtaatattt
cttgtctgagtcaacatactctaccatttttaaacttttctcatcatatt
tttgacagcaggttttctaattttgacagctttttagaagtaattttaac
agccgagtgatttctcttctaagcaaagtcagattatgtgaaatgtcaat
gcaaaaactatagactttgacacataaccattttacttgaatttacttat
taattttgcttgatattactaataaaatgtaagtgcttagctaattgtat
ttctttctgaatattttaatagtatctgaaggggtattcttttctacaaa
gcttctacttgcataatcaaagaggaggggagagtattacatggctagga
agacaacaggcaattgagagatggagtactgtggagactgtaaattgagt
gtgcaagtcttccttgtccttaactagtaggaagatagacattaattccc
tggaggaaacacactctctttttcttgactcaaatccctggaccatttac
taaaatcaacgagcaaactgggagtagagttgggagaccctgcagatgca
cagagacctggaggtgaagaatatcggactcaagcagacctagatgaaat
gtctgacgtacggagagggaac

gaattcagcttttacctctttcattaatactggattttgtgactatagaa
ggaaggtgaaagggaaaaaagaaaagaagaggaagaagagaatgatgaag
atgaggagaagaaagatggtttgctttcctgtcacctgatgtctttcagc
tgctgtgcctgggaagtcctgacaccaccatcttattgaaagcacaattt
gccttttcccaaaactaagtaccataataaaatagtggtacacatgaatc
ataataaaaaagaataataggaatagaagtttccagctcaaaaacctgca
aaatatactgaacaacatcatagaaggaaatagtcctaactaaaagaagg
acatgattgtaaaggtacacaaagcatattgaacaccaaataccaaatag
aatcgttcagaagataaaacccccaggccacataataatcaaaacactaa
atatacagacgggaaaaaaaaaagagtattaaaagcctcaagccaaaaag
gccaagtaacaaataaagacactaaaagtcagaaggacctgacatgtctt
gcagactctaagaggtcacagatgccacttatattattataaccaacaaa
actttcaatcaacatacaggcagaaaacaagatatttcatgacaaagtca
aatttaaacaatatctattcacaaatccagctctacagaaagtatgggaa
gggaagctccaacctaaggaggttaattatacacatgaaaacacagacaa
taaataatctcacacgagaaaaaaaaagagagagaaacacacacacacac
acacacaaaacacacacacatacacacacacacacacacacacacacaca
cacacacacatgcattctctaccaaccaccaccagcacccacccaccacc
accaccaccaagacattaaattagccaatcgttgggtcattaaaagtctt
accaatattattagagtcaaaaccccaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_50530791_50531933
seq2: B6Ng01-211M12.b_50_1171 (reverse)

seq1  GTTCCCTCTCCCTACTGTCAGACATTTCATCTAAGGTCCTTCCCTTTGAG  50
      ||||||||||| ||| |||||||||||||||| |||||  | |  |||||
seq2  GTTCCCTCTCCGTAC-GTCAGACATTTCATCT-AGGTC--TGC--TTGAG  44

seq1  TCCCGATATTCTTTCACCTCCCAGGTCTCTGGTGCATTCTGCAGGGTCCT  100
      | ||||||||| ||||||| |||||||||| ||||| |||||||||| ||
seq2  T-CCGATATTC-TTCACCT-CCAGGTCTCT-GTGCA-TCTGCAGGGT-CT  88

seq1  CCCAACCTCCTACTTCCCAAGTTTGCTCGTTGATTTTTAGTTAAAATGGT  150
      ||||||   |||||  || |||||||||||||| |||||||  |||||| 
seq2  CCCAAC--TCTACT--CCCAGTTTGCTCGTTGA-TTTTAGT--AAATGG-  130

seq1  TCCAGGGATTTTGAGTCAAG-AAAAGAGAGTGTGTTTCCTCCAGGGAATT  199
      |||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  TCCAGGGA-TTTGAGTCAAGAAAAAGAGAGTGTGTTTCCTCCAGGGAATT  179

seq1  AATGTCTATCTTCCTACTAGTTAAGGACAAGGAAGACTTGCACACTCAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTATCTTCCTACTAGTTAAGGACAAGGAAGACTTGCACACTCAAT  229

seq1  TTACAGTCTCCACAGTACTCCATCTCTCAATTGCCTGTTGTCTTCCTAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTCTCCACAGTACTCCATCTCTCAATTGCCTGTTGTCTTCCTAGC  279

seq1  CATGTAATACTCTCCCCTCCTCTTTGATTATGCAAGTAGAAGCTTTGTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAATACTCTCCCCTCCTCTTTGATTATGCAAGTAGAAGCTTTGTAG  329

seq1  AAAAGAATACCCCTTCAGATACTATTAAAATATTTCAGAAAGAAATACAA  399
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAAGAATACCCCTTCAGATACTATTAAAATA-TTCAGAAAGAAATACAA  378

seq1  TTAGCTAAGCACTTACATTTTATTAGTAATATCAAGCAAAATTAATAAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTAAGCACTTACATTTTATTAGTAATATCAAGCAAAATTAATAAGT  428

seq1  AAATTCAAGTAAAATGGTTATGTGTCAAAGTCTATAGTTTTTGCATTGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAAGTAAAATGGTTATGTGTCAAAGTCTATAGTTTTTGCATTGAC  478

seq1  ATTTCACATAATCTGACTTTGCTTAGAAGAGAAATCACTCGGCTGTTAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACATAATCTGACTTTGCTTAGAAGAGAAATCACTCGGCTGTTAAA  528

seq1  ATTACTTCTAAAAAGCTGTCAAAATTAGAAAACCTGCTGTCAAAAATATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTCTAAAAAGCTGTCAAAATTAGAAAACCTGCTGTCAAAAATATG  578

seq1  ATGAGAAAAGTTTAAAAATGGTAGAGTATGTTGACTCAGACAAGAAATAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAAAGTTTAAAAATGGTAGAGTATGTTGACTCAGACAAGAAATAT  628

seq1  TACCTTCATGAAGGAAAGCTTGAATATATATTATTGTCTTTAAAAGGGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCATGAAGGAAAGCTTGAATATATATTATTGTCTTTAAAAGGGAT  678

seq1  GGTTTTCCCCTGGAAACGGACATCCTTCCTTTGAAATTTACATATCCAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCCCCTGGAAACGGACATCCTTCCTTTGAAATTTACATATCCAAA  728

seq1  TGTGTATTTTCATAGCAACATGAACAAAACAATTTATATTCATACCACAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTTTCATAGCAACATGAACAAAACAATTTATATTCATACCACAA  778

seq1  TGACATTTCTGTACCTGCTAGAAAAATCCAAAATATTAATTATGCTATTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTTCTGTACCTGCTAGAAAAATCCAAAATATTAATTATGCTATTA  828

seq1  TAAATATTATTTCTTCAAATTTAAATGAAATAGAATTTTAACTCTCATCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTATTTCTTCAAATTTAAATGAAATAGAATTTTAACTCTCATCT  878

seq1  TTGTTTTCGTATCTTTTGATTTTGTATATGTATTAAACACATTTTAACTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCGTATCTTTTGATTTTGTATATGTATTAAACACATTTTAACTT  928

seq1  ACAAACTATTGTATATCTGTCTGTTATGCAAAGGCCACTATCAGTTATAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTATTGTATATCTGTCTGTTATGCAAAGGCCACTATCAGTTATAG  978

seq1  GTTGTTATTCTACCCTTTCAAATTATAAGAAAATACTATCTTCCATTCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTATTCTACCCTTTCAAATTATAAGAAAATACTATCTTCCATTCAT  1028

seq1  CAAATGCTCAGTTATAATCCATAGATAGTTTAAATTCCAATATAGTTTAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTCAGTTATAATCCATAGATAGTTTAAATTCCAATATAGTTTAA  1078

seq1  TTTTGAGATTTCAGAACTAACCTACATTTAGTGATTGAGAATTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGATTTCAGAACTAACCTACATTTAGTGATTGAGAATTC  1122


seq1: chr12_50402581_50403336
seq2: B6Ng01-211M12.g_68_823

seq1  GAATTCAGCTTTTACCTCTTTCATTAATACTGGATTTTGTGACTATAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTTTACCTCTTTCATTAATACTGGATTTTGTGACTATAGAA  50

seq1  GGAAGGTGAAAGGGAAAAAAGAAAAGAAGAGGAAGAAGAGAATGATGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTGAAAGGGAAAAAAGAAAAGAAGAGGAAGAAGAGAATGATGAAG  100

seq1  ATGAGGAGAAGAAAGATGGTTTGCTTTCCTGTCACCTGATGTCTTTCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAGAAGAAAGATGGTTTGCTTTCCTGTCACCTGATGTCTTTCAGC  150

seq1  TGCTGTGCCTGGGAAGTCCTGACACCACCATCTTATTGAAAGCACAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGCCTGGGAAGTCCTGACACCACCATCTTATTGAAAGCACAATTT  200

seq1  GCCTTTTCCCAAAACTAAGTACCATAATAAAATAGTGGTACACATGAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTCCCAAAACTAAGTACCATAATAAAATAGTGGTACACATGAATC  250

seq1  ATAATAAAAAAGAATAATAGGAATAGAAGTTTCCAGCTCAAAAACCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAAAAGAATAATAGGAATAGAAGTTTCCAGCTCAAAAACCTGCA  300

seq1  AAATATACTGAACAACATCATAGAAGGAAATAGTCCTAACTAAAAGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATACTGAACAACATCATAGAAGGAAATAGTCCTAACTAAAAGAAGG  350

seq1  ACATGATTGTAAAGGTACACAAAGCATATTGAACACCAAATACCAAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATTGTAAAGGTACACAAAGCATATTGAACACCAAATACCAAATAG  400

seq1  AATCGTTCAGAAGATAAAACCCCCAGGCCACATAATAATCAAAACACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTTCAGAAGATAAAACCCCCAGGCCACATAATAATCAAAACACTAA  450

seq1  ATATACAGACGGGAAAAAAAAAAGAGTATTAAAAGCCTCAAGCCAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAGACGGGAAAAAAAAAAGAGTATTAAAAGCCTCAAGCCAAAAAG  500

seq1  GCCAAGTAACAAATAAAGACACTAAAAGTCAGAAGGACCTGACATGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTAACAAATAAAGACACTAAAAGTCAGAAGGACCTGACATGTCTT  550

seq1  GCAGACTCTAAGAGGTCACAGATGCCACTTATATTATTATAACCAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTCTAAGAGGTCACAGATGCCACTTATATTATTATAACCAACAAA  600

seq1  ACTTTCAATCAACATACAGGCAGAAAACAAGATATTTCATGACAAAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAATCAACATACAGGCAGAAAACAAGATATTTCATGACAAAGTCA  650

seq1  AATTTAAACAATATCTATTCACAAATCCAGCTCTACAGAAAGTATGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAACAATATCTATTCACAAATCCAGCTCTACAGAAAGTATGGGAA  700

seq1  GGGAAGCTCCAACCTAAGGAGGTTAATTATACACATGAAAACACAGACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCTCCAACCTAAGGAGGTTAATTATACACATGAAAACACAGACAA  750

seq1  TAAATA  756
      ||||||
seq2  TAAATA  756


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