BAC Information

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BAC

Clone NameB6Ng01-223G05
Chromosome12 (Build37)
Map Location 51,206,904 - 51,208,007
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424, LOC665071, LOC665077, LOC100039455
Downstream genePrkcm, LOC100039517
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223G05.bB6Ng01-223G05.g
ACCGA038145GA038146
length1,1291,090
definitionB6Ng01-223G05.b B6Ng01-223G05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcaatacttttagtcatgaaggggtgttgtcaaaggttggttt
ttgtcaaatgctttacagcatctaatgagataatcatgtgatttttttct
ttcaatgtgtttatatggtagattatactgacagatttttatatattgag
ccagccctacatctctctaatgaagcattcttaacagtgttgtatgacag
ttgtttttatgtgttcctgaattcagtttgcaagcattttattgaatgtt
tttgcatatatgttcatgaaggacattggcctgtaattcttttttgagtc
tttgtgtagtttgggtatcacggtacctatgatttcacaaatgagtttgg
caatgctgcttatgtttctattttgtagaataatttgaggagtattgcta
ttagttcttctttaaatatttggtagaattctgtgctaaaatcaactgac
cctggacttttttggttgggagactcttcatgactgcttctattccctta
ggttttgtagacctatttaaattgtttatctgatctttatctaactttgg
taagttttatatatcaagaaaattgttcacttcttttacgttgttcaatt
ttgtgaagtattggtttttaaagtatgacatgatgatttttttggatttc
cttggttgttatatacccatttttgtttctcattgtgatgatttggatat
tctctatgtgtgttttagttaatttggataacgttttttttctatcttgt
tcattttctaaaaggaccaactaatatagcactgatttagccctcagttt
gactatatcctccttgcctactcttgcttgtgtttgcttatttttttcta
gagctttcagttgctgttaagttgctattaggagatccttctgacttcta
tatgtaggcacttagtggtattaactttctttttaacactagtttcatta
tgttccataagttttggtatgtgtgttcttcactttcataaattgtagga
tatccttttatttcctttatttccttctttaatcagtagaagggtgttca
ggttcattgagatccatgttgtttctatcccatggactgtctgaaaggat
aacaggtgcaatttcatgttaattaatct

gaattcttctgctacctgttccttcatcaaacttttctcataattacatg
aatgtgcttattcacaacatacttaatattttcttaaacttatctaccaa
attggtacaaattaaccttgattatagttgttgatttttatttactattt
tataatatctccttccctcattatgtaatgtaaaaggacaaaaaaggcat
accagtgtaaaaacaaatttacaatagtataacttcactatagtaaatat
ttttgtagtcaaagaaaatgtcttaaaagagctttcctcaaaaccaaaca
ttaatcctgaaacccattatgacactcttcagtctggggcaggaatttaa
attgttcccatctttattattaatctaggtcagacattgatttcccaatg
gagttttctagtatctttattataaagccctccatttcctctaaacaagt
tggcatacagttaccagcatccttgaccattgtgctgtgaatatgaatct
attgcatcattcaccaggcaaataatccacactttaaaggtctgcagcct
tccgtcagtgttctctcagttactgatttataacaagcatagctgtgccc
tttggtcaatatctggtatttttgattgaacaatttaataaataaatgaa
atggtaattgaaaaaacaagtgcacagttttggagagtaggagctccaag
aatgatggaaacagcaagtgtcaaaaataattctgccttccttcttatgt
cagttttaatagtgctagaatttgttttgttttgttttacccaaatggag
acctttgacaactatagttacaacacagaatagtgccatagccacatcct
gaagaaccttgattacaatcaaatggacctaaaatttctataatttccaa
acaaaagatcatatatggcatgctcaaaattctgttactggaaaaccaga
gaacattttcttctttttctacatgcctcttgataaatcatgaaaatggc
accagttatacatcttcactgcataataaagacatcatgatgtatttcat
ttttattttacaatttccatcgtaaaatactcagtacagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_51206904_51208007
seq2: B6Ng01-223G05.g_68_1157

seq1  GAATTCTTCTGCTACCTGTTCCTTCATCAAACTTTTCTCATAATTACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGCTACCTGTTCCTTCATCAAACTTTTCTCATAATTACATG  50

seq1  AATGTGCTTATTCACAACATACTTAATATTTTCTTAAACTTATCTACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCTTATTCACAACATACTTAATATTTTCTTAAACTTATCTACCAA  100

seq1  ATTGGTACAAATTAACCTTGATTATAGTTGTTGATTTTTATTTACTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTACAAATTAACCTTGATTATAGTTGTTGATTTTTATTTACTATTT  150

seq1  TATAATATCTCCTTCCCTCATTATGTAATGTAAAAGGACAAAAAAGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATCTCCTTCCCTCATTATGTAATGTAAAAGGACAAAAAAGGCAT  200

seq1  ACCAGTGTAAAAACAAATTTACAATAGTATAACTTCACTATAGTAAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGTAAAAACAAATTTACAATAGTATAACTTCACTATAGTAAATAT  250

seq1  TTTTGTAGTCAAAGAAAATGTCTTAAAAGAGCTTTCCTCAAAACCAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAGTCAAAGAAAATGTCTTAAAAGAGCTTTCCTCAAAACCAAACA  300

seq1  TTAATCCTGAAACCCATTATGACACTCTTCAGTCTGGGGCAGGAATTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCTGAAACCCATTATGACACTCTTCAGTCTGGGGCAGGAATTTAA  350

seq1  ATTGTTCCCATCTTTATTATTAATCTAGGTCAGACATTGATTTCCCAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCCCATCTTTATTATTAATCTAGGTCAGACATTGATTTCCCAATG  400

seq1  GAGTTTTCTAGTATCTTTATTATAAAGCCCTCCATTTCCTCTAAACAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTCTAGTATCTTTATTATAAAGCCCTCCATTTCCTCTAAACAAGT  450

seq1  TGGCATACAGTTACCAGCATCCTTGACCATTGTGCTGTGAATATGAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATACAGTTACCAGCATCCTTGACCATTGTGCTGTGAATATGAATCT  500

seq1  ATTGCATCATTCACCAGGCAAATAATCCACACTTTAAAGGTCTGCAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATCATTCACCAGGCAAATAATCCACACTTTAAAGGTCTGCAGCCT  550

seq1  TCCGTCAGTGTTCTCTCAGTTACTGATTTATAACAAGCATAGCTGTGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCAGTGTTCTCTCAGTTACTGATTTATAACAAGCATAGCTGTGCCC  600

seq1  TTTGGTCAATATCTGGTATTTTTGATTGAACAATTTAATAAATAAATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCAATATCTGGTATTTTTGATTGAACAATTTAATAAATAAATGAA  650

seq1  ATGGTAATTGAAAAAACAAGTGCACAGTTTTGGAGAGTAGGAGCTCCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAATTGAAAAAACAAGTGCACAGTTTTGGAGAGTAGGAGCTCCAAG  700

seq1  AATGATGGAAACAGCAAGTGTCAAAAATAATTCTGCCTTCCTTCTTATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGGAAACAGCAAGTGTCAAAAATAATTCTGCCTTCCTTCTTATGT  750

seq1  CAGTTTTAATAGTGCTAGAATTTGTTTTGTTTTGTTTTACCCAAATGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTAATAGTGCTAGAATTTGTTTTGTTTTGTTTTACCCAAATGGAG  800

seq1  ACCTTTGACAACTATAGTTACAACACAGAATAGTGCCATAGCCACATCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGACAACTATAGTTACAACACAGAATAGTGCCATAGCCACATCCT  850

seq1  GAAGAACCTTGATTACAATCAAATGGACCTAAAATTTCTATAATTTCCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACCTTGATTACAATCAAATGGACCTAAAATTTCTATAATTTCCAA  900

seq1  ACAAAAGATCATATATGGCATGCTCAAAATTCTGTTACTGGAAAACCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGATCATATATGGCATGCTCAAAATTCTGTTACTGGAAAACCAGA  950

seq1  GAAACATTTTCTTCTTTTTTCCTACCATGGCCTCTTGATAAATCATGAAA  1000
      | |||||||||||||||||  ||| ||| |||||||||||||||||||||
seq2  G-AACATTTTCTTCTTTTT--CTA-CAT-GCCTCTTGATAAATCATGAAA  995

seq1  ATGCCACCAGTTAATTACATCTTTCACTGCAATAATAAAGACCATCATGA  1050
      ||| |||||||||  |||||| |||||||| |||||||||| ||||||||
seq2  ATGGCACCAGTTA--TACATC-TTCACTGC-ATAATAAAGA-CATCATGA  1040

seq1  TGTATTTCA-TTTTATTTTACATATTTTCAATCCTTAAAAATTACTCAGT  1099
      ||||||||| |||||||||||  | |||| ||| |   ||| ||||||||
seq2  TGTATTTCATTTTTATTTTAC--AATTTCCATCGT---AAAATACTCAGT  1085

seq1  ACAGG  1104
      |||||
seq2  ACAGG  1090


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