BAC Information

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BAC

Clone NameB6Ng01-219E20
Chromosome12 (Build37)
Map Location 107,800,623 - 107,951,014
singlet/doubletdoublet
Overlap genenone
Upstream geneBdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola, Vrk1, LOC100040386, LOC100040404, LOC100040420, 1700121N20Rik, LOC100041191, LOC100040451
Downstream geneLOC673604, LOC100040484, LOC382635, LOC100041251, LOC100040497, LOC668151
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219E20.bB6Ng01-219E20.g
ACCGA035180GA035181
length1,2081,087
definitionB6Ng01-219E20.b B6Ng01-219E20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,800,623 - 107,801,809)(107,949,954 - 107,951,014)
sequence
gaattctgtgagagatcaggtggaggatcggcaaaaagaggcaactatat
gggcacatagtacccggggacagccatgtggcagaatgtaggttaaaata
attgggttattttacttatgatctagtcagactagagcctaactatatgg
ccaaggtatttgtaaatatattttgagtctgagtcttatttctgggagcc
tggggccaggaggaagaactggatttaactacaacaaatatgtgtctctg
tttatttaaagtaatatatcaaaaatgaaataagacaacaatttaacaca
tgacaagcactgtgatgtaatgttgaagcagcacattttcagggacagga
ggcagaaagagggcagggtagggaaaacactgggatgaccagaagaaaac
agatacaacaaacaaggtactttgtactcaggaaaaagatacggatttgc
ccatcaggaggaagtctggttttaatactgtatttgttactttatgtcaa
tgagactctccagaaattttttgatcctgtctggttcttaatatcccctc
ttcaaattctgtttggtgaaatgtgttctggtggtttatttttagggttc
tgacataaagtgagagtcccctggccctgcctggatgctgactttagtgg
cagcgggtagaaaagtgtcatttttttttctaaaaatgtagcttacatct
cccttattccttcatacaaggtcagtgacagtgatattagtcctgtcttt
aggggctaaagtagcttaagagaaagaggtaagtcatggctgaaaactca
catttccctatgtttaagttttaatatatcatttctaagcctttacagac
ttgactttctgacccaatacatgtatggggcccaagagatcagggctcct
gcagggccattaattgcagggtttgtttcctggaagcaaaactaacacat
gctcatttaggacatcttaattgggaacaaaaattcaccatggagactgt
gaaacatgattttaggaagaagtggggtcatgctggtcagcttttcattt
ggaattttggttttatttcattttatttcaaatccttcccaggctcagaa
aacagccggttttgcgataaaaaaataattgtcttgagaaatgttcttcc
tgttacaattcctggctggtgaattttgccatactctaaatgtcccacca
aggggagc
gaattcactaagagatgaagattagctgaactgattctgtctatggatat
tttctcatgtgaaagccacctgaggggctcgctgcatacccagggcactg
ggaggttgattagcatgttgtcccccatccccctccaaggcagaggtcac
acaagcttctccctccaggtcccttcaagcccactggtaagcagtgctga
gtgctgttcgtgactctgggttcagtggaggctaggtgacaggagccctc
ttgggatagttgcaggggctgtctgaaaatcctcaggatgtttccaggct
gtttatatgatcatagagtcaatgtttatggatggggtgagtatgacctc
attgccaagttctgatgcaaagaacaacgccagaagaatcaggcagagat
accacatagatccacatctgctaagatttagggggaaaggggtaatctat
agtttatagaaggactaaccagcatttatgctccatagggaccagaaatg
tacaaacacttctctctcatctcgtgaaatgggaacagttcttatttccc
agattcccagatgagaaaacaggtccagagtggttaggtggttaggaagt
tcacacatggaggtagcaaggggtgaagactcactctgagttcacactca
tctacactagagttccagatgtgtgccttacataacacttcacaacttta
acccctggccccacagatcctcagctggcgacccacttcttctattagcc
ttggtttcttcatttacaaaatttgcagtagaaataaatcaagtgcctgg
attttattaaacaaaaagaagagttggaaaagctatgaaagccatgtgtt
gcttgaagtgagggcctcagcatatgccaataataccatttattattctt
actatgcttacagcttcctcttacgaagctgtctctaagtgatgaatagg
caatgataacgtgaggtctaaatctttggttgctccttttgaatagtttg
gatatcaaatacatatctaggttcctcctgtgaaaaaactttccttgatc
tgaattttttgaagatagaatatgtattccactctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_107800623_107801809
seq2: B6Ng01-219E20.b_45_1252

seq1  GAATTCTGTGAGAGATCAGGTGGAGGATCGGCAAAAAGAGGCAACTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAGAGATCAGGTGGAGGATCGGCAAAAAGAGGCAACTATAT  50

seq1  GGGCACATAGTACCCGGGGACAGCCATGTGGCAGAATGTAGGTTAAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACATAGTACCCGGGGACAGCCATGTGGCAGAATGTAGGTTAAAATA  100

seq1  ATTGGGTTATTTTACTTATGATCTAGTCAGACTAGAGCCTAACTATATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTTATTTTACTTATGATCTAGTCAGACTAGAGCCTAACTATATGG  150

seq1  CCAAGGTATTTGTAAATATATTTTGAGTCTGAGTCTTATTTCTGGGAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTATTTGTAAATATATTTTGAGTCTGAGTCTTATTTCTGGGAGCC  200

seq1  TGGGGCCAGGAGGAAGAACTGGATTTAACTACAACAAATATGTGTCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCAGGAGGAAGAACTGGATTTAACTACAACAAATATGTGTCTCTG  250

seq1  TTTATTTAAAGTAATATATCAAAAATGAAATAAGACAACAATTTAACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAAAGTAATATATCAAAAATGAAATAAGACAACAATTTAACACA  300

seq1  TGACAAGCACTGTGATGTAATGTTGAAGCAGCACATTTTCAGGGACAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGCACTGTGATGTAATGTTGAAGCAGCACATTTTCAGGGACAGGA  350

seq1  GGCAGAAAGAGGGCAGGGTAGGGAAAACACTGGGATGACCAGAAGAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAAGAGGGCAGGGTAGGGAAAACACTGGGATGACCAGAAGAAAAC  400

seq1  AGATACAACAAACAAGGTACTTTGTACTCAGGAAAAAGATACGGATTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAACAAACAAGGTACTTTGTACTCAGGAAAAAGATACGGATTTGC  450

seq1  CCATCAGGAGGAAGTCTGGTTTTAATACTGTATTTGTTACTTTATGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGGAGGAAGTCTGGTTTTAATACTGTATTTGTTACTTTATGTCAA  500

seq1  TGAGACTCTCCAGAAATTTTTTGATCCTGTCTGGTTCTTAATATCCCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTCTCCAGAAATTTTTTGATCCTGTCTGGTTCTTAATATCCCCTC  550

seq1  TTCAAATTCTGTTTGGTGAAATGTGTTCTGGTGGTTTATTTTTAGGGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTCTGTTTGGTGAAATGTGTTCTGGTGGTTTATTTTTAGGGTTC  600

seq1  TGACATAAAGTGAGAGTCCCCTGGCCCTGCCTGGATGCTGACTTTAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAAAGTGAGAGTCCCCTGGCCCTGCCTGGATGCTGACTTTAGTGG  650

seq1  CAGCGGGTAGAAAAGTGTCATTTTTTTTTCTAAAAATGTAGCTTACATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGGTAGAAAAGTGTCATTTTTTTTTCTAAAAATGTAGCTTACATCT  700

seq1  CCCTTATTCCTTCATACAAGGTCAGTGACAGTGATATTAGTCCTGTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTATTCCTTCATACAAGGTCAGTGACAGTGATATTAGTCCTGTCTTT  750

seq1  AGGGGCTAAAGTAGCTTAAGAGAAAGAGGTAAGTCATGGCTG-AAACTCA  799
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGGGGCTAAAGTAGCTTAAGAGAAAGAGGTAAGTCATGGCTGAAAACTCA  800

seq1  CATTTCCCTATGTTTAAGTTTTAATATATCATTTCTAAGCCTTTACAGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCTATGTTTAAGTTTTAATATATCATTTCTAAGCCTTTACAGAC  850

seq1  TTGACTTTCTGACCCAATACATGTATGGGGCCCAAGAGATCAGGGCTCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTTCTGACCCAATACATGTATGGGGCCCAAGAGATCAGGGCTCCT  900

seq1  GCAGGGCCATTAATTGCAGGGTTTGTTTCCTGGAAGCAAAACTAACACAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCCATTAATTGCAGGGTTTGTTTCCTGGAAGCAAAACTAACACAT  950

seq1  GCTCA-TTAGGACATCTTAATTGGGAACAAAAA-TCACCATGGAGACTGT  997
      ||||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCTCATTTAGGACATCTTAATTGGGAACAAAAATTCACCATGGAGACTGT  1000

seq1  G-AACATGA-TTTAGGAAG-AGT-GGGTCATGCTGGTCAGC-TTTCATTT  1042
      | ||||||| ||||||||| ||| ||||||||||||||||| ||||||||
seq2  GAAACATGATTTTAGGAAGAAGTGGGGTCATGCTGGTCAGCTTTTCATTT  1050

seq1  GGA--TTTTGTTTTATTTCATTTTATTTCAAATCCTTCCCAAGCTCAG-A  1089
      |||  ||| |||||||||||||||||||||||||||||||| |||||| |
seq2  GGAATTTTGGTTTTATTTCATTTTATTTCAAATCCTTCCCAGGCTCAGAA  1100

seq1  AACAGCCG--TTTGCGAT-AAAAAATAA-TGGCCTGAGAAATGTCCTT-C  1134
      ||||||||  |||||||| ||||||||| || | |||||||||| ||| |
seq2  AACAGCCGGTTTTGCGATAAAAAAATAATTGTCTTGAGAAATGTTCTTCC  1150

seq1  TGTAACA--TCCTGGCTGTGTG-AGTTTGCATAACTC-AAATGTCCCACC  1180
      ||| |||  ||||||||| ||| | |||||   |||| ||||||||||||
seq2  TGTTACAATTCCTGGCTG-GTGAATTTTGCCATACTCTAAATGTCCCACC  1199

seq1  A--GGGAGC  1187
      |  ||||||
seq2  AAGGGGAGC  1208

seq1: chr12_107949954_107951014
seq2: B6Ng01-219E20.g_66_1152 (reverse)

seq1  TAAG-GTGGAAT---CATTCTA-CTTCAAAAAA-TCTGATCAAGGAA--G  42
      |||| |||||||    |||||| |||||||||| || ||||||||||   
seq2  TAAGAGTGGAATACATATTCTATCTTCAAAAAATTCAGATCAAGGAAAGT  50

seq1  TCTCTCACAGGA-GAACCTAGTATTGTATTTGATATCAAACCTATTCATA  91
      | | |||||||| ||||||||   ||||||||||||| || ||||||| |
seq2  TTTTTCACAGGAGGAACCTAGATATGTATTTGATATCCAAACTATTCAAA  100

seq1  AGGA-CAACC-AAGA-TTAGGCCTCACGTAATCCATGCCCTATTCATCAC  138
      |||| ||||| |||| |||| |||||||| || |||  ||||||||||||
seq2  AGGAGCAACCAAAGATTTAGACCTCACGTTAT-CATTGCCTATTCATCAC  149

seq1  TTAGAGACAGC-TCGT-AGAGGAAGCTGT-AGCATAGTAAGAAT-ATAAA  184
      ||||||||||| |||| |||||||||||| |||||||||||||| |||||
seq2  TTAGAGACAGCTTCGTAAGAGGAAGCTGTAAGCATAGTAAGAATAATAAA  199

seq1  TGGTATTTATTGCATATGCTGA-GCCCTCACTTCAAGCAACACATGGC-T  232
      |||||||  | ||||||||||| ||||||||||||||||||||||||| |
seq2  TGGTATTATTGGCATATGCTGAGGCCCTCACTTCAAGCAACACATGGCTT  249

seq1  TCATAGC-TTTCCAACTCTTCTTTT--GTTAAT-AAATCCAGGCAC-TGA  277
      ||||||| |||||||||||||||||   ||||| |||||||||||| |||
seq2  TCATAGCTTTTCCAACTCTTCTTTTTGTTTAATAAAATCCAGGCACTTGA  299

seq1  -TTATTTCTACTGC-AATTTTGTAAATGAAGAAACCAA-GCTAATAGAAG  324
       ||||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  TTTATTTCTACTGCAAATTTTGTAAATGAAGAAACCAAGGCTAATAGAAG  349

seq1  AAGTGGGTCGCCAGCTGAGGATCTGT-GGGCCAGGGGTTAAAGTTGTGAA  373
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAGTGGGTCGCCAGCTGAGGATCTGTGGGGCCAGGGGTTAAAGTTGTGAA  399

seq1  GTGTTATGTAAGGCACACATCTGGAACTCTAGTGTAGATGAGTGTGAACT  423
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATGTAAGGCACACATCTGGAACTCTAGTGTAGATGAGTGTGAACT  449

seq1  CAGAGTGAGTCTTCACCCCTTGCTACCTCCATGTGTGAACTTCCTAACCA  473
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGAGTCTTCACCCCTTGCTACCTCCATGTGTGAACTTCCTAACCA  499

seq1  CCTAACCACTCTGGACCTGTTTTCTCATCTGGGAATCTGGGAAATAAGAA  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCACTCTGGACCTGTTTTCTCATCTGGGAATCTGGGAAATAAGAA  549

seq1  CTGTTCCCATTTCACGAGATGAGAGAGAAGTGTTTGTACATTTCTGGTCC  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCCATTTCACGAGATGAGAGAGAAGTGTTTGTACATTTCTGGTCC  599

seq1  CTATGGAGCATAAATGCTGGTTAGTCCTTCTATAAACTATAGATTACCCC  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAGCATAAATGCTGGTTAGTCCTTCTATAAACTATAGATTACCCC  649

seq1  TTTCCCCCTAAATCTTAGCAGATGTGGATCTATGTGGTATCTCTGCCTGA  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCCTAAATCTTAGCAGATGTGGATCTATGTGGTATCTCTGCCTGA  699

seq1  TTCTTCTGGCGTTGTTCTTTGCATCAGAACTTGGCAATGAGGTCATACTC  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGGCGTTGTTCTTTGCATCAGAACTTGGCAATGAGGTCATACTC  749

seq1  ACCCCATCCATAAACATTGACTCTATGATCATATAAACAGCCTGGAAACA  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATCCATAAACATTGACTCTATGATCATATAAACAGCCTGGAAACA  799

seq1  TCCTGAGGATTTTCAGACAGCCCCTGCAACTATCCCAAGAGGGCTCCTGT  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGGATTTTCAGACAGCCCCTGCAACTATCCCAAGAGGGCTCCTGT  849

seq1  CACCTAGCCTCCACTGAACCCAGAGTCACGAACAGCACTCAGCACTGCTT  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGCCTCCACTGAACCCAGAGTCACGAACAGCACTCAGCACTGCTT  899

seq1  ACCAGTGGGCTTGAAGGGACCTGGAGGGAGAAGCTTGTGTGACCTCTGCC  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGGGCTTGAAGGGACCTGGAGGGAGAAGCTTGTGTGACCTCTGCC  949

seq1  TTGGAGGGGGATGGGGGACAACATGCTAATCAACCTCCCAGTGCCCTGGG  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGGGGATGGGGGACAACATGCTAATCAACCTCCCAGTGCCCTGGG  999

seq1  TATGCAGCGAGCCCCTCAGGTGGCTTTCACATGAGAAAATATCCATAGAC  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGCGAGCCCCTCAGGTGGCTTTCACATGAGAAAATATCCATAGAC  1049

seq1  AGAATCAGTTCAGCTAATCTTCATCTCTTAGTGAATTC  1061
      ||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAGTTCAGCTAATCTTCATCTCTTAGTGAATTC  1087