BAC Information

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BAC

Clone NameB6Ng01-214B05
Chromosome12 (Build37)
Map Location 114,253,962 - 114,385,979
singlet/doubletdoublet
Overlap genePacs2, Tex22, Mta1, Crip2
Upstream geneTdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6
Downstream geneCrip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214B05.bB6Ng01-214B05.g
ACCGA031424GA031425
length1,1011,084
definitionB6Ng01-214B05.b B6Ng01-214B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,384,890 - 114,385,979)(114,253,962 - 114,255,044)
sequence
gaattccagtctctccaaaccagcagctgatggcctggagcccacccccg
cagtcagtctggcctgggaaaaagggctgcccacacctggcaccctgggc
tccggccagcccgaactgtacccgctcaatagccagagcactagcacatg
gtgatccttttgataccctgcccacaggcttcagccagcagccagtgagc
agggccaaccatgtcagatctagagataaatgggatctgcttgaggaaga
ctcgggcagaagggttcccagggccgatgcaggagaagcaaggctaggca
ggagggaggatgctagggtgttggccagatgatcaaagattaaggtatgt
ggggagaaggagccataggctgggcaccccataaagaagtccaactgagt
atactggtaaacagagaggagatcagaaggcctggttggagagtgcagca
aggctagataggtgggtggtggtcgcgtggaagggcgcgtcaggggaact
cctgcaactaaactgtgtagagcagcctgggctgcgtctccttgtgaggt
tctggactcggcagaacttggaatggagtgagatggtctgttggcatcta
gagtcatctctgagtctagctgtttatttgggagatagaaaagctcaggg
cactctcccataagggtggatgccagacaaaggcttcttattctcttcct
ccatctttgggtgcatcggaagctggtgccactgacgcgacctggcaacg
cagcggacaccgccctggcaacaagacccagacaaacagtcgcagcaccg
ccgcgttcccacgacaactccttggaaacaaacaccaagcaacgttcatc
tttctcggcaggaaaagccagatcctgcctctgccccttccgatgtacag
caaagctggccgtcagggcgaggtttggatctgccctttggaagacctct
gctcctcgtggtcccacccaggggaatcccctttcttgtcttctatgttc
tcgccctatggatcgaatgagagcccgccccttcgatttcctcagtctga
gctgtagaagtcttctgctactaggccgtacaattaccggtcctctactc
c
gaattcctttagcagtctctgagttcccttaatgagagccaagggtcccc
atgccccccaccccatacaccagtcagcctttctctttctccctccctct
tctgttcccccttccttctttttcagaaacactgaggctgtttgaactcc
tatgctcttgtgatccacatccccaacacacacttgaacttcttttagag
ttagaaccgcagatacaggtagcacactcacctaagactggagcctaaac
ctagtaaggaaagggagagaggccatttcctttaaaggtggacgattttt
tttttcttttgagacagggttttgctttgtagtcatgaatggccttgaac
ttgtttttgtaacccagggtggccttgagctctcagtcctcctgcctctg
cctcctgtgtacagggattataggcatgcgcaccgtgcctgctgtggtct
gtgttcttgaagatcctttttccacaggagaaggtaggggtcagggaagg
ctggtggaggacaggcttacacagagaggaagatgtgaaaggggtgagca
gcagcaggtgttggggtgctctgggtgttgggctggacagagactttctc
tggaggggtgaggaccttggtcaggtggagcagatgttctgtgtgttaaa
gtatagagtgtcaggacagtgttgcatgttttctgacctgtgtcctcctc
tgctctgctgccagaggtgctcaccctcaggacttagcacacaccttctg
cactcagtcagcactcagcactcaccctcagcactcagtcagcactcacc
ttcagcactcatcctcagcactcagtcaacactcagcactctctctcagc
actcgcactcagcattcagcactcagtcagactcaccctcagcactcagc
actcactctcagcactctctctcagcactcgcactcagcattcagcactc
agtcagactcaccctcagcactcagcactcaccctcagcactctctctca
gcactcgcactcagcattcagcactcagcactcacccctcagcacacacc
cctctggccactgctgtgcagtgctgtgctttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_114384890_114385979
seq2: B6Ng01-214B05.b_51_1151 (reverse)

seq1  GGAGTAGAGGGGACGGTGAATTGTCAGCCCTAGTAGCAGAAAGACTTCCA  50
      ||||||||  |||| |  ||||||  | ||||||||||| |||||||| |
seq2  GGAGTAGA--GGACCGGTAATTGTACGGCCTAGTAGCAG-AAGACTTCTA  47

seq1  CCAGCTCAGCCTGAAGGAATCGAAGGGGCGGGCTCTC-CTCGATCC--TG  97
       |||||||| |||| | ||||||||||||||||||||  |||||||   |
seq2  -CAGCTCAGACTGAGGAAATCGAAGGGGCGGGCTCTCATTCGATCCATAG  96

seq1  GGCGGAACCTTTGAGGACAAG-AAGGGGATTCCCCTGGTTGGG-CCACGA  145
      ||||  | | | || |||||| |||||||||||||||| |||| ||||||
seq2  GGCGAGAACATAGAAGACAAGAAAGGGGATTCCCCTGGGTGGGACCACGA  146

seq1  GG-GCAGGGGTCTTCC-CAGGGCAGATCC-ATCCCCGCCCTG-CGGCCAG  191
      || |||| ||||||||  ||||||||||| | || ||||||| |||||||
seq2  GGAGCAGAGGTCTTCCAAAGGGCAGATCCAAACCTCGCCCTGACGGCCAG  196

seq1  CTTTGCTGTACATCGG-AGGGGCAG-GGCAGGATCTGGCTTTTCCTGCCG  239
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  CTTTGCTGTACATCGGAAGGGGCAGAGGCAGGATCTGGCTTTTCCTGCCG  246

seq1  AGAAAGATG-ACGTTGCTTGGTGTTTGTTTCCAAGGAGTTGTCGTGGAAA  288
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  AGAAAGATGAACGTTGCTTGGTGTTTGTTTCCAAGGAGTTGTCGTGGGAA  296

seq1  CGCGGCGGTGCTGCGACTGTTTGTCTGGGTCTTGTTGCCA-GGCGGTGTC  337
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CGCGGCGGTGCTGCGACTGTTTGTCTGGGTCTTGTTGCCAGGGCGGTGTC  346

seq1  CGCTGCGTTGCCAGGTCGCGTCAGTGGCACCAGCTTCCGATGCACCC-AA  386
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CGCTGCGTTGCCAGGTCGCGTCAGTGGCACCAGCTTCCGATGCACCCAAA  396

seq1  GATGGAGG-AGAGAATAAGAAGCCTTTGTCTGGCATCCACCCTTATGGGA  435
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGGAAGAGAATAAGAAGCCTTTGTCTGGCATCCACCCTTATGGGA  446

seq1  GAGTGCCCTGAGCTTTTCTATCTCCCAAATAAACAGCTAGACTCAGAGAT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCCTGAGCTTTTCTATCTCCCAAATAAACAGCTAGACTCAGAGAT  496

seq1  GACTCTAGATGCCAACAGACCATCTCACTCCATTCCAAGTTCTGCCGAGT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTAGATGCCAACAGACCATCTCACTCCATTCCAAGTTCTGCCGAGT  546

seq1  CCAGAACCTCACAAGGAGACGCAGCCCAGGCTGCTCTACACAGTTTAGTT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACCTCACAAGGAGACGCAGCCCAGGCTGCTCTACACAGTTTAGTT  596

seq1  GCAGGAGTTCCCCTGACGCGCCCTTCCACGCGACCACCACCCACCTATCT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGTTCCCCTGACGCGCCCTTCCACGCGACCACCACCCACCTATCT  646

seq1  AGCCTTGCTGCACTCTCCAACCAGGCCTTCTGATCTCCTCTCTGTTTACC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGCTGCACTCTCCAACCAGGCCTTCTGATCTCCTCTCTGTTTACC  696

seq1  AGTATACTCAGTTGGACTTCTTTATGGGGTGCCCAGCCTATGGCTCCTTC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACTCAGTTGGACTTCTTTATGGGGTGCCCAGCCTATGGCTCCTTC  746

seq1  TCCCCACATACCTTAATCTTTGATCATCTGGCCAACACCCTAGCATCCTC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACATACCTTAATCTTTGATCATCTGGCCAACACCCTAGCATCCTC  796

seq1  CCTCCTGCCTAGCCTTGCTTCTCCTGCATCGGCCCTGGGAACCCTTCTGC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGCCTAGCCTTGCTTCTCCTGCATCGGCCCTGGGAACCCTTCTGC  846

seq1  CCGAGTCTTCCTCAAGCAGATCCCATTTATCTCTAGATCTGACATGGTTG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTCTTCCTCAAGCAGATCCCATTTATCTCTAGATCTGACATGGTTG  896

seq1  GCCCTGCTCACTGGCTGCTGGCTGAAGCCTGTGGGCAGGGTATCAAAAGG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCTCACTGGCTGCTGGCTGAAGCCTGTGGGCAGGGTATCAAAAGG  946

seq1  ATCACCATGTGCTAGTGCTCTGGCTATTGAGCGGGTACAGTTCGGGCTGG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCATGTGCTAGTGCTCTGGCTATTGAGCGGGTACAGTTCGGGCTGG  996

seq1  CCGGAGCCCAGGGTGCCAGGTGTGGGCAGCCCTTTTTCCCAGGCCAGACT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGCCCAGGGTGCCAGGTGTGGGCAGCCCTTTTTCCCAGGCCAGACT  1046

seq1  GACTGCGGGGGTGGGCTCCAGGCCATCAGCTGCTGGTTTGGAGAGACTGG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCGGGGGTGGGCTCCAGGCCATCAGCTGCTGGTTTGGAGAGACTGG  1096

seq1  AATTC  1090
      |||||
seq2  AATTC  1101

seq1: chr12_114253962_114255044
seq2: B6Ng01-214B05.g_64_1147

seq1  GAATTCCTTTAGCAGTCTCTGAGTTCCCTTAATGAGAGCCAAGGGTCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTAGCAGTCTCTGAGTTCCCTTAATGAGAGCCAAGGGTCCCC  50

seq1  ATGCCCCCCACCCCATACACCAGTCAGCCTTTCTCTTTCTCCCTCCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCCCACCCCATACACCAGTCAGCCTTTCTCTTTCTCCCTCCCTCT  100

seq1  TCTGTTCCCCCTTCCTTCTTTTTCAGAAACACTGAGGCTGTTTGAACTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCCCCTTCCTTCTTTTTCAGAAACACTGAGGCTGTTTGAACTCC  150

seq1  TATGCTCTTGTGATCCACATCCCCAACACACACTTGAACTTCTTTTAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCTTGTGATCCACATCCCCAACACACACTTGAACTTCTTTTAGAG  200

seq1  TTAGAACCGCAGATACAGGTAGCACACTCACCTAAGACTGGAGCCTAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACCGCAGATACAGGTAGCACACTCACCTAAGACTGGAGCCTAAAC  250

seq1  CTAGTAAGGAAAGGGAGAGAGGCCATTTCCTTTAAAGGTGGACGATTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAGGAAAGGGAGAGAGGCCATTTCCTTTAAAGGTGGACGATTTTT  300

seq1  TTTTTCTTTTGAGACAGGGTTTTGCTTTGTAGTCATGAATGGCCTTGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTGAGACAGGGTTTTGCTTTGTAGTCATGAATGGCCTTGAAC  350

seq1  TTGTTTTTGTAACCCAGGGTGGCCTTGAGCTCTCAGTCCTCCTGCCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGTAACCCAGGGTGGCCTTGAGCTCTCAGTCCTCCTGCCTCTG  400

seq1  CCTCCTGTGTACAGGGATTATAGGCATGCGCACCGTGCCTGCTGTGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGTGTACAGGGATTATAGGCATGCGCACCGTGCCTGCTGTGGTCT  450

seq1  GTGTTCTTGAAGATCCTTTTTCCACAGGAGAAGGTAGGGGTCAGGGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTGAAGATCCTTTTTCCACAGGAGAAGGTAGGGGTCAGGGAAGG  500

seq1  CTGGTGGAGGACAGGCTTACACAGAGAGGAAGATGTGAAAGGGGTGAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGAGGACAGGCTTACACAGAGAGGAAGATGTGAAAGGGGTGAGCA  550

seq1  GCAGCAGGTGTTGGGGTGCTCTGGGTGTTGGGCTGGACAGAGACTTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGGTGTTGGGGTGCTCTGGGTGTTGGGCTGGACAGAGACTTTCTC  600

seq1  TGGAGGGGTGAGGACCTTGGTCAGGTGGAGCAGATGTTCTGTGTGTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGGTGAGGACCTTGGTCAGGTGGAGCAGATGTTCTGTGTGTTAAA  650

seq1  GTATAGAGTGTCAGGACAGTGTTGCATGTTTTCTGACCTGTGTCCTCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGAGTGTCAGGACAGTGTTGCATGTTTTCTGACCTGTGTCCTCCTC  700

seq1  TGCTCTGCTGCCAGAGGTGCTCACCCTCAGGACTTAGCACACACCTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGCTGCCAGAGGTGCTCACCCTCAGGACTTAGCACACACCTTCTG  750

seq1  CACTCAGTCAGCACTCAGCACTCACCCTCAGCACTCAGTCAGCACTCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGTCAGCACTCAGCACTCACCCTCAGCACTCAGTCAGCACTCACC  800

seq1  TTCAGCACTCATCCTCAGCACTCAGTCAACACTCAGCACTCTCTCTCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCACTCATCCTCAGCACTCAGTCAACACTCAGCACTCTCTCTCAGC  850

seq1  ACTCGCACTCAGCATTCAGCACTCAGTCAGACTCACCCTCAGCACTCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGCACTCAGCATTCAGCACTCAGTCAGACTCACCCTCAGCACTCAGC  900

seq1  ACTCACCCTCAGCACTCTCTCTCAGCACTCGCACTCAGCATTCAGCACTC  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTCTCAGCACTCTCTCTCAGCACTCGCACTCAGCATTCAGCACTC  950

seq1  AGTCAGACTCACCCTCAGCACTCAGCACTCACCCTCAGCACTCTCTCTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGACTCACCCTCAGCACTCAGCACTCACCCTCAGCACTCTCTCTCA  1000

seq1  GCACTCGCACTCAGCATTCAGCACTCAGCACTCA-CCCTCAGCACACA-C  1048
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  GCACTCGCACTCAGCATTCAGCACTCAGCACTCACCCCTCAGCACACACC  1050

seq1  CCTCTGGCCACTTGCTGTGCAGTGCTGTGCTTTGG  1083
      ||||||||||| |||||||||||||||||||||||
seq2  CCTCTGGCCAC-TGCTGTGCAGTGCTGTGCTTTGG  1084