BAC Information

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BAC

Clone NameB6Ng01-221L13
Chromosome12 (Build37)
Map Location 46,506,791 - 46,658,316
singlet/doubletdoublet
Overlap genenone
Upstream geneNrcam, EG620025, Stxbp6
Downstream geneLOC664952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221L13.bB6Ng01-221L13.g
ACCGA036936GA036937
length649805
definitionB6Ng01-221L13.b B6Ng01-221L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,506,791 - 46,507,439)(46,657,519 - 46,658,316)
sequence
gaattctacctagaaaatatatatttctaatgtaagtacatttttatgtg
acaggttttaatatcctattgagatagattttataaaatatgtcagtttg
taacaaggtacagagctagtaagaactgatagggttttaatatgctggaa
aagtcttttgggtattcagcacagtatatgaggaacttcaaagttagcaa
agtgctttaaaattaaccaaggaaaaccaacaactcttcttgtacccatg
aaagaagtgaggtcacactgaaagcatcagaggatacagaaaaccacgac
cttaccagagcaaaacctaggactacaaacttcctcaaagctattacttc
tggaaaaaaagaaaaagcatctcttaatgtggccaatcagaggtaaacta
cagggatggtgcagaggagagtcatatattcctgtgagctttatctctgg
aaaactgtctaggttctcacataaaatatcaggaaaaaaacactctccct
tctgccagggacggagataaaagccacaatgaaacaggtcacctcagttt
gttcttaacaagtatttctctctaatgagaaattgcttaatcagagctac
accttctgtgctttgggatggagagggttggaaagagtgaggtgggtgg

gaattcccatgaccgtttgccagaactacctcgagttgtctgctggaata
tactaggataactccagcacaaacatcccaacatgaataggcattctgtt
ccagcagaactgggcagtccatgctgagaatctctgagataatgaggcag
cctcttcttcagacctgtcctagtttgcctttttgctaccatgagaaaac
gtcataacgaaaagtaacttgggaggaaagaggtttttttttttgtgcca
ggaagtgttagtgaaccccaaaagaccaccaagaagctgattttggtgta
attacattagggtctctttattacaaattcgagtttgggcttactcactg
acaacctgcaggacagtttggtgcagcagacccaaattcttatcagggca
aggtttaatgggaaatgggagtgtgtaagggtttatctatccagccaagc
atctaattgtatgacagagaggtgtgtgttctaaagcaagaccaactctg
aataatcacaagttgtcttgaaagtgcatctgaaaccatcagactaatct
ttgattaactgtttgccaggaagtagctagggagtaactctggccaaggg
caagctgtggtgtccttcttcgcactagggtgaagctttaggttttagct
gcaggtcaaatcttcttttaagatcaaagctggtttccaagatgaagtag
gttttggcctctcagtttacccatccttaacagaatccatttaggaactc
aagcagggcaggaatacgaaggtagtagcgttctcagcctcctttcttcc
tccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_46506791_46507439
seq2: B6Ng01-221L13.b_50_698

seq1  GAATTCTACCTAGAAAATATATATTTCTAATGTAAGTACATTTTTATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCTAGAAAATATATATTTCTAATGTAAGTACATTTTTATGTG  50

seq1  ACAGGTTTTAATATCCTATTGAGATAGATTTTATAAAATATGTCAGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTTTAATATCCTATTGAGATAGATTTTATAAAATATGTCAGTTTG  100

seq1  TAACAAGGTACAGAGCTAGTAAGAACTGATAGGGTTTTAATATGCTGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGGTACAGAGCTAGTAAGAACTGATAGGGTTTTAATATGCTGGAA  150

seq1  AAGTCTTTTGGGTATTCAGCACAGTATATGAGGAACTTCAAAGTTAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTTTGGGTATTCAGCACAGTATATGAGGAACTTCAAAGTTAGCAA  200

seq1  AGTGCTTTAAAATTAACCAAGGAAAACCAACAACTCTTCTTGTACCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTAAAATTAACCAAGGAAAACCAACAACTCTTCTTGTACCCATG  250

seq1  AAAGAAGTGAGGTCACACTGAAAGCATCAGAGGATACAGAAAACCACGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGTGAGGTCACACTGAAAGCATCAGAGGATACAGAAAACCACGAC  300

seq1  CTTACCAGAGCAAAACCTAGGACTACAAACTTCCTCAAAGCTATTACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCAGAGCAAAACCTAGGACTACAAACTTCCTCAAAGCTATTACTTC  350

seq1  TGGAAAAAAAGAAAAAGCATCTCTTAATGTGGCCAATCAGAGGTAAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAAAAGAAAAAGCATCTCTTAATGTGGCCAATCAGAGGTAAACTA  400

seq1  CAGGGATGGTGCAGAGGAGAGTCATATATTCCTGTGAGCTTTATCTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATGGTGCAGAGGAGAGTCATATATTCCTGTGAGCTTTATCTCTGG  450

seq1  AAAACTGTCTAGGTTCTCACATAAAATATCAGGAAAAAAACACTCTCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTCTAGGTTCTCACATAAAATATCAGGAAAAAAACACTCTCCCT  500

seq1  TCTGCCAGGGACGGAGATAAAAGCCACAATGAAACAGGTCACCTCAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAGGGACGGAGATAAAAGCCACAATGAAACAGGTCACCTCAGTTT  550

seq1  GTTCTTAACAAGTATTTCTCTCTAATGAGAAATTGCTTAATCAGAGCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAACAAGTATTTCTCTCTAATGAGAAATTGCTTAATCAGAGCTAC  600

seq1  ACCTTCTGTGCTTTGGGATGGAGAGGGTTGGAAAGAGTGAGGTGGGTGG  649
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTGTGCTTTGGGATGGAGAGGGTTGGAAAGAGTGAGGTGGGTGG  649


seq1: chr12_46657519_46658316
seq2: B6Ng01-221L13.g_66_870 (reverse)

seq1  AGGGAGGAAGGAAGGAGGCTGAGAACGCTACTACCTTCGTATTCCTGCCC  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGAAGAAAGGAGGCTGAGAACGCTACTACCTTCGTATTCCTGCCC  50

seq1  TGCTTGAGTTCCT-AATGGATTCTGTTAAGGATGGGTAAACTGAGAGGCC  99
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGCTTGAGTTCCTAAATGGATTCTGTTAAGGATGGGTAAACTGAGAGGCC  100

seq1  -AAACCTACTTCATCTTGG-AACCAGCTTTGATCTTAAAAGAAGATTTGA  147
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAAACCTACTTCATCTTGGAAACCAGCTTTGATCTTAAAAGAAGATTTGA  150

seq1  CCTGCAGCT-AAACCT-AAGCTTCACCCTAGTGCGAAGAAGGACACCACA  195
      ||||||||| |||||| |||||||||||||||||||||||||||||||||
seq2  CCTGCAGCTAAAACCTAAAGCTTCACCCTAGTGCGAAGAAGGACACCACA  200

seq1  GCTTGCCCTTGGCCAGAGTTACTCCCTAGCTACTTCCTGGC-AACAGTTA  244
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCTTGCCCTTGGCCAGAGTTACTCCCTAGCTACTTCCTGGCAAACAGTTA  250

seq1  ATCAAAGATTAGTCTGATGGTTTCAGATGCACTTTC-AGACAACTTGTGA  293
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATCAAAGATTAGTCTGATGGTTTCAGATGCACTTTCAAGACAACTTGTGA  300

seq1  TTATTCAGAGTTGGTCTTGCTTTAGAACACACACCTCTCTGTCATACAAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAGAGTTGGTCTTGCTTTAGAACACACACCTCTCTGTCATACAAT  350

seq1  TAGATGCTTGGCTGGATAGATAAACCCTTACACACTCCCATTTCCCATTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCTTGGCTGGATAGATAAACCCTTACACACTCCCATTTCCCATTA  400

seq1  AACCTTGCCCTGATAAGAATTTGGGTCTGCTGCACCAAACTGTCCTGCAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGCCCTGATAAGAATTTGGGTCTGCTGCACCAAACTGTCCTGCAG  450

seq1  GTTGTCAGTGAGTAAGCCCAAACTCGAATTTGTAATAAAGAGACCCTAAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAGTGAGTAAGCCCAAACTCGAATTTGTAATAAAGAGACCCTAAT  500

seq1  GTAATTACACCAAAATCAGCTTCTTGGTGGTCTTTTGGGGTTCACTAACA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTACACCAAAATCAGCTTCTTGGTGGTCTTTTGGGGTTCACTAACA  550

seq1  CTTCCTGGCACAAAAAAAAAAACCTCTTTCCTCCCAAGTTACTTTTCGTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGCACAAAAAAAAAAACCTCTTTCCTCCCAAGTTACTTTTCGTT  600

seq1  ATGACGTTTTCTCATGGTAGCAAAAAGGCAAACTAGGACAGGTCTGAAGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGTTTTCTCATGGTAGCAAAAAGGCAAACTAGGACAGGTCTGAAGA  650

seq1  AGAGGCTGCCTCATTATCTCAGAGATTCTCAGCATGGACTGCCCAGTTCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTGCCTCATTATCTCAGAGATTCTCAGCATGGACTGCCCAGTTCT  700

seq1  GCTGGAACAGAATGCCTATTCATGTTGGGATGTTTGTGCTGGAGTTATCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAACAGAATGCCTATTCATGTTGGGATGTTTGTGCTGGAGTTATCC  750

seq1  TAGTATATTCCAGCAGACAACTCGAGGTAGTTCTGGCAAACGGTCATGGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATATTCCAGCAGACAACTCGAGGTAGTTCTGGCAAACGGTCATGGG  800

seq1  AATTC  798
      |||||
seq2  AATTC  805


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