BAC Information

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BAC

Clone NameB6Ng01-216K21
Chromosome12 (Build37)
Map Location 46,269,924 - 46,425,514
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025, Stxbp6
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216K21.bB6Ng01-216K21.g
ACCGA033307GA033308
length1,1701,057
definitionB6Ng01-216K21.b B6Ng01-216K21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,269,924 - 46,271,096)(46,424,469 - 46,425,514)
sequence
gaattcttttttaaaaatggtttatttattttatatgagtactgtactgt
agctgtcatcagacatatcagaagagggcatcgagtccattacagatggt
tgtgagccaccatgtggttgctgggaatttaactcaggacctttggaaga
gcagtcagtgctcttaaccgctgatccatctcttcagcccttagttgaat
tcctaatcacgactaattgacaaagcatgtaattacaaaattttaggatc
atgttaatgtggctcagagttttcttttctaaatttgagaatttcaagtt
cttcaaacactgggcatgagagggaagtttatctatgggagttctaatag
tatagacaaatttatgaattatttgactcattcttctatgaagatattta
ctaatgtatcttgatgggcttcagattttaaagaaagattctgagatgac
ttaaatcattctcttgatagaaaagaaattttgttagccttttcttcatt
gtttgttttctattcaatactattggtaaaattgtcataattataaaaaa
aacaatcagagccttaaaaagaaaaactcaggaccttaccaaccacaatg
tggaagtttttgggtattttgcataggacaatctaggaggttcccctgct
ttccctatacagtgctactcagtgaggtcaaagcatctgggagcagaact
gaacaaagtgagaacttcctatggacatgcactttgcaagcaaatacaaa
tatctttttaagcatgttttgcatgtcccgtgaatggctcaagttagaag
aaagattctatcccctcacatcttcctgtgatgaagcctggatatctcta
tcagtgtcactcttggaaataaatcatgatggttaattgtcactgactag
tccccacctctgcctctttcccatttggttcctagtgttctgtaaattgc
tcaagtatccaataattactctagagaaaaggtatggtgcagaataacag
agagtagaaaacaagtcctgagacttcatcactaagagaattcatgaatg
agttggttatatgcctggaaagggacagccctgatagaagaagaacgtta
ttctcatctaaaggtttttgggactatttgacatggcatcaccttagcat
atatacttgattgcctacta

gaattctcttcagctgtaaagctttcacctacctccctagaaccatatct
gtctttgtgcagccataatgatgatggactaaacctccgaaactgtaagc
aagccccaattacctgttttataagagttgctatgaccatgatgtctctt
caacaatagtacaataactaagacacgagctattaattatttttaacaag
tggagctgttggaagacaaatgttagaaaatgtggcataaactagaatag
aaaaataaagaaatggaaaattaaaaaaactgaaatataaataagataag
tcacagaaaaaaattaaaggattatatgatgggaagatgccaagaatact
ttctagtactaataggcctgagttcccaggctgaaatcaccatcagctca
ccacaacagatggaaaaaggcctacaccaaaacatagcattgtagaattt
tagaaacatcaagaacactgagaatatggatgtatatgagccacctgaac
tttaaagcggataatatgtcatacattgtttaaaggacattaagggttca
ggcacagcagttgtctagtgtgtctaacacattacttaccacaagaaaag
aaaggaaggaagcaatgaaggaagaaataaggaagaattagtccatggtt
catagaacctatacctttgggcagaaaattatactctgactcaaatagct
gagaaacactcaaatgttcaatattcttagccgttatggaaatgtacttt
gagtttccattttacacaggtcagaatggctctaagggaagtaacacaag
tgacaactcaccctgttaaggatgcatagcaaaaaacatactccattgct
agtagaggtgtaaacttttacaacaactatgggaaatcaacatagtagtt
tctcagaaaactgggaaaacattcttacctcaagacccagttattaccac
tcttggggaatatgctgaatgactctctatcctatcaacaaaggctcact
tatgttcatagtattctatattcataatgggccaggaaactgggaaaaca
ccctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_46269924_46271096
seq2: B6Ng01-216K21.b_46_1215

seq1  GAATTCTTTTTTAAAAATGGTTTATTTATTTTATATGAGTACTGTACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTAAAAATGGTTTATTTATTTTATATGAGTACTGTACTGT  50

seq1  AGCTGTCATCAGACATATCAGAAGAGGGCATCGAGTCCATTACAGATGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCATCAGACATATCAGAAGAGGGCATCGAGTCCATTACAGATGGT  100

seq1  TGTGAGCCACCATGTGGTTGCTGGGAATTTAACTCAGGACCTTTGGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCACCATGTGGTTGCTGGGAATTTAACTCAGGACCTTTGGAAGA  150

seq1  GCAGTCAGTGCTCTTAACCGCTGATCCATCTCTTCAGCCCTTAGTTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAGTGCTCTTAACCGCTGATCCATCTCTTCAGCCCTTAGTTGAAT  200

seq1  TCCTAATCACGACTAATTGACAAAGCATGTAATTACAAAATTTTAGGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATCACGACTAATTGACAAAGCATGTAATTACAAAATTTTAGGATC  250

seq1  ATGTTAATGTGGCTCAGAGTTTTCTTTTCTAAATTTGAGAATTTCAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAATGTGGCTCAGAGTTTTCTTTTCTAAATTTGAGAATTTCAAGTT  300

seq1  CTTCAAACACTGGGCATGAGAGGGAAGTTTATCTATGGGAGTTCTAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAACACTGGGCATGAGAGGGAAGTTTATCTATGGGAGTTCTAATAG  350

seq1  TATAGACAAATTTATGAATTATTTGACTCATTCTTCTATGAAGATATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACAAATTTATGAATTATTTGACTCATTCTTCTATGAAGATATTTA  400

seq1  CTAATGTATCTTGATGGGCTTCAGATTTTAAAGAAAGATTCTGAGATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTATCTTGATGGGCTTCAGATTTTAAAGAAAGATTCTGAGATGAC  450

seq1  TTAAATCATTCTCTTGATAGAAAAGAAATTTTGTTAGCCTTTTCTTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCATTCTCTTGATAGAAAAGAAATTTTGTTAGCCTTTTCTTCATT  500

seq1  GTTTGTTTTCTATTCAATACTATTGGTAAAATTGTCATAATTATAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTCTATTCAATACTATTGGTAAAATTGTCATAATTATAAAAAA  550

seq1  AACAATCAGAGCCTTAAAAAGAAAAACTCAGGACCTTACCAACCACAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCAGAGCCTTAAAAAGAAAAACTCAGGACCTTACCAACCACAATG  600

seq1  TGGAAGTTTTTGGGTATTTTGCATAGGACAATCTAGGAGGTTCCCCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTTTTTGGGTATTTTGCATAGGACAATCTAGGAGGTTCCCCTGCT  650

seq1  TTCCCTATACAGTGCTACTCAGTGAGGTCAAAGCATCTGGGAGCAGAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTATACAGTGCTACTCAGTGAGGTCAAAGCATCTGGGAGCAGAACT  700

seq1  GAACAAAGTGAGAACTTCCTATGGACATGCACTTTGCAAGCAAATACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAGTGAGAACTTCCTATGGACATGCACTTTGCAAGCAAATACAAA  750

seq1  TATCTTTTTAAGCATGTTTTGCATGTCCCGTGAATGGCTCAAGTTAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTTAAGCATGTTTTGCATGTCCCGTGAATGGCTCAAGTTAGAAG  800

seq1  AAAGATTCTATCCCCTCACATCTTCCTGTGATGAAGCCTGGATATCTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCTATCCCCTCACATCTTCCTGTGATGAAGCCTGGATATCTCTA  850

seq1  TCAGTGTCACTCTTGGAAATAAATCATGATGGTTAATTGTCACTGACTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCACTCTTGGAAATAAATCATGATGGTTAATTGTCACTGACTAG  900

seq1  TCCCCACCTCTGCCTCTTTCCCATTTGGTTCCTAGTGTTCTGTAAATTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACCTCTGCCTCTTTCCCATTTGGTTCCTAGTGTTCTGTAAATTGC  950

seq1  TCAAGTATCCAATAATTACTCTTAGAGAAAAGGTATGGGTGCAGAAATAA  1000
      ||||||||||||||||||||| |||||||||||||| ||||||| |||||
seq2  TCAAGTATCCAATAATTACTC-TAGAGAAAAGGTAT-GGTGCAG-AATAA  997

seq1  CAAGAGAAGTAG-AAACAAGTCCTGAGAACTTCATCACTAAGAG-ATTCA  1048
      | |||| ||||| |||||||||||||| |||||||||||||||| |||||
seq2  C-AGAG-AGTAGAAAACAAGTCCTGAG-ACTTCATCACTAAGAGAATTCA  1044

seq1  TGAATGAGGTTGGTTATATGCCTGGAAAGGGACAGCCCTG-TAGAAG-AG  1096
      ||||||| |||||||||||||||||||||||||||||||| |||||| ||
seq2  TGAATGA-GTTGGTTATATGCCTGGAAAGGGACAGCCCTGATAGAAGAAG  1093

seq1  ACGGTAATTCT--ACTAAAGGTTTTTGGGACTATTTGACATGGCATTCCA  1144
      |  || |||||   ||||||||||||||||||||||||||||||| ||  
seq2  AACGTTATTCTCATCTAAAGGTTTTTGGGACTATTTGACATGGCA-TCAC  1142

seq1  CTTAGCATATATACACTGAATGCCTACTA  1173
      ||||||||||||||  ||| |||||||||
seq2  CTTAGCATATATAC-TTGATTGCCTACTA  1170


seq1: chr12_46424469_46425514
seq2: B6Ng01-216K21.g_69_1125 (reverse)

seq1  TCTAGGTTGTTT--CCAGTTT-CTGG-CCATTATGAATATAG-ATACTAT  45
      |||||| |||||  ||||||| |||| ||||||||||||||| |||||||
seq2  TCTAGGGTGTTTTCCCAGTTTCCTGGCCCATTATGAATATAGAATACTAT  50

seq1  GAACATAGTTGAGCCTTTG-TGATAGGATAGAGAGTCATTCAAGCATATT  94
      |||||||  |||||||||| ||||||||||||||||||||| ||||||||
seq2  GAACATAAGTGAGCCTTTGTTGATAGGATAGAGAGTCATTC-AGCATATT  99

seq1  -CCCAAGAGTGGT-ATAACTGGGTCTTGAGGT-AGAATG-TTTCCCAGTT  140
       |||||||||||| |||||||||||||||||| |||||| ||||||||||
seq2  CCCCAAGAGTGGTAATAACTGGGTCTTGAGGTAAGAATGTTTTCCCAGTT  149

seq1  TTCTGAGAAACTACTATGTTGATTT-CCATAGTTGTTGTAAAAGTTTACA  189
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTCTGAGAAACTACTATGTTGATTTCCCATAGTTGTTGTAAAAGTTTACA  199

seq1  CCTCTACTAGCAATGGAGTATG-TTTTTGCTATGCATCCTTAACAGGGTG  238
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCTCTACTAGCAATGGAGTATGTTTTTTGCTATGCATCCTTAACAGGGTG  249

seq1  AGTTGTCACTTGTGTTACTTCCCTTAGAGCCATTCTGACCTGTGTAAAAT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCACTTGTGTTACTTCCCTTAGAGCCATTCTGACCTGTGTAAAAT  299

seq1  GGAAACTCAAAGTACATTTCCATAACGGCTAAGAATATTGAACATTTGAG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTCAAAGTACATTTCCATAACGGCTAAGAATATTGAACATTTGAG  349

seq1  TGTTTCTCAGCTATTTGAGTCAGAGTATAATTTTCTGCCCAAAGGTATAG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCAGCTATTTGAGTCAGAGTATAATTTTCTGCCCAAAGGTATAG  399

seq1  GTTCTATGAACCATGGACTAATTCTTCCTTATTTCTTCCTTCATTGCTTC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATGAACCATGGACTAATTCTTCCTTATTTCTTCCTTCATTGCTTC  449

seq1  CTTCCTTTCTTTTCTTGTGGTAAGTAATGTGTTAGACACACTAGACAACT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTCTTTTCTTGTGGTAAGTAATGTGTTAGACACACTAGACAACT  499

seq1  GCTGTGCCTGAACCCTTAATGTCCTTTAAACAATGTATGACATATTATCC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCCTGAACCCTTAATGTCCTTTAAACAATGTATGACATATTATCC  549

seq1  GCTTTAAAGTTCAGGTGGCTCATATACATCCATATTCTCAGTGTTCTTGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAAGTTCAGGTGGCTCATATACATCCATATTCTCAGTGTTCTTGA  599

seq1  TGTTTCTAAAATTCTACAATGCTATGTTTTGGTGTAGGCCTTTTTCCATC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTAAAATTCTACAATGCTATGTTTTGGTGTAGGCCTTTTTCCATC  649

seq1  TGTTGTGGTGAGCTGATGGTGATTTCAGCCTGGGAACTCAGGCCTATTAG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGGTGAGCTGATGGTGATTTCAGCCTGGGAACTCAGGCCTATTAG  699

seq1  TACTAGAAAGTATTCTTGGCATCTTCCCATCATATAATCCTTTAATTTTT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGAAAGTATTCTTGGCATCTTCCCATCATATAATCCTTTAATTTTT  749

seq1  TTCTGTGACTTATCTTATTTATATTTCAGTTTTTTTAATTTTCCATTTCT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGACTTATCTTATTTATATTTCAGTTTTTTTAATTTTCCATTTCT  799

seq1  TTATTTTTCTATTCTAGTTTATGCCACATTTTCTAACATTTGTCTTCCAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCTATTCTAGTTTATGCCACATTTTCTAACATTTGTCTTCCAA  849

seq1  CAGCTCCACTTGTTAAAAATAATTAATAGCTCGTGTCTTAGTTATTGTAC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCACTTGTTAAAAATAATTAATAGCTCGTGTCTTAGTTATTGTAC  899

seq1  TATTGTTGAAGAGACATCATGGTCATAGCAACTCTTATAAAACAGGTAAT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTGAAGAGACATCATGGTCATAGCAACTCTTATAAAACAGGTAAT  949

seq1  TGGGGCTTGCTTACAGTTTCGGAGGTTTAGTCCATCATCATTATGGCTGC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTTGCTTACAGTTTCGGAGGTTTAGTCCATCATCATTATGGCTGC  999

seq1  ACAAAGACAGATATGGTTCTAGGGAGGTAGGTGAAAGCTTTACAGCTGAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACAGATATGGTTCTAGGGAGGTAGGTGAAAGCTTTACAGCTGAA  1049

seq1  GAGAATTC  1046
      ||||||||
seq2  GAGAATTC  1057


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