BAC Information

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BAC

Clone NameB6Ng01-213O22
Chromosome12 (Build37)
Map Location 118,653,679 - 118,805,187
singlet/doubletdoublet
Overlap geneRapgef5
Upstream geneNcapg2, Rnu7-ps1, Ptprn2, LOC627375, LOC432713, LOC100042461
Downstream geneA930023M06Rik, Cdca7l, Dnahc11, Sp4, LOC100042993
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213O22.bB6Ng01-213O22.g
ACCGA031318GA031319
length1,199255
definitionB6Ng01-213O22.b B6Ng01-213O22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,653,679 - 118,654,862)(118,804,932 - 118,805,187)
sequence
gaattctcagatgctgcaaacaactcgaagttcatggctgtctacagcaa
ttttgttagctcaatggaactcagttggcaaaacttcctgccctggcatc
tcaccagggaggctcaaaaaacagcctaccctgcacagaatgcagtttca
gatctcttggataaataccagggtgagagaaccttggtaaatgagtcttc
cctgtatcaactgtaagtagaccatgtaaatctttgtggctgcttctgct
ggccacacaggaaaccgagtcttgctgaatttccagagaaatccacagga
ctacaatgggagcctttagactctgagtaaaattgattctcagagtggga
tgtacattacgatgcttgccagcacttcaaagagtaatatcagaatctct
gggcaccatatagaagtgttgatttttaaactcctgtggttccagggagt
agccaagactgtggcccattgaaataaagggtccttaatgctttgtcatc
tctagcatgtaggcctgaggttactgatagatctctggatactcatataa
atttaaatgtagtgagatgtatacatgcaaacccattaaagggctacatg
cctaaagtttgcatctaccacttacagttataagcatacatatacatata
cgtctacatataaatacatatatgtgtctcttcaaagtctcagactctat
gttaggcatagaactggacctgcaccaacagaggattcaatgaattttga
catcccccaaaactaaagtaaactactctttggcaatcagtggactaatt
cacttgtcttttcccttcagaacagattctgggcatggatactttctaaa
tagggccttggtgtactctgagccgtgaagcatgggtctgttttttttct
ctattgctcgttttgctgttacagctgttataacttccagagagtaactc
aggacacaggtgtgcaaagacactgggagcgggttctgtaggacatccct
ccccctggaaatactggagtgatggccaaacttgccatggggttcttctt
actctgactttacttcaccaacagttcttgcagaacaaaacattcctaaa
ctgcagaatcttggacttcattcctgaagctccttctgttagaacttggg
acgaacgttaaggttaaatagcagtctaactttggaaaacccccaaggc

agggtcagcttgagatagacaagaacctgtatcaaaagtgaaacaaaacc
gtgggggtggggtgggggaggaaagagaacactgatgaaaagaactaaat
atgtaagaagaaaactgtgtctcaaaatctgtgtcacctataacgagtca
cacatatttaaattttcacatagttcacgtgacaatgcattcggttctta
tatgcataaatctcccttctgaatctctaagtgcttccagagaactctgg
acttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_118653679_118654862
seq2: B6Ng01-213O22.b_45_1243

seq1  GAATTCTCAGATGCTGCAAACAACTCGAAGTTCATGGCTGTCTACAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGATGCTGCAAACAACTCGAAGTTCATGGCTGTCTACAGCAA  50

seq1  TTTTGTTAGCTCAATGGAACTCAGTTGGCAAAACTTCCTGCCCTGGCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTAGCTCAATGGAACTCAGTTGGCAAAACTTCCTGCCCTGGCATC  100

seq1  TCACCAGGGAGGCTCAAAAAACAGCCTACCCTGCACAGAATGCAGTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGGGAGGCTCAAAAAACAGCCTACCCTGCACAGAATGCAGTTTCA  150

seq1  GATCTCTTGGATAAATACCAGGGTGAGAGAACCTTGGTAAATGAGTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTTGGATAAATACCAGGGTGAGAGAACCTTGGTAAATGAGTCTTC  200

seq1  CCTGTATCAACTGTAAGTAGACCATGTAAATCTTTGTGGCTGCTTCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATCAACTGTAAGTAGACCATGTAAATCTTTGTGGCTGCTTCTGCT  250

seq1  GGCCACACAGGAAACCGAGTCTTGCTGAATTTCCAGAGAAATCCACAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACACAGGAAACCGAGTCTTGCTGAATTTCCAGAGAAATCCACAGGA  300

seq1  CTACAATGGGAGCCTTTAGACTCTGAGTAAAATTGATTCTCAGAGTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATGGGAGCCTTTAGACTCTGAGTAAAATTGATTCTCAGAGTGGGA  350

seq1  TGTACATTACGATGCTTGCCAGCACTTCAAAGAGTAATATCAGAATCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATTACGATGCTTGCCAGCACTTCAAAGAGTAATATCAGAATCTCT  400

seq1  GGGCACCATATAGAAGTGTTGATTTTTAAACTCCTGTGGTTCCAGGGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCATATAGAAGTGTTGATTTTTAAACTCCTGTGGTTCCAGGGAGT  450

seq1  AGCCAAGACTGTGGCCCATTGAAATAAAGGGTCCTTAATGCTTTGTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGACTGTGGCCCATTGAAATAAAGGGTCCTTAATGCTTTGTCATC  500

seq1  TCTAGCATGTAGGCCTGAGGTTACTGATAGATCTCTGGATACTCATATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCATGTAGGCCTGAGGTTACTGATAGATCTCTGGATACTCATATAA  550

seq1  ATTTAAATGTAGTGAGATGTATACATGCAAACCCATTAAAGGGCTACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATGTAGTGAGATGTATACATGCAAACCCATTAAAGGGCTACATG  600

seq1  CCTAAAGTTTGCATCTACCACTTACAGTTATAAGCATACATATACATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGTTTGCATCTACCACTTACAGTTATAAGCATACATATACATATA  650

seq1  CGTCTACATATAAATACATATATGTGTCTCTTCAAAGTCTCAGACTCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTACATATAAATACATATATGTGTCTCTTCAAAGTCTCAGACTCTAT  700

seq1  GTTAGGCATAGAACTGGACCTGCACCAACAGAGGATTCAATGAATTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGCATAGAACTGGACCTGCACCAACAGAGGATTCAATGAATTTTGA  750

seq1  CATCCCCCAAAACTAAAGTAAACTACTCTTTGGCAATCAGTGGACTAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCCAAAACTAAAGTAAACTACTCTTTGGCAATCAGTGGACTAATT  800

seq1  CACTTGTCTTTTCCCTTCAGAACAGATTCTGGGCATGGATACTTTCT-AA  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CACTTGTCTTTTCCCTTCAGAACAGATTCTGGGCATGGATACTTTCTAAA  850

seq1  TAGGGCCTTGGTGTACTCTGAGCCGTGAAGCATGGGTCTG-TTTTTTTCT  898
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAGGGCCTTGGTGTACTCTGAGCCGTGAAGCATGGGTCTGTTTTTTTTCT  900

seq1  CTATTGCTCG-TTTGCTGTTACAGCTGTTATAAC-TCCAGAGAGTAACTC  946
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  CTATTGCTCGTTTTGCTGTTACAGCTGTTATAACTTCCAGAGAGTAACTC  950

seq1  AGGACACAGGTGTGCAAAGACACTGGGAGCGGGGTCTGTAGGACATCC--  994
      ||||||||||||||||||||||||||||||||| ||||||||||||||  
seq2  AGGACACAGGTGTGCAAAGACACTGGGAGCGGGTTCTGTAGGACATCCCT  1000

seq1  TCCCCTGGAAATACTGGAGTGATGCCAAAACCTTGCCATGGGTCTC----  1040
       ||||||||||||||||||||||| | ||| |||||||||||  ||    
seq2  CCCCCTGGAAATACTGGAGTGATGGCCAAA-CTTGCCATGGGGTTCTTCT  1049

seq1  TACTCTGACTTTACTTCA-CAACAGT--CTGCAGAACAAAACAATCCCAA  1087
      |||||||||||||||||| |||||||   ||||||||||||| || || |
seq2  TACTCTGACTTTACTTCACCAACAGTTCTTGCAGAACAAAAC-ATTCCTA  1098

seq1  AACTGCAGAATC-TGAGCTTCATCCCAG-AGCTCC-TCTG-TAG-ACTGG  1132
      |||||||||||| ||  |||||| || | |||||| |||| ||| ||| |
seq2  AACTGCAGAATCTTGGACTTCATTCCTGAAGCTCCTTCTGTTAGAACTTG  1148

seq1  GAACAAAACAGTAGAGTAAATAGCAGTTCAGATTTTGGAAAACCCCAAAG  1182
      | || ||     ||  |||||||||| ||  | ||||||||||||| |||
seq2  GGACGAACGTTAAGGTTAAATAGCAG-TCTAACTTTGGAAAACCCCCAAG  1197

seq1  GC  1184
      ||
seq2  GC  1199


seq1: chr12_118804932_118805187
seq2: B6Ng01-213O22.g_74_328 (reverse)

seq1  GAAGTCCAGAGTTCTCTGGAAGCACTTAGAGATTCAGAAGGGAGATTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAAGTCCAGAGTTCTCTGGAAGCACTTAGAGATTCAGAAGGGAGATTTAT  50

seq1  GCATATAAGAACCGAATGCATTGTCACGTGAACTATGTGAAAATTTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATAAGAACCGAATGCATTGTCACGTGAACTATGTGAAAATTTAAAT  100

seq1  ATGTGTGACTCGTTCTAGGTGACACAGATTTTGAGACACAGTTTTCTTCT  150
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATGTGTGACTCGTTATAGGTGACACAGATTTTGAGACACAGTTTTCTTCT  150

seq1  TACATATTTAGTTCTTCTCATCAGTGTTCTCTAGTCCTCCCCCACCCCAC  200
      |||||||||||||||| |||||||||||||||  ||||||||||||||||
seq2  TACATATTTAGTTCTTTTCATCAGTGTTCTCT-TTCCTCCCCCACCCCAC  199

seq1  CCCCACGGTTTTGTTTCACTTTTGATACAGGTTCTTGTCTATCTCAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACGGTTTTGTTTCACTTTTGATACAGGTTCTTGTCTATCTCAAGCT  249

seq1  GACCCT  256
      ||||||
seq2  GACCCT  255


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