BAC Information

Click to search

BAC

Clone NameB6Ng01-218O09
Chromosome12 (Build37)
Map Location 62,773,152 - 62,931,655
singlet/doubletdoublet
Overlap geneLrfn5
Upstream geneLOC100040300, LOC665677, Nanog-ps2, LOC665699
Downstream geneLOC665707, LOC100040403, LOC665713, LOC622746, LOC100040438, 1700047L15Rik, Tspyl-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218O09.bB6Ng01-218O09.g
ACCGA034899GA034900
length1,1811,156
definitionB6Ng01-218O09.b B6Ng01-218O09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,773,152 - 62,774,332)(62,930,496 - 62,931,655)
sequence
gaattccattaggtaaatcatgtttcctcttgtatttgacaaatgtctcc
tctcacctcatctgcttagatttatctgcaaaaacaagaccctgtttttg
cttttctgaagcaggtacaaaagaatataaatcaaaattctcattaaacg
acaatcacacacttgtagaggaataaggataacacagtagaaaaggacct
actgcagagtaaaaaggaattgaaaagtaaaaattgtcatgtggcttaag
tgtgtgaaatagcatcatctaagacaatgaagatagattaattggaaatt
gaatttgtctggctttcagagatagatttcaaccttatacggctgtaaat
gagctgatgtgttgtccttttgagataaaaatcccagaagcttgagtgat
gatacagtcttccaaaagctcgtaagggctgaggacagaaatgcatttgg
cttagctggctgatcttgatggaaagtctgttgtctgtgcttctggtttg
tgttggcttgcagaacttctagtgcagtatttcctacagagcagtgccct
gtccagaggtctgcacagatgctctctgcctttgtagctagtgattactt
tacatatagagctaggagaaattaatgctctgtgagaagcactctcagca
atgggctttcggtgagaataagtaatctgcattgttaggtattggcttga
aaataaatcaggacaagccaatttatagtaattcaattttttggctatct
tggttaacctgatgaggacccttttcctgtagttagccaccatctatcag
tgaaggcaactgtggagtgtcgtcagattaaaatattacaggtaaatggt
tgcatctctcatcaacattaaacagattttggtgggcattacatcaagaa
aaatctgggcagtctatctaaaggctacttttagtgaaaatcaatgactt
actgtgggaagaaattcagaataaaagatatagtgctatacctccaacaa
aacttccagtgattttctaaattaacagactaagtacagaattatcagct
gagaagattaggaatattaagaaaatttggacacttgatttgaagtatgg
agtttaaattgccatacttgaatatagtgattgagtttgaaccaaaccta
ttttctagattcctaaggtgatggtattgaa

gaattctgtaggcttcttcatgagcatctctttctttagattagggaagt
tttcttctataattttgttgaagatatttactggctctttactttgggaa
tctttactctcttctatccctgttatccttaggtttggtcttcgcattgt
aataaataaataaatcatggatttatgggtatctaattaccatttctctt
ttctcttttctattttctcttttctcttttctcttttctcttttctcttt
tctcttcctttctttctttctttctttctttctttctttctttctttctt
tctttctttaactgttaaactattaggccttcttgggcctaactgctttc
ttttcttttcttttttttttaaatttaatactatttgtaatttatttttt
atactccatatttcatacctcgccctcccctcccaccctccactgctcaa
catcccacacctcctccctaccacacactgtctccatgtggattccccca
ccatccatcctatctaacctctaaactccctgggaccttcagtctcttga
gagttaggtgcatcatctctgaatgaacatagatctggaagtcctctact
gtatgtgtgttggaaacctcatatcagctggtgtatgatgtccttttggt
ggtacagtgtttgaaaatcttcaggggtccagattaattaagactgctgg
tcctcctataggattgtccttctcaaattctttcagccttccctaattca
acaacaggggtcagctgcttctgtcctttggttgggtgcaaatatatgta
tctgactctttcagcttcttgtaattgcacataaattacatacatttaat
tttcaaagataaactcaaaggtagaactattaattcattccaggtcatat
gaactgataaaatgtaattaagagtgaccccttctgaagctaacatcaca
cctagatattaggttatacattgtgaatatgtattatgtgttttactgta
gaaaggtaatgggtttttgagattcttacgttcataacataatttttcac
ttattttcaggtctccttggtgcattgtattgatgactgaacctaaagcc
ttttaattggccaatggccattgtatggcttaaatcagctatgatttacc
ttggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_62773152_62774332
seq2: B6Ng01-218O09.b_47_1227

seq1  GAATTCCATTAGGTAAATCATGTTTCCTCTTGTATTTGACAAATGTCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTAGGTAAATCATGTTTCCTCTTGTATTTGACAAATGTCTCC  50

seq1  TCTCACCTCATCTGCTTAGATTTATCTGCAAAAACAAGACCCTGTTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCTCATCTGCTTAGATTTATCTGCAAAAACAAGACCCTGTTTTTG  100

seq1  CTTTTCTGAAGCAGGTACAAAAGAATATAAATCAAAATTCTCATTAAACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGAAGCAGGTACAAAAGAATATAAATCAAAATTCTCATTAAACG  150

seq1  ACAATCACACACTTGTAGAGGAATAAGGATAACACAGTAGAAAAGGACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCACACACTTGTAGAGGAATAAGGATAACACAGTAGAAAAGGACCT  200

seq1  ACTGCAGAGTAAAAAGGAATTGAAAAGTAAAAATTGTCATGTGGCTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGAGTAAAAAGGAATTGAAAAGTAAAAATTGTCATGTGGCTTAAG  250

seq1  TGTGTGAAATAGCATCATCTAAGACAATGAAGATAGATTAATTGGAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAAATAGCATCATCTAAGACAATGAAGATAGATTAATTGGAAATT  300

seq1  GAATTTGTCTGGCTTTCAGAGATAGATTTCAACCTTATACGGCTGTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGTCTGGCTTTCAGAGATAGATTTCAACCTTATACGGCTGTAAAT  350

seq1  GAGCTGATGTGTTGTCCTTTTGAGATAAAAATCCCAGAAGCTTGAGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGATGTGTTGTCCTTTTGAGATAAAAATCCCAGAAGCTTGAGTGAT  400

seq1  GATACAGTCTTCCAAAAGCTCGTAAGGGCTGAGGACAGAAATGCATTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGTCTTCCAAAAGCTCGTAAGGGCTGAGGACAGAAATGCATTTGG  450

seq1  CTTAGCTGGCTGATCTTGATGGAAAGTCTGTTGTCTGTGCTTCTGGTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTGGCTGATCTTGATGGAAAGTCTGTTGTCTGTGCTTCTGGTTTG  500

seq1  TGTTGGCTTGCAGAACTTCTAGTGCAGTATTTCCTACAGAGCAGTGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCTTGCAGAACTTCTAGTGCAGTATTTCCTACAGAGCAGTGCCCT  550

seq1  GTCCAGAGGTCTGCACAGATGCTCTCTGCCTTTGTAGCTAGTGATTACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAGGTCTGCACAGATGCTCTCTGCCTTTGTAGCTAGTGATTACTT  600

seq1  TACATATAGAGCTAGGAGAAATTAATGCTCTGTGAGAAGCACTCTCAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATAGAGCTAGGAGAAATTAATGCTCTGTGAGAAGCACTCTCAGCA  650

seq1  ATGGGCTTTCGGTGAGAATAAGTAATCTGCATTGTTAGGTATTGGCTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTTTCGGTGAGAATAAGTAATCTGCATTGTTAGGTATTGGCTTGA  700

seq1  AAATAAATCAGGACAAGCCAATTTATAGTAATTCAATTTTTTGGCTATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATCAGGACAAGCCAATTTATAGTAATTCAATTTTTTGGCTATCT  750

seq1  TGGTTAACCTGATGAGGACCCTTTTCCTGTAGTTAGCCACCATCTATCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAACCTGATGAGGACCCTTTTCCTGTAGTTAGCCACCATCTATCAG  800

seq1  TGAAGGCAACTGTGGAGTGTCGTCAGATTAAAATATTACAGGTAAATGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCAACTGTGGAGTGTCGTCAGATTAAAATATTACAGGTAAATGGT  850

seq1  TGCATCTCTCATCAACATTAAACAGATTTTGGTGGGCATTACATCAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTCTCATCAACATTAAACAGATTTTGGTGGGCATTACATCAAGAA  900

seq1  AAATCTGGGCAGTCTATCTAAAGGCTACTTTTAGTGAAAATCAATGACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGGGCAGTCTATCTAAAGGCTACTTTTAGTGAAAATCAATGACTT  950

seq1  ACTGTGGGAAGAAATTCAGAATAAAAGAATATAGTGCTATACCTCCAACA  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACTGTGGGAAGAAATTCAGAATAAAAG-ATATAGTGCTATACCTCCAACA  999

seq1  AAACTTCCAGTGA-TTTCTAAATTAACAGACTAAGTAACAGAATTATCAG  1049
      ||||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  AAACTTCCAGTGATTTTCTAAATTAACAGACTAAGT-ACAGAATTATCAG  1048

seq1  CTGAGAAGATTAGGAATA-TAAGAAAATTTGGACACTTGATTTTGAAGTA  1098
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  CTGAGAAGATTAGGAATATTAAGAAAATTTGGACACTTGA-TTTGAAGTA  1097

seq1  TGAAG-TTAAATTG-CATACTTGACTATAGTGATTGAGTTTGGACACAAA  1146
      || || |||||||| ||||||||| ||||||||||||||||| || ||||
seq2  TGGAGTTTAAATTGCCATACTTGAATATAGTGATTGAGTTTGAAC-CAAA  1146

seq1  CATA-TTTCTAGATTTCTTAAAGTGATGGTAATGAA  1181
      | || |||||||| ||| ||| ||||||||| ||||
seq2  CCTATTTTCTAGA-TTCCTAAGGTGATGGTATTGAA  1181


seq1: chr12_62930496_62931655
seq2: B6Ng01-218O09.g_65_1220 (reverse)

seq1  TGCCAAAGTGAAATCATAGCTGGTATTTAAG-CATACAATTGGCATT-GC  48
      |||||| || ||||||||||||  ||||||| |||||||| | |||| ||
seq2  TGCCAAGGT-AAATCATAGCTG--ATTTAAGCCATACAATGGCCATTGGC  47

seq1  CATTTAAAAAGCTTTTAAGTCAGTCATCAATACAATGCACCAA-GAGACC  97
      || |||||| |||||    |||||||||||||||||||||||| ||||||
seq2  CAATTAAAAGGCTTTAGGTTCAGTCATCAATACAATGCACCAAGGAGACC  97

seq1  TGGAAAATAAGTGAAAAATTATGTTATGAACGTAAGAATCTCAAAAA-CC  146
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  T-GAAAATAAGTGAAAAATTATGTTATGAACGTAAGAATCTCAAAAACCC  146

seq1  ATTACCCTTTTCTACAGTAAAAACACATAATACATATTCACAATGTATAA  196
      ||||||  |||||||||| |||||||||||||||||||||||||||||||
seq2  ATTACC--TTTCTACAGT-AAAACACATAATACATATTCACAATGTATAA  193

seq1  CCTAATATTCTAGGTGTGATGTTAGCTTCAGAAGGGGTCACTCTTAATTA  246
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATA-TCTAGGTGTGATGTTAGCTTCAGAAGGGGTCACTCTTAATTA  242

seq1  CATTTTATCAGTTCATATGACCTGGAATGAATTAATAGTTCTACCTTTGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATCAGTTCATATGACCTGGAATGAATTAATAGTTCTACCTTTGA  292

seq1  GTTTATCTTTGAAAATTAAATGTATGTAATTTATGTGCAATTACAAGAAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCTTTGAAAATTAAATGTATGTAATTTATGTGCAATTACAAGAAG  342

seq1  CTGAAAGAGTCAGATACATATATTTGCACCCAACCAAAGGACAGAAGCAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGAGTCAGATACATATATTTGCACCCAACCAAAGGACAGAAGCAG  392

seq1  CTGACCCCTGTTGTTGAATTAGGGAAGGCTGAAAGAATTTGAGAAGGACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCCTGTTGTTGAATTAGGGAAGGCTGAAAGAATTTGAGAAGGACA  442

seq1  ATCCTATAGGAGGACCAGCAGTCTTAATTAATCTGGACCCCTGAAGATTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATAGGAGGACCAGCAGTCTTAATTAATCTGGACCCCTGAAGATTT  492

seq1  TCAAACACTGTACCACCAAAAGGACATCATACACCAGCTGATATGAGGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACACTGTACCACCAAAAGGACATCATACACCAGCTGATATGAGGTT  542

seq1  TCCAACACACATACAGTAGAGGACTTCCAGATCTATGTTCATTCAGAGAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACACACATACAGTAGAGGACTTCCAGATCTATGTTCATTCAGAGAT  592

seq1  GATGCACCTAACTCTCAAGAGACTGAAGGTCCCAGGGAGTTTAGAGGTTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACCTAACTCTCAAGAGACTGAAGGTCCCAGGGAGTTTAGAGGTTA  642

seq1  GATAGGATGGATGGTGGGGGAATCCACATGGAGACAGTGTGTGGTAGGGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGATGGATGGTGGGGGAATCCACATGGAGACAGTGTGTGGTAGGGA  692

seq1  GGAGGTGTGGGATGTTGAGCAGTGGAGGGTGGGAGGGGAGGGCGAGGTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGTGGGATGTTGAGCAGTGGAGGGTGGGAGGGGAGGGCGAGGTAT  742

seq1  GAAATATGGAGTATAAAAAATAAATTACAAATAGTATTAAATTTAAAAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGGAGTATAAAAAATAAATTACAAATAGTATTAAATTTAAAAAA  792

seq1  AAAAGAAAAGAAAAGAAAGCAGTTAGGCCCAAGAAGGCCTAATAGTTTAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAGAAAAGAAAGCAGTTAGGCCCAAGAAGGCCTAATAGTTTAA  842

seq1  CAGTTAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  892

seq1  AAGAAAGGAAGAGAAAAGAGAAAAGAGAAAAGAGAAAAGAGAAAAGAGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGAAGAGAAAAGAGAAAAGAGAAAAGAGAAAAGAGAAAAGAGAA  942

seq1  AATAGAAAAGAGAAAAGAGAAATGGTAATTAGATACCCATAAATCCATGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAAGAGAAAAGAGAAATGGTAATTAGATACCCATAAATCCATGA  992

seq1  TTTATTTATTTATTACAATGCGAAGACCAAACCTAAGGATAACAGGGATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTACAATGCGAAGACCAAACCTAAGGATAACAGGGATA  1042

seq1  GAAGAGAGTAAAGATTCCCAAAGTAAAGAGCCAGTAAATATCTTCAACAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGTAAAGATTCCCAAAGTAAAGAGCCAGTAAATATCTTCAACAA  1092

seq1  AATTATAGAAGAAAACTTCCCTAATCTAAAGAAAGAGATGCTCATGAAGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAGAAGAAAACTTCCCTAATCTAAAGAAAGAGATGCTCATGAAGA  1142

seq1  AGCCTACAGAATTC  1160
      ||||||||||||||
seq2  AGCCTACAGAATTC  1156


| Home | SequenceCutter | Blast | Download |