BAC Information

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BAC

Clone NameB6Ng01-223A10
Chromosome12 (Build37)
Map Location 86,060,169 - 86,217,535
singlet/doubletdoublet
Overlap geneNpc2, Isca2, Ltbp2
Upstream genePsen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a
Downstream gene1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223A10.bB6Ng01-223A10.g
ACCGA037884GA037885
length1,122917
definitionB6Ng01-223A10.b B6Ng01-223A10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,060,169 - 86,061,281)(86,216,620 - 86,217,535)
sequence
gaattcataggaaagttggaaaacacaagcaacaaatttggtctaaattt
agaacacttcattcaaaggtagtgtcttggtgagttagtaccattaagtt
gacaaggcctagagtcactggggagagggacactcaactgaagaactgcc
tccatcactctggcctgtgggcattgtcttgattaataattgatgtggga
ggacttggctcagtccagcccactggagagagagttcagcagttatgagc
acttgatgctcttctggagaccctggttcaggagttggtggtacacagcc
acctggaactccagctccaggggatctgactcctcctcctccccctcctc
ttccctctcctccttctcctctttatttatttatttatttatttttattt
ttatgcacactggtgttttgcctatatgtatatctttgtgagagagttgg
aactgaaggcttgggtcctctggaaaagcagtcagtgtttttatttttta
aagatttatttatttattttatgtatatgagtacagtgtagctgtcttca
aacacaccagaagaggacatcagatctcattacagatggttgtgagccac
catgtagttgctgggaattgaactcaggatccctagaagagccatcagta
ttcttaattactgagccatctctacagccccttgacatcctcttctgacc
tctgcaggcaccagacatgaattcaatacacagtaaaaattctaatttaa
aaaatactaaaatgatactttaaaccttaccatagccataaatcatatta
aagatgaaatactctaaacattcctaaaaaaagacacaggttaacagatt
atatttataacaaagcaaaatccaagaccactatgtatgtatatatacat
agtgttgacaataattatactctaagctggaccaggtggcacaggcctgt
gatcacaaattcttcaggagtctgaagcaggaggattgctctttaatgcc
tggtctactacacattccaggtgagccaaggctacatgatgagacttctc
taaaagcagaagaaagagggggcttcccaaggacttctttctggataagc
acttccggacacaccgggtggg
gaattcttgtctcccgtaataagggggccgagctgtccctccaaggaggg
gggcatggcgtggataaaagaggcgaaaaagcagggggcggtttccaaaa
ataaaacccttcggttccccttcagacggcggcagtgcgggagcgaaggt
gcggcaggctcgggctcggtgcgcagcccgggcagctcacgccatacagc
ccttacctaggaacccctggacccccaaacggctgtttcagaggtcccct
agacgggaaggggcaagtcgccaggcgggtctgtggagcgaacgatggaa
agcacctccccgcgaggtctccggtgcccacagctctgcagccactctgg
cgccatgagagcgccgaccaccgctcgctgctccggatgcatccgacggg
tgcgttggaggggcttcctgccacttgtcctggctgtcttgatggggaca
agtcatgcccaacgggattccatagggagatacgaaccagctagcaggga
tgcgaatcggttgtggcaccccgtgggcagccaccccgcagcggctgcag
ccaaggtgtacagtctgttccgagagcctgacgcgccggtccccggcttg
tcgccctctgagtggaaccagccggcccaggggaaccctgggaggctcgc
agaggccgaggccaggaggccaccccgaacccagcagctgcgtcgagtcc
agccacctgtccagactcggagaagccatccccggggccagcagcagata
gcagccagggctgcaccttctgtcgcgcgcctgggaaacccctcagcgac
ccgcggctgcacggcgagggcggctcaccgggtgagcactgaagagggga
tagggctggggccggggtggagcaagggatgcgggtatcccggacagtta
cgcctttccgtggagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_86060169_86061281
seq2: B6Ng01-223A10.b_46_1167

seq1  GAATTCATAGGAAAGTTGGAAAACACAAGCAACAAATTTGGTCTAAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGGAAAGTTGGAAAACACAAGCAACAAATTTGGTCTAAATTT  50

seq1  AGAACACTTCATTCAAAGGTAGTGTCTTGGTGAGTTAGTACCATTAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACTTCATTCAAAGGTAGTGTCTTGGTGAGTTAGTACCATTAAGTT  100

seq1  GACAAGGCCTAGAGTCACTGGGGAGAGGGACACTCAACTGAAGAACTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGCCTAGAGTCACTGGGGAGAGGGACACTCAACTGAAGAACTGCC  150

seq1  TCCATCACTCTGGCCTGTGGGCATTGTCTTGATTAATAATTGATGTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCACTCTGGCCTGTGGGCATTGTCTTGATTAATAATTGATGTGGGA  200

seq1  GGACTTGGCTCAGTCCAGCCCACTGGAGAGAGAGTTCAGCAGTTATGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGGCTCAGTCCAGCCCACTGGAGAGAGAGTTCAGCAGTTATGAGC  250

seq1  ACTTGATGCTCTTCTGGAGACCCTGGTTCAGGAGTTGGTGGTACACAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATGCTCTTCTGGAGACCCTGGTTCAGGAGTTGGTGGTACACAGCC  300

seq1  ACCTGGAACTCCAGCTCCAGGGGATCTGACTCCTCCTCCTCCCCCTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAACTCCAGCTCCAGGGGATCTGACTCCTCCTCCTCCCCCTCCTC  350

seq1  TTCCCTCTCCTCCTTCTCCTCTTTATTTATTTATTTATTTATTTTTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTCCTCCTTCTCCTCTTTATTTATTTATTTATTTATTTTTATTT  400

seq1  TTATGCACACTGGTGTTTTGCCTATATGTATATCTTTGTGAGAGAGTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCACACTGGTGTTTTGCCTATATGTATATCTTTGTGAGAGAGTTGG  450

seq1  AACTGAAGGCTTGGGTCCTCTGGAAAAGCAGTCAGTGTTTTTATTTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGGCTTGGGTCCTCTGGAAAAGCAGTCAGTGTTTTTATTTTTTA  500

seq1  AAGATTTATTTATTTATTTTATGTATATGAGTACAGTGTAGCTGTCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTATTTATTTATTTTATGTATATGAGTACAGTGTAGCTGTCTTCA  550

seq1  AACACACCAGAAGAGGACATCAGATCTCATTACAGATGGTTGTGAGCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACCAGAAGAGGACATCAGATCTCATTACAGATGGTTGTGAGCCAC  600

seq1  CATGTAGTTGCTGGGAATTGAACTCAGGATCCCTAGAAGAGCCATCAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGTTGCTGGGAATTGAACTCAGGATCCCTAGAAGAGCCATCAGTA  650

seq1  TTCTTAATTACTGAGCCATCTCTACAGCCCCTTGACATCCTCTTCTGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATTACTGAGCCATCTCTACAGCCCCTTGACATCCTCTTCTGACC  700

seq1  TCTGCAGGCACCAGACATGAATTCAATACACAGTAAAAATTCTAATTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGGCACCAGACATGAATTCAATACACAGTAAAAATTCTAATTTAA  750

seq1  AAAATACTAAAATGATACTTTAAACCTTACCATAGCCAT-AATCATATTA  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAATACTAAAATGATACTTTAAACCTTACCATAGCCATAAATCATATTA  800

seq1  AAGATGAAATACTCTAAACATTCCTAAAAAAAGACACAGGTTAACAGATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAAATACTCTAAACATTCCTAAAAAAAGACACAGGTTAACAGATT  850

seq1  ATATTTATAACAAAGCAAAATCCAAGACCACTATGTATGTATATATACAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATAACAAAGCAAAATCCAAGACCACTATGTATGTATATATACAT  900

seq1  AGTGTTGACAATAATTATACTCTAAGCTGGACCAGGTGGCACAGGCCTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGACAATAATTATACTCTAAGCTGGACCAGGTGGCACAGGCCTGT  950

seq1  GATCACAAA-TCCTCAGGAGTCTGAGGCAGGAGGATTGCTCTTTAATGCC  998
      ||||||||| || |||||||||||| ||||||||||||||||||||||||
seq2  GATCACAAATTCTTCAGGAGTCTGAAGCAGGAGGATTGCTCTTTAATGCC  1000

seq1  TGGTCTACTACACATTCCAGGTGAGCCAAGGCTACATGATGAGAC-TCTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGTCTACTACACATTCCAGGTGAGCCAAGGCTACATGATGAGACTTCTC  1050

seq1  TAAAAGCAGAAGAAGAAGGGGGCTTCCCAGGGAC-TCTTTCTGGATAAGC  1096
      ||||||||||||||  ||||||||||||| |||| |||||||||||||||
seq2  TAAAAGCAGAAGAAAGAGGGGGCTTCCCAAGGACTTCTTTCTGGATAAGC  1100

seq1  ACT--CGGACA---CCGGTGGG  1113
      |||  ||||||   | ||||||
seq2  ACTTCCGGACACACCGGGTGGG  1122

seq1: chr12_86216620_86217535
seq2: B6Ng01-223A10.g_68_984 (reverse)

seq1  CACTCCACTG-AAGGCGTAACTGTCCGGGATACCCGCATCCCTTTGCTCC  49
      |||||||| | ||||||||||||||||||||||||||||||| |||||||
seq2  CACTCCACGGAAAGGCGTAACTGTCCGGGATACCCGCATCCC-TTGCTCC  49

seq1  ACCCCGCCCCCAGCCCTATCCCCTCTTCAGTGCTCACCCGGTGAGCCGCC  99
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGGCCCCAGCCCTATCCCCTCTTCAGTGCTCACCCGGTGAGCCGCC  99

seq1  CTCGCCGTGCAGCCGCGGGTCGCTGAGGGGTTT-CCAGGCGCGCGACAGA  148
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCGCCGTGCAGCCGCGGGTCGCTGAGGGGTTTCCCAGGCGCGCGACAGA  149

seq1  AGGTGCAGCCCTGGCTGCTATCTGCTGCTGGCCCCGGGGATGGCTTCTCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCAGCCCTGGCTGCTATCTGCTGCTGGCCCCGGGGATGGCTTCTCC  199

seq1  GAGTCTGGACAGGTGGCTGGACTCGACGCAGCTGCTGGGTTCGGGGTGGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGGACAGGTGGCTGGACTCGACGCAGCTGCTGGGTTCGGGGTGGC  249

seq1  CTCCTGGCCTCGGCCTCTGCGAGCCTCCCAGGGTTCCCCTGGGCCGGCTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCCTCGGCCTCTGCGAGCCTCCCAGGGTTCCCCTGGGCCGGCTG  299

seq1  GTTCCACTCAGAGGGCGACAAGCCGGGGACCGGCGCGTCAGGCTCTCGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACTCAGAGGGCGACAAGCCGGGGACCGGCGCGTCAGGCTCTCGGA  349

seq1  ACAGACTGTACACCTTGGCTGCAGCCGCTGCGGGGTGGCTGCCCACGGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGTACACCTTGGCTGCAGCCGCTGCGGGGTGGCTGCCCACGGGG  399

seq1  TGCCACAACCGATTCGCATCCCTGCTAGCTGGTTCGTATCTCCCTATGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAACCGATTCGCATCCCTGCTAGCTGGTTCGTATCTCCCTATGGA  449

seq1  ATCCCGTTGGGCATGACTTGTCCCCATCAAGACAGCCAGGACAAGTGGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCGTTGGGCATGACTTGTCCCCATCAAGACAGCCAGGACAAGTGGCA  499

seq1  GGAAGCCCCTCCAACGCACCCGTCGGATGCATCCGGAGCAGCGAGCGGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCCCTCCAACGCACCCGTCGGATGCATCCGGAGCAGCGAGCGGTG  549

seq1  GTCGGCGCTCTCATGGCGCCAGAGTGGCTGCAGAGCTGTGGGCACCGGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGCGCTCTCATGGCGCCAGAGTGGCTGCAGAGCTGTGGGCACCGGAG  599

seq1  ACCTCGCGGGGAGGTGCTTTCCATCGTTCGCTCCACAGACCCGCCTGGCG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCGCGGGGAGGTGCTTTCCATCGTTCGCTCCACAGACCCGCCTGGCG  649

seq1  ACTTGCCCCTTCCCGTCTAGGGGACCTCTGAAACAGCCGTTTGGGGGTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCCCTTCCCGTCTAGGGGACCTCTGAAACAGCCGTTTGGGGGTCC  699

seq1  AGGGGTTCCTAGGTAAGGGCTGTATGGCGTGAGCTGCCCGGGCTGCGCAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTCCTAGGTAAGGGCTGTATGGCGTGAGCTGCCCGGGCTGCGCAC  749

seq1  CGAGCCCGAGCCTGCCGCACCTTCGCTCCCGCACTGCCGCCGTCTGAAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCCCGAGCCTGCCGCACCTTCGCTCCCGCACTGCCGCCGTCTGAAGG  799

seq1  GGAACCGAAGGGTTTTATTTTTGGAAACCGCCCCCTGCTTTTTCGCCTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCGAAGGGTTTTATTTTTGGAAACCGCCCCCTGCTTTTTCGCCTCT  849

seq1  TTTATCCACGCCATGCCCCCCTCCTTGGAGGGACAGCTCGGCCCCCTTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCACGCCATGCCCCCCTCCTTGGAGGGACAGCTCGGCCCCCTTAT  899

seq1  TACGGGAGACAAGAATTC  916
      ||||||||||||||||||
seq2  TACGGGAGACAAGAATTC  917