BAC Information

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BAC

Clone NameB6Ng01-217N10
Chromosome12 (Build37)
Map Location 19,884,525 - 20,033,188
singlet/doubletdoublet
Overlap geneEG668600
Upstream geneLOC668568, LOC668570, EG668413, LOC671401, EG546524, EG668584, EG544848, EG627871, LOC100042698, LOC629055, EG668588, LOC100042706, EG668594
Downstream geneLOC100042727, LOC673301, EG668605, LOC668614, LOC100042751, LOC100043371, EG668455, LOC100042755, LOC100043377, LOC625810, 1700030C10Rik, 3110053B16Rik, LOC668698
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217N10.bB6Ng01-217N10.g
ACCGA034130GA034131
length717974
definitionB6Ng01-217N10.b B6Ng01-217N10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,032,474 - 20,033,188)(19,884,525 - 19,885,485)
sequence
gaattcagtctctttccattaggagagccctgccttctctagggctgctc
caggcttgcattgaaggctaagaccaggactctcaaccttcacctcccaa
aggaattgcctcaggagaggtgtaggaatcgaggtgccacactccagtac
tgtgatgctgtggcctggggccaggcccaaggagctgcattccaggagac
ccaacctcaggcacattgctgcctctctggctaatgaagactgacaagcc
tacaggccaggagatggcttgaagaacacccagaaccctccctagatctg
agcaagctcttcagactgactggtcccatgaagaacaagttttttgtttt
gctttgttttttcttttttgctccttcctctgacttcacagccaatgagc
tcttttttccaaggaagcagcatcctaatttggctaatggaagtagtaag
ggagtttatttgtgagatctgggtgactcccagatctccagaggggccca
gactaggtcaggcactatgcagccagaaccacgtgtcaactgtgtacagt
ggtgtttgtcctgtcaggatcctgctgccagctgtggcttctgaacattc
tctgatgatagaggggggtagtttagatctttctgctgatgtcttccccc
ccagggaggattcttgcctcctttttcacaataaaatcccagttcaggac
cagggtcaggacctagg
gaattcaggagagcagaaccaggttcttccagtccacagacaccccctcc
cccaccaggcaactctgaacacagccaggactcagggcagcctacaacag
tactttcaaactttcagtgcacacactgctcctgagagtgctattaaaat
gcaccctctatttccacagctctgccatggaacctgaggctctgcaagtt
gcacaccttactgactggtggtgtcaggtgaagcattttggagttgcaag
ggcctaaaactgtgctcatcaacaggacttcctgcaagtatggagaacaa
agtcctgaatctacatcatgcaacagagtggctaccaacccatgtggcca
ccaagcatctgagaccaagtaatgttagcaaagagctaactttattcttg
ggctacaatgctgaccaaaagccaaaagcgcagtcccccaccatgaaagg
cctgtgtaaattcttggcctaaggagccttctgcagtctggatggatagg
aaaattccaccaaaggcctagttgatcaccagcccaagagcggataaata
tttccctaaggtaaggacacagatatggaaagacttgattaaaccaccct
ggagcctcttacaccaggcttccattcaaggctctttcatccacatccct
gatcacatgtaagcagtgccagtcttcctgttctctacatcatcaccata
gatgctctgatcacatgtaagtggtccagtcttcctgttctctacatcat
catcatagatgctctgatcacatgtaagtggtccagtcttcctgttctct
acatcatcaccatagatgctctgatcacatgtaagcagtccagtcttcct
gtcctctacatcatcaccatagatgctctgatcacatgtaagtggtccca
gtccttcctggttctctataatcaatcattcattagatgcttctgatcac
caatgtaagccggtcccaaggctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_20032474_20033188
seq2: B6Ng01-217N10.b_52_768 (reverse)

seq1  CCTAGGTCCTGACCCTGGTCCTGAACTGGGATTTTATTGTG-AAAAGGAG  49
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTAGGTCCTGACCCTGGTCCTGAACTGGGATTTTATTGTGAAAAAGGAG  50

seq1  GCAAGAATCCTCCCTGGGGTGGAAGACATCAGCAGAAAGATCT-AACTAC  98
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  GCAAGAATCCTCCCTGGGGGGGAAGACATCAGCAGAAAGATCTAAACTAC  100

seq1  CCCCCTCTATCATCAGAGAATGTTCAGAAGCCACAGCTGGCAGCAGGATC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCTATCATCAGAGAATGTTCAGAAGCCACAGCTGGCAGCAGGATC  150

seq1  CTGACAGGACAAACACCACTGTACACAGTTGACACGTGGTTCTGGCTGCA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGGACAAACACCACTGTACACAGTTGACACGTGGTTCTGGCTGCA  200

seq1  TAGTGCCTGACCTAGTCTGGGCCCCTCTGGAGATCTGGGAGTCACCCAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCTGACCTAGTCTGGGCCCCTCTGGAGATCTGGGAGTCACCCAGA  250

seq1  TCTCACAAATAAACTCCCTTACTACTTCCATTAGCCAAATTAGGATGCTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAAATAAACTCCCTTACTACTTCCATTAGCCAAATTAGGATGCTG  300

seq1  CTTCCTTGGAAAAAAGAGCTCATTGGCTGTGAAGTCAGAGGAAGGAGCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGGAAAAAAGAGCTCATTGGCTGTGAAGTCAGAGGAAGGAGCAA  350

seq1  AAAAGAAAAAACAAAGCAAAACAAAAAACTTGTTCTTCATGGGACCAGTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAACAAAGCAAAACAAAAAACTTGTTCTTCATGGGACCAGTC  400

seq1  AGTCTGAAGAGCTTGCTCAGATCTAGGGAGGGTTCTGGGTGTTCTTCAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAAGAGCTTGCTCAGATCTAGGGAGGGTTCTGGGTGTTCTTCAAG  450

seq1  CCATCTCCTGGCCTGTAGGCTTGTCAGTCTTCATTAGCCAGAGAGGCAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCCTGGCCTGTAGGCTTGTCAGTCTTCATTAGCCAGAGAGGCAGC  500

seq1  AATGTGCCTGAGGTTGGGTCTCCTGGAATGCAGCTCCTTGGGCCTGGCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCCTGAGGTTGGGTCTCCTGGAATGCAGCTCCTTGGGCCTGGCCC  550

seq1  CAGGCCACAGCATCACAGTACTGGAGTGTGGCACCTCGATTCCTACACCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCACAGCATCACAGTACTGGAGTGTGGCACCTCGATTCCTACACCT  600

seq1  CTCCTGAGGCAATTCCTTTGGGAGGTGAAGGTTGAGAGTCCTGGTCTTAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGGCAATTCCTTTGGGAGGTGAAGGTTGAGAGTCCTGGTCTTAG  650

seq1  CCTTCAATGCAAGCCTGGAGCAGCCCTTGAGAAGGCAGGGCTCTCCTAAT  698
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCTTCAATGCAAGCCTGGAGCAGCCCTAGAGAAGGCAGGGCTCTCCTAAT  700

seq1  GGAAAGAGACTGAATTC  715
      |||||||||||||||||
seq2  GGAAAGAGACTGAATTC  717

seq1: chr12_19884525_19885485
seq2: B6Ng01-217N10.g_71_1044

seq1  GAATTCAGGAGAGCAGAACCAGGTTCTTCCAGTCCACAGACACCCCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGAGCAGAACCAGGTTCTTCCAGTCCACAGACACCCCCTCC  50

seq1  CCCACCAGGCAACTCTGAACACAGCCAGGACTCAGGGCAGCCTACAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCAGGCAACTCTGAACACAGCCAGGACTCAGGGCAGCCTACAACAG  100

seq1  TACTTTCAAACTTTCAGTGCACACACTGCTCCTGAGAGTGCTATTAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCAAACTTTCAGTGCACACACTGCTCCTGAGAGTGCTATTAAAAT  150

seq1  GCACCCTCTATTTCCACAGCTCTGCCATGGAACCTGAGGCTCTGCAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCTCTATTTCCACAGCTCTGCCATGGAACCTGAGGCTCTGCAAGTT  200

seq1  GCACACCTTACTGACTGGTGGTGTCAGGTGAAGCATTTTGGAGTTGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCTTACTGACTGGTGGTGTCAGGTGAAGCATTTTGGAGTTGCAAG  250

seq1  GGCCTAAAACTGTGCTCATCAACAGGACTTCCTGCAAGTATGGAGAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAAAACTGTGCTCATCAACAGGACTTCCTGCAAGTATGGAGAACAA  300

seq1  AGTCCTGAATCTACATCATGCAACAGAGTGGCTACCAACCCATGTGGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGAATCTACATCATGCAACAGAGTGGCTACCAACCCATGTGGCCA  350

seq1  CCAAGCATCTGAGACCAAGTAATGTTAGCAAAGAGCTAACTTTATTCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCATCTGAGACCAAGTAATGTTAGCAAAGAGCTAACTTTATTCTTG  400

seq1  GGCTACAATGCTGACCAAAAGCCAAAAGCGCAGTCCCCCACCATGAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAATGCTGACCAAAAGCCAAAAGCGCAGTCCCCCACCATGAAAGG  450

seq1  CCTGTGTAAATTCTTGGCCTAAGGAGCCTTCTGCAGTCTGGATGGATAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTAAATTCTTGGCCTAAGGAGCCTTCTGCAGTCTGGATGGATAGG  500

seq1  AAAATTCCACCAAAGGCCTAGTTGATCACCAGCCCAAGAGCGGATAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCCACCAAAGGCCTAGTTGATCACCAGCCCAAGAGCGGATAAATA  550

seq1  TTTCCCTAAGGTAAGGACACAGATATGG-AAGACTTGATTAAACCACCCT  599
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTCCCTAAGGTAAGGACACAGATATGGAAAGACTTGATTAAACCACCCT  600

seq1  GGAGCCTCTTACACCAGGCTTCCATTCAAGGCTCTTTCATCCACATCCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTCTTACACCAGGCTTCCATTCAAGGCTCTTTCATCCACATCCCT  650

seq1  GATCACATGTAAGCAGTGCCAGTCTTCCTGTTCTCTACATCATCACCATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACATGTAAGCAGTGCCAGTCTTCCTGTTCTCTACATCATCACCATA  700

seq1  GATGCTCTGATCACATGTAAGTGGTCCAGTCTTCCTGTTCTCTACATCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCTGATCACATGTAAGTGGTCCAGTCTTCCTGTTCTCTACATCAT  750

seq1  CATCATAGATGCTCTGATCACATGTAAGTGGTCCAGTCTTCCTGTTCTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAGATGCTCTGATCACATGTAAGTGGTCCAGTCTTCCTGTTCTCT  800

seq1  ACATCATCACCATAGATGCTCTGATCACATGTAAGCAGTCCAGTCTTCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATCACCATAGATGCTCTGATCACATGTAAGCAGTCCAGTCTTCCT  850

seq1  GTTCTCTACATCATCACCATAGATGCTCTGATCACATGTAAGTGGT-CCA  898
      || ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTCCTCTACATCATCACCATAGATGCTCTGATCACATGTAAGTGGTCCCA  900

seq1  GT-CTTCCT-GTTCTCTAT-ATC-ATCA-TCA-TAGATGC-TCTGATCAC  941
      || |||||| ||||||||| ||| |||| ||| ||||||| |||||||||
seq2  GTCCTTCCTGGTTCTCTATAATCAATCATTCATTAGATGCTTCTGATCAC  950

seq1  --ATGTAAG-CGGTCCC-AGGCTT  961
        ||||||| ||||||| ||||||
seq2  CAATGTAAGCCGGTCCCAAGGCTT  974