BAC Information

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BAC

Clone NameB6Ng01-222L07
Chromosome12 (Build37)
Map Location 119,063,349 - 119,194,847
singlet/doubletdoublet
Overlap geneCdca7l, Dnahc11
Upstream genePtprn2, LOC432713, LOC100042461, Rapgef5, A930023M06Rik
Downstream geneSp4, LOC100042993, LOC668611, EG668615, LOC620665, Sp8, Abcb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222L07.bB6Ng01-222L07.g
ACCGA037649GA037650
length1,151530
definitionB6Ng01-222L07.b B6Ng01-222L07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,063,349 - 119,064,485)(119,194,286 - 119,194,847)
sequence
gaattcctcttctctcactatttttcctttttcaatgtttttgtcgttat
tattgcatggtttatttttctatatgaactttagtaccaacttatctaac
tccataaaaacaattactgatattttaatgggaatgcattaaaaggcata
tatcaaccttggaagaacaggtaaactcattctttcattcaataacatat
gtttaaaataaaccattttgttaaagaaaatagtatacatgtattgggct
gtctacatattcccaagcctccaattgacttttcatctctagttgcattg
acgaatctcttaatcgaacccttagtaatacagacagcagagggtattgc
tgctccattgctaatgttactgaaagtatatctaatactgccctgtcaag
taagtcagctttagggtttaaatacagactatacacacgcgcatacacac
ataaagcatctttcaactgttttgttattttgagctttaaatctctggta
ttgaattttaatatgtttttttcagaaggtaacgaaatggttgtgatatt
tccctaaatctataaacttggtatattatgttaatagatttccttatatt
gaactaaccttgcattttccaggaatgttttgacacttaaaactttaagt
ttacatttgaaatgtaatactgtgaattaggttaaatctgctaagtgaag
tactattctcaaaagttgattcaaaagtccaaaaccacattcgaccttta
tcatttaagtgtaacaaaaacacccccagccctgtttttatttttttata
tgtcaccatataaaagggtatctacaggggctaactgcacggaagagtaa
ttgatagttagtccatgactaaatacatcatgaaaaagcaacacacacac
acatacacacacacacagtgtatgtatacatgtatgtgtttatataggtg
tagaagactggtaccatacttgaaaggccatcaacaatttcacttttcat
tttaagggattgctagagtggaagccctgtctagtttggaatttcaattg
cctgttgaagaagaaaaccatgccaaggtaactctataaaaaagaaaaac
attaaatgaagttggctccacagcttcgaagttaggtccattatcactca
t
agattcataatgacagacacagaggtagtagatgctggagctggggtggg
ggtggggatgttctgaatagacacaagattcagtttgggaggatgaaaaa
ggtctatagatggaggtgggtgatagccccatgatatcatgagtacgtat
tgctactgggctgtgggtatttaaaaagccatatgtatgttgtgtataat
ttgccataagaaagaaaacccatggtaaggtaacagcctagatgtcctaa
ggctgttaaggtatataaagagggaagagaggtacaaaatcaagataatt
ggatttgaaatgtcaagtgagttgtaagatagtttcatgtgttctaagat
caagagcagtaactgcaatccgacatgtcgtgcatggagagagacaggta
cctaaagaggaagatacatatgctcttcttgttcccacatgcctccccag
gatgctaggatggacagagaggaggttccttctatgcatttcaggtactt
gagagttaatagcaaaacttggaaaagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_119063349_119064485
seq2: B6Ng01-222L07.b_46_1196

seq1  GAATTCCTCTTCTCTCACTATTTTTCCTTTTTCAATGTTTTTGTCGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTCTCTCACTATTTTTCCTTTTTCAATGTTTTTGTCGTTAT  50

seq1  TATTGCATGGTTTATTTTTCTATATGAACTTTAGTACCAACTTATCTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCATGGTTTATTTTTCTATATGAACTTTAGTACCAACTTATCTAAC  100

seq1  TCCATAAAAACAATTACTGATATTTTAATGGGAATGCATTAAAAGGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAAAACAATTACTGATATTTTAATGGGAATGCATTAAAAGGCATA  150

seq1  TATCAACCTTGGAAGAACAGGTAAACTCATTCTTTCATTCAATAACATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACCTTGGAAGAACAGGTAAACTCATTCTTTCATTCAATAACATAT  200

seq1  GTTTAAAATAAACCATTTTGTTAAAGAAAATAGTATACATGTATTGGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAATAAACCATTTTGTTAAAGAAAATAGTATACATGTATTGGGCT  250

seq1  GTCTACATATTCCCAAGCCTCCAATTGACTTTTCATCTCTAGTTGCATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACATATTCCCAAGCCTCCAATTGACTTTTCATCTCTAGTTGCATTG  300

seq1  ACGAATCTCTTAATCGAACCCTTAGTAATACAGACAGCAGAGGGTATTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATCTCTTAATCGAACCCTTAGTAATACAGACAGCAGAGGGTATTGC  350

seq1  TGCTCCATTGCTAATGTTACTGAAAGTATATCTAATACTGCCCTGTCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCATTGCTAATGTTACTGAAAGTATATCTAATACTGCCCTGTCAAG  400

seq1  TAAGTCAGCTTTAGGGTTTAAATACAGACTATACACACGCGCATACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCAGCTTTAGGGTTTAAATACAGACTATACACACGCGCATACACAC  450

seq1  ATAAAGCATCTTTCAACTGTTTTGTTATTTTGAGCTTTAAATCTCTGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCATCTTTCAACTGTTTTGTTATTTTGAGCTTTAAATCTCTGGTA  500

seq1  TTGAATTTTAATATGTTTTTTTCAGAAGGTAACGAAATGGTTGTGATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTTAATATGTTTTTTTCAGAAGGTAACGAAATGGTTGTGATATT  550

seq1  TCCCTAAATCTATAAACTTGGTATATTATGTTAATAGATTTCCTTATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAAATCTATAAACTTGGTATATTATGTTAATAGATTTCCTTATATT  600

seq1  GAACTAACCTTGCATTTTCCAGGAATGTTTTGACACTTAAAACTTTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAACCTTGCATTTTCCAGGAATGTTTTGACACTTAAAACTTTAAGT  650

seq1  TTACATTTGAAATGTAATACTGTGAATTAGGTTAAATCTGCTAAGTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTGAAATGTAATACTGTGAATTAGGTTAAATCTGCTAAGTGAAG  700

seq1  TACTATTCTCAAAAGTTGATTCAAAAGTCCAAAACCACATTCGACCTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTCTCAAAAGTTGATTCAAAAGTCCAAAACCACATTCGACCTTTA  750

seq1  TCA-TTAAGTGTAACAAAAACACCCCCAGCCCTGTTTTTA-TTTTTTATA  798
      ||| |||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCATTTAAGTGTAACAAAAACACCCCCAGCCCTGTTTTTATTTTTTTATA  800

seq1  TGTCACCATATAAAAGGGTATCTACAGGGGCTAACTGCACGGAAGAGTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCATATAAAAGGGTATCTACAGGGGCTAACTGCACGGAAGAGTAA  850

seq1  TTGATAGTTAGTCCATGACTAAATACATCATGAAAAAGCAACACACACAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGTTAGTCCATGACTAAATACATCATGAAAAAGCAACACACACAC  900

seq1  ACATACACACACACACAGTGTATGTATACATGTATGTGTTTATATAGGTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACACACACACAGTGTATGTATACATGTATGTGTTTATATAGGTG  950

seq1  TAGAAGACTGGTA-CATACTTG-AAGGCCAATCACAATTTCACTTTTCAT  996
      ||||||||||||| |||||||| |||||||   |||||||||||||||||
seq2  TAGAAGACTGGTACCATACTTGAAAGGCCATCAACAATTTCACTTTTCAT  1000

seq1  TTT-AGGGATTGCTAGAGTGGA--GCCTGTCTTAGTTTGG-ATTTC-ATT  1041
      ||| ||||||||||||||||||   |||||| |||||||| ||||| |||
seq2  TTTAAGGGATTGCTAGAGTGGAAGCCCTGTC-TAGTTTGGAATTTCAATT  1049

seq1  G-CTG-TGAAGA--GACACCATGCCAAGGTAACTCT-TATAAAAGAAAAC  1086
      | ||| ||||||   | ||||||||||||||||||| || ||||||||| 
seq2  GCCTGTTGAAGAAGAAAACCATGCCAAGGTAACTCTATAAAAAAGAAAAA  1099

seq1  ATTTAATTGAAGTTGGCT-CACAGCTTCAGAGGTTTAGTCCATTATCA-T  1134
        |||| ||||||||||| ||||||||| || |||  ||||||||||| |
seq2  CATTAAATGAAGTTGGCTCCACAGCTTC-GAAGTTAGGTCCATTATCACT  1148

seq1  CAT  1137
      |||
seq2  CAT  1151

seq1: chr12_119194286_119194847
seq2: B6Ng01-222L07.g_72_607 (reverse)

seq1  TGGCTGGTTACTTCCCTCTGGTCCCTATTGGC-TTTCCAAGTTTTGCTAT  49
                                  |||| |||||||||||||||||
seq2  ----------------------------TGGCTTTTCCAAGTTTTGCTAT  22

seq1  TAACTCTCAAGTACCTG-AATGCATAGAAGGAACCTCCTCTCTGTCCATC  98
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAACTCTCAAGTACCTGAAATGCATAGAAGGAACCTCCTCTCTGTCCATC  72

seq1  CTAGCATCCTGGGGAGGCATGTGGGAACAAGAAGAGCATATGTATCTTCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATCCTGGGGAGGCATGTGGGAACAAGAAGAGCATATGTATCTTCC  122

seq1  TCTTTAGGTACCTGTCTCTCTCCATGCACGACATGTCGGATTGCAGTTAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGGTACCTGTCTCTCTCCATGCACGACATGTCGGATTGCAGTTAC  172

seq1  TGCTCTTGATCTTAGAACACATGAAACTATCTTACAACTCACTTGACATT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTGATCTTAGAACACATGAAACTATCTTACAACTCACTTGACATT  222

seq1  TCAAATCCAATTATCTTGATTTTGTACCTCTCTTCCCTCTTTATATACCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCCAATTATCTTGATTTTGTACCTCTCTTCCCTCTTTATATACCT  272

seq1  TAACAGCCTTAGGACATCTAGGCTGTTACCTTACCATGGGTTTTCTTTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCCTTAGGACATCTAGGCTGTTACCTTACCATGGGTTTTCTTTCT  322

seq1  TATGGCAAATTATACACAACATACATATGGCTTTTTAAATACCCACAGCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCAAATTATACACAACATACATATGGCTTTTTAAATACCCACAGCC  372

seq1  CAGTAGCAATACGTACTCATGATATCATGGGGCTATCACCCACCTCCATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCAATACGTACTCATGATATCATGGGGCTATCACCCACCTCCATC  422

seq1  TATAGACCTTTTTCATCCTCCCAAACTGAATCTTGTGTCTATTCAGAACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACCTTTTTCATCCTCCCAAACTGAATCTTGTGTCTATTCAGAACA  472

seq1  TCCCCACCCCCACCCCAGCTCCAGCATCTACTACCTCTGTGTCTGTCATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACCCCCACCCCAGCTCCAGCATCTACTACCTCTGTGTCTGTCATT  522

seq1  ATGAATCTGAATTC  562
      ||||||||||||||
seq2  ATGAATCTGAATTC  536