BAC Information

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BAC

Clone NameB6Ng01-221D16
Chromosome12 (Build37)
Map Location 100,415,340 - 100,563,846
singlet/doubletdoublet
Overlap geneChes1
Upstream geneGalc, Gpr65, Kcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779
Downstream geneLOC100039892, 2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1, Ttc7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221D16.bB6Ng01-221D16.g
ACCGA036575GA036576
length9241,072
definitionB6Ng01-221D16.b B6Ng01-221D16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,415,340 - 100,416,261)(100,562,783 - 100,563,846)
sequence
gaattctatacccagcaaaaatatctttcaaagccaaaagctgaatgaac
tcatttctattaaacttgtactgtaaatattttacagtactaataattta
aatgcagtccttcagtcagaagaaaaattagagaaaatatactagataag
aatgtaaaggaacaaacgatattaagagtgatgttacttttttttttttt
ttttttaaatttatttattaattatatgtaagtacactgtagctgtcttc
agacactccagaagagggcatcagatctcgttatggatggttgtgagcca
ccatgtggttgctgggatttgaactcgggacctttggaagagcagtcggg
tgctcttacccactgagccatctcaccagcccgtgatgttactttttaaa
cacaaaagcagagtttctctttctcctgcctttgaattatttatttcctg
gagcagaaaatttatagtttggaacccatgatgtggcatgtcttctgcta
tggcctctagcaaatgactgagccaattattaatctcctgaagtcagtgt
ttctcacccgccaaacaggaaatgacgattctcagcttttgtttttgtga
aaataaaataaactagtaagcaatagcatccttttaagaattaaagtaac
agccgggcgtggtggatcatgcctttgatcccagcactgggaggcagagg
caggcggatttctgagttcgaggccagcctggtctacaaagtgagtttca
ggacagccagagctatacagaggaaccctgtctccaattaattaattaat
taattaaagtaacaaattaataaattaataaaaattaaactaatgtgtgt
taatagtgttatatatagttatatagcttcattctcaaataccctaaagc
tcattttttttttttttgaagaca
gaattctctgcccacatctccacagcttgtcaggctgagccatggtctca
tctgcactagcggtcatgattgcaaccgtttgtgtagcggttctcttagt
ttctccatcctttgggtgatgttttgccctaaccagtagacaaatggccg
taatctccgtttattcttccttttataagctctgcaggcactcttgcaaa
tagcagctgagatggcaggttcctgggcctgagtcacttagagtgatttc
tctgcagatccatctctgcttttgccctactttgagattgagaatcaaaa
taactggatgaacagaagtaggcaggggcaacaggctcctggaagttgga
tgtgtgtcttttctctgagccgagtaacatgtttgagactttaatacaaa
gcagtttctgtgtgcataaagttaccacagcttggagtcacctgccggcc
ttgaggattttggatactttcttactgcaagcacttctttgcttttgacc
cccctccccctctaccaaccaggtctgtgtttccagcaaccctgccagaa
cctccgtagcccccagatcttcctcaatacaaagcgccccctttggctct
gccagtggttactgggagctaaggagcttcagacatcatttgttacattg
agactgccgtgataatgactttggaactcctagcttgcctgtgggggtct
tgggtcgactctcgtctttcctacgttagctctgctggcattcagaactg
gagattctttagacatttagaagcatacataatctccacccgtgagatac
cagttacactctccaagatcaaaaagaggagtgggtggtggctggtgtgc
ccaggattgccagagtaacactggtggaggaccacctggcaaaaccccac
agttctttctgaggtgttgttatattgagcaccctatttaggttttctat
ttaggaaaaaaaaaggaaaaggccctggggttttatcctcagtttaattt
gttaatcccattacattaatacagaactcagctcttttagaaggcatatg
aaagtctggttaagctggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_100415340_100416261
seq2: B6Ng01-221D16.b_44_967

seq1  GAATTCTATACCCAGCAAAAATATCTTTCAAAGCCAAAAGCTGAATGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATACCCAGCAAAAATATCTTTCAAAGCCAAAAGCTGAATGAAC  50

seq1  TCATTTCTATTAAACTTGTACTGTAAATATTTTACAGTACTAATAATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTATTAAACTTGTACTGTAAATATTTTACAGTACTAATAATTTA  100

seq1  AATGCAGTCCTTCAGTCAGAAGAAAAATTAGAGAAAATATACTAGATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGTCCTTCAGTCAGAAGAAAAATTAGAGAAAATATACTAGATAAG  150

seq1  AATGTAAAGGAACAAACGATATTAAGAGTGATGTTACTTTTTTTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAGGAACAAACGATATTAAGAGTGATGTTACTTTTTTTTTTTTT  200

seq1  TTTTTTAAATTTATTTATTAATTATATGTAAGTACACTGTAGCTGTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAATTTATTTATTAATTATATGTAAGTACACTGTAGCTGTCTTC  250

seq1  AGACACTCCAGAAGAGGGCATCAGATCTCGTTATGGATGGTTGTGAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTCCAGAAGAGGGCATCAGATCTCGTTATGGATGGTTGTGAGCCA  300

seq1  CCATGTGGTTGCTGGGATTTGAACTCGGGACCTTTGGAAGAGCAGTCGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGGTTGCTGGGATTTGAACTCGGGACCTTTGGAAGAGCAGTCGGG  350

seq1  TGCTCTTACCCACTGAGCCATCTCACCAGCCCGTGATGTTACTTTTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTACCCACTGAGCCATCTCACCAGCCCGTGATGTTACTTTTTAAA  400

seq1  CACAAAAGCAGAGTTTCTCTTTCTCCTGCCTTTGAATTATTTATTTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGCAGAGTTTCTCTTTCTCCTGCCTTTGAATTATTTATTTCCTG  450

seq1  GAGCAGAAAATTTATAGTTTGGAACCCATGATGTGGCATGTCTTCTGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAAAATTTATAGTTTGGAACCCATGATGTGGCATGTCTTCTGCTA  500

seq1  TGGCCTCTAGCAAATGACTGAGCCAATTATTAATCTCCTGAAGTCAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCTAGCAAATGACTGAGCCAATTATTAATCTCCTGAAGTCAGTGT  550

seq1  TTCTCACCCGCCAAACAGGAAATGACGATTCTCAGCTTTTGTTTTTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACCCGCCAAACAGGAAATGACGATTCTCAGCTTTTGTTTTTGTGA  600

seq1  AAATAAAATAAACTAGTAAGCAATAGCATCCTTTTAAGAATTAAAGTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATAAACTAGTAAGCAATAGCATCCTTTTAAGAATTAAAGTAAC  650

seq1  AGCCGGGCGTGGTGGATCATGCCTTTGATCCCAGCACTGGGAGGCAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGGCGTGGTGGATCATGCCTTTGATCCCAGCACTGGGAGGCAGAGG  700

seq1  CAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTTCA  750

seq1  GGACAGCCAGAGCTATACAGAGGAACCCTGTCTCCAATTAATTAATTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCAGAGCTATACAGAGGAACCCTGTCTCCAATTAATTAATTAAT  800

seq1  TAATTAAAGTAACAAATTAATAAATAAATAAAAATTAAACTAATGTGTGT  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAATTAAAGTAACAAATTAATAAATTAATAAAAATTAAACTAATGTGTGT  850

seq1  TAATAGTGTTATATATTAGTTATATAGCTTCATTCTCAAATACCCTAAGG  900
      ||||||||||||||| |||||||||||||||||||||||||||||||| |
seq2  TAATAGTGTTATATA-TAGTTATATAGCTTCATTCTCAAATACCCTAAAG  899

seq1  CTCATTTTTTTTTTTT---GAGACA  922
      ||||||||||||||||    |||||
seq2  CTCATTTTTTTTTTTTTTGAAGACA  924

seq1: chr12_100562783_100563846
seq2: B6Ng01-221D16.g_65_1136 (reverse)

seq1  TTCCCCAGC-TAACCAGAC-TTCATATGCCCTCT-AAAGAGCTGAGTTCT  47
      ||||||||| ||||||||| |||||||||| ||| |||||||||||||||
seq2  TTCCCCAGCTTAACCAGACTTTCATATGCCTTCTAAAAGAGCTGAGTTCT  50

seq1  GTATTAATGTAATGGGGATTAAACAAATTAAACTGAGGATAAAACCCCAG  97
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  GTATTAATGTAAT-GGGATT-AACAAATTAAACTGAGGATAAAACCCCAG  98

seq1  GGCC-TTTCCTTTTTTTTTCCTAAATAGAAAACCT-AATAGGGTGCTCAA  145
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGCCTTTTCCTTTTTTTTTCCTAAATAGAAAACCTAAATAGGGTGCTCAA  148

seq1  TATA--CACACCTCAG-AAGAACTGTGGGG-TTTGCCAGGTGGTCCTCCA  191
      ||||   ||||||||| ||||||||||||| |||||||||||||||||||
seq2  TATAACAACACCTCAGAAAGAACTGTGGGGTTTTGCCAGGTGGTCCTCCA  198

seq1  CCAGTGTTACTCTGGC-ATCCTGGGCACACCAGCCACCACCCACTCCTCT  240
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCAGTGTTACTCTGGCAATCCTGGGCACACCAGCCACCACCCACTCCTCT  248

seq1  TTTTGATCTTGGAGAGTGTAACTGGTATCTCACGGGTGGAGATTATGTAT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATCTTGGAGAGTGTAACTGGTATCTCACGGGTGGAGATTATGTAT  298

seq1  GCTTCTAAATGTCTAAAGAATCTCCAGTTCTGAATGCCAGCAGAGCTAAC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAAATGTCTAAAGAATCTCCAGTTCTGAATGCCAGCAGAGCTAAC  348

seq1  GTAGGAAAGACGAGAGTCGACCCAAGACCCCCACAGGCAAGCTAGGAGTT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAAGACGAGAGTCGACCCAAGACCCCCACAGGCAAGCTAGGAGTT  398

seq1  CCAAAGTCATTATCACGGCAGTCTCAATGTAACAAATGATGTCTGAAGCT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTCATTATCACGGCAGTCTCAATGTAACAAATGATGTCTGAAGCT  448

seq1  CCTTAGCTCCCAGTAACCACTGGCAGAGCCAAAGGGGGCGCTTTGTATTG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCTCCCAGTAACCACTGGCAGAGCCAAAGGGGGCGCTTTGTATTG  498

seq1  AGGAAGATCTGGGGGCTACGGAGGTTCTGGCAGGGTTGCTGGAAACACAG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGATCTGGGGGCTACGGAGGTTCTGGCAGGGTTGCTGGAAACACAG  548

seq1  ACCTGGTTGGTAGAGGGGGAGGGGGGTCAAAAGCAAAGAAGTGCTTGCAG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTTGGTAGAGGGGGAGGGGGGTCAAAAGCAAAGAAGTGCTTGCAG  598

seq1  TAAGAAAGTATCCAAAATCCTCAAGGCCGGCAGGTGACTCCAAGCTGTGG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAGTATCCAAAATCCTCAAGGCCGGCAGGTGACTCCAAGCTGTGG  648

seq1  TAACTTTATGCACACAGAAACTGCTTTGTATTAAAGTCTCAAACATGTTA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTATGCACACAGAAACTGCTTTGTATTAAAGTCTCAAACATGTTA  698

seq1  CTCGGCTCAGAGAAAAGACACACATCCAACTTCCAGGAGCCTGTTGCCCC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCTCAGAGAAAAGACACACATCCAACTTCCAGGAGCCTGTTGCCCC  748

seq1  TGCCTACTTCTGTTCATCCAGTTATTTTGATTCTCAATCTCAAAGTAGGG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACTTCTGTTCATCCAGTTATTTTGATTCTCAATCTCAAAGTAGGG  798

seq1  CAAAAGCAGAGATGGATCTGCAGAGAAATCACTCTAAGTGACTCAGGCCC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAGAGATGGATCTGCAGAGAAATCACTCTAAGTGACTCAGGCCC  848

seq1  AGGAACCTGCCATCTCAGCTGCTATTTGCAAGAGTGCCTGCAGAGCTTAT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCTGCCATCTCAGCTGCTATTTGCAAGAGTGCCTGCAGAGCTTAT  898

seq1  AAAAGGAAGAATAAACGGAGATTACGGCCATTTGTCTACTGGTTAGGGCA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAGAATAAACGGAGATTACGGCCATTTGTCTACTGGTTAGGGCA  948

seq1  AAACATCACCCAAAGGATGGAGAAACTAAGAGAACCGCTACACAAACGGT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCACCCAAAGGATGGAGAAACTAAGAGAACCGCTACACAAACGGT  998

seq1  TGCAATCATGACCGCTAGTGCAGATGAGACCATGGCTCAGCCTGACAAGC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCATGACCGCTAGTGCAGATGAGACCATGGCTCAGCCTGACAAGC  1048

seq1  TGTGGAGATGTGGGCAGAGAATTC  1064
      ||||||||||||||||||||||||
seq2  TGTGGAGATGTGGGCAGAGAATTC  1072