BAC Information

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BAC

Clone NameB6Ng01-223G10
Chromosome12 (Build37)
Map Location 21,020,380 - 21,161,721
singlet/doubletdoublet
Overlap geneLOC546752, EG629257, Ddef2
Upstream geneLOC100042727, LOC673301, EG668605, LOC668614, LOC100042751, LOC100043371, EG668455, LOC100042755, LOC100043377, LOC625810, 1700030C10Rik, 3110053B16Rik, LOC668698
Downstream geneItgb1bp1, Cpsf3, Iah1, Adam17, Ywhaq, LOC100043407, LOC100042796, 6030426L16Rik, LOC434693, EG668645, EG668646
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223G10.bB6Ng01-223G10.g
ACCGA038155GA038156
length1,0891,012
definitionB6Ng01-223G10.b B6Ng01-223G10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,160,628 - 21,161,721)(21,020,380 - 21,020,925)
sequence
gaattccagcgcttgggaggtagaggcaggtggaactttgtgagtctggg
gccagcctgggctacaaaatgaattccaggacagccaggactacaaagag
aaaccctatctcgaaaaacaaaacaaaaaaaaaaagatttactttttgat
tatgtatatgagtgttttgcctgcatgtatttctatgcacttcatgtaca
accacctatagagaacaggagagtcagatcatctgtgagacagttgtgag
cggccaggggggtactgagaaccaaacccttgacctctataagagcaaca
aatgttttgaatagctgagccatctctctagtcacctgttcatttatttt
tttattgacgcttttgaccaaagccaccaagccttcagataacaccccca
cccccacccctaagttcgcagcacagaggatgagtgggggccatacacag
aagagaaatgtggccaaagctaggtgagtaggagccggatgcagcaggaa
agcaggcaagcaggatcgggatgaggtaaggctgggctgggtccctgtca
ctgagaaagggacaggaagtgcagcaaagggcagaggcagctcctggctg
tactgcaagggtcagcagcagggaagtttattttcctcactggaggaagc
cagtccctcctcaaggaagggctctggccaatagttatcctgcctttttg
ttttcagtccagaggaagaaaaaaaaaaaaaaagcctggaaatcgcagga
aagggaaagtgagaagccttggctgagccatctacacacaaaatggcaca
accagactccctcgtgcccacaggaacatctgtgaaaactgatgacagag
aaaagggcctaagggtccctgacaggctacaggacacaatgcctgccacc
tcatgcattgcaagcaccatcccaaggcatgggcccatggtcaatacaaa
ctcaagacagggcaacccagctcacaggtgagaacgcacaattgaccatg
aatgtaccaactcaaggcaaatgcatggatgataaaccaatgagcctggg
tctctttgatggcttacagggagagcttgggcgagaacc
gaattcctcctttttaaaaaaaaaaaaaacaaggaaacattgccttaaga
gatacctttattcaatttgtacctctattagacctatactgatctgacaa
tgtgtatagacttacaagacttagatattgcacatcgaatagtgataaat
atgtatccaaaaccttccaataattaaataatccatgggaaagttggtga
tactcatattcttatactgaaattgatcatttgtttagggtacagtttat
gagagtcaagagtgttgtcataggagaaaccttaattcatgtattacacg
tctatgaggaacaaaaggtcaaacagtgtgaatgcaatgtggaaaccttt
catctgttactcttctttttatatgtatgtcatgtgtcacaatggataaa
agccatgtgagcttaggaatattgaaagaagcaatgttctgctttctatc
acagaataatgagaaaatatgtcagattctgtctttggtagacaatctga
atatgataaaagtttgcaatgaattggttttctaattttactgggaactt
ccccaagctcacactgtagaaaatctttatgggtactaggaatttggaaa
ttcttttgtttgtcctggttcacagtcaaatgtggtataattcatggtat
aggaaaaattatgaaagcaattagttttataaagctctgaggtgttccat
tttcctcatatagatgaaatacatcatataaatatcccatataaaaagga
tgttataaatatgagccatgtaataacccatcacagatatctcgaaagat
gcaaaacaacccataatgagggagaacaccatgaacatatgaagtgataa
aaccagatgatctggtccaccttttatcagtagaccaatttgtaaacttt
attcatcttgatgaaatgactgaacagggaaattaatgtagtaaaacatt
tcacatgtggccaattttcattgcaggtatgtaaggtatcattagtggag
agaaactctatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_21160628_21161721
seq2: B6Ng01-223G10.b_47_1135 (reverse)

seq1  GGTTCCTCGCCC--GCTCT-CCTGTAAGCCCATCAAAGAAGACCCA-GCT  46
      |||| |||||||  ||||| |||||||| ||||||||| ||||||| |||
seq2  GGTT-CTCGCCCAAGCTCTCCCTGTAAG-CCATCAAAG-AGACCCAGGCT  47

seq1  CATTGTGTTTATCCTCCATGCATTTGGCCTTTGGAGTTGGTACA-TCATT  95
      ||||| ||||||| ||||||||||| |||||  ||||||||||| |||| 
seq2  CATTG-GTTTATCATCCATGCATTT-GCCTT--GAGTTGGTACATTCATG  93

seq1  GTTCATTGTGCG-TCTCA-CTGTGAGCTGGGGTTTGCCTGTCCTTGAGTT  143
      ||  |||||||| ||||| ||||||||| |||||  ||||| ||||||||
seq2  GTCAATTGTGCGTTCTCACCTGTGAGCT-GGGTTGCCCTGT-CTTGAGTT  141

seq1  TGTATTGACCATGGGGCCCATGCTTTGGGATGGTGCTTGCAATGCATGAG  193
      |||||||||||| |||||||||| ||||||||||||||||||||||||||
seq2  TGTATTGACCAT-GGGCCCATGCCTTGGGATGGTGCTTGCAATGCATGAG  190

seq1  GTGGGCAGGCATTGTGTCCTGTAGCCTGTCAGGGACCC-TAGGCCCTTTT  242
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GT-GGCAGGCATTGTGTCCTGTAGCCTGTCAGGGACCCTTAGGCCCTTTT  239

seq1  CTCTGTCATCAGTTTTCACAGATGTTCCTGTGGGCACGAGGGAGTCTGGT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCATCAGTTTTCACAGATGTTCCTGTGGGCACGAGGGAGTCTGGT  289

seq1  TGTGCCATTTTGTGTGTAGATGGCTCAGCCAAGGCTTCTCACTTTCCCTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCATTTTGTGTGTAGATGGCTCAGCCAAGGCTTCTCACTTTCCCTT  339

seq1  TTCCCTGCGATTTCCAGGCTTTTTTTTTTTTTTTCTTCCTCTGGACTGAA  392
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  T--CCTGCGATTTCCAGGCTTTTTTTTTTTTTTTCTTCCTCTGGACTGAA  387

seq1  AACAAAAAGGCAGGATAACTATTGGCCAGAGCCCTTCCTTGAGGAGGGAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAGGCAGGATAACTATTGGCCAGAGCCCTTCCTTGAGGAGGGAC  437

seq1  TGGCTTCCTCCAGTGAGGAAAATAAACTTCCCTGCTGCTGACCCTTGCAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCCTCCAGTGAGGAAAATAAACTTCCCTGCTGCTGACCCTTGCAG  487

seq1  TACAGCCAGGAGCTGCCTCTGCCCTTTGCTGCACTTCCTGTCCCTTTCTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCAGGAGCTGCCTCTGCCCTTTGCTGCACTTCCTGTCCCTTTCTC  537

seq1  AGTGACAGGGACCCAGCCCAGCCTTACCTCATCCCGATCCTGCTTGCCTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAGGGACCCAGCCCAGCCTTACCTCATCCCGATCCTGCTTGCCTG  587

seq1  CTTTCCTGCTGCATCCGGCTCCTACTCACCTAGCTTTGGCCACATTTCTC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGCTGCATCCGGCTCCTACTCACCTAGCTTTGGCCACATTTCTC  637

seq1  TTCTGTGTATGGCCCCCACTCATCCTCTGTGCTGCGAACTTAGGGGTGGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTATGGCCCCCACTCATCCTCTGTGCTGCGAACTTAGGGGTGGG  687

seq1  GGTGGGGGTGTTATCTGAAGGCTTGGTGGCTTTGGTCAAAAGCGTCAATA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGTGTTATCTGAAGGCTTGGTGGCTTTGGTCAAAAGCGTCAATA  737

seq1  AAAAAATAAATGAACAGGTGACTAGAGAGATGGCTCAGCTATTCAAAACA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAATGAACAGGTGACTAGAGAGATGGCTCAGCTATTCAAAACA  787

seq1  TTTGTTGCTCTTATAGAGGTCAAGGGTTTGGTTCTCAGTACCCCCCTGGC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGCTCTTATAGAGGTCAAGGGTTTGGTTCTCAGTACCCCCCTGGC  837

seq1  CGCTCACAACTGTCTCACAGATGATCTGACTCTCCTGTTCTCTATAGGTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCACAACTGTCTCACAGATGATCTGACTCTCCTGTTCTCTATAGGTG  887

seq1  GTTGTACATGAAGTGCATAGAAATACATGCAGGCAAAACACTCATATACA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTACATGAAGTGCATAGAAATACATGCAGGCAAAACACTCATATACA  937

seq1  TAATCAAAAAGTAAATCTTTTTTTTTTTGTTTTGTTTTTCGAGATAGGGT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAAAAGTAAATCTTTTTTTTTTTGTTTTGTTTTTCGAGATAGGGT  987

seq1  TTCTCTTTGTAGTCCTGGCTGTCCTGGAATTCATTTTGTAGCCCAGGCTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTGTAGTCCTGGCTGTCCTGGAATTCATTTTGTAGCCCAGGCTG  1037

seq1  GCCCCAGACTCACAAAGTTCCACCTGCCTCTACCTCCCAAGCGCTGGAAT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGACTCACAAAGTTCCACCTGCCTCTACCTCCCAAGCGCTGGAAT  1087

seq1  TC  1094
      ||
seq2  TC  1089

seq1: chr12_21020380_21020925
seq2: B6Ng01-223G10.g_528_1078

seq1  AGAAAATATGTCAGATTCTGTCTTTGGTAGACAATCTGAATATGATAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATATGTCAGATTCTGTCTTTGGTAGACAATCTGAATATGATAAAA  50

seq1  GTTTGCAATGAATTGGTTTTCTAATTTTACTGGGAACTTCCCCAAGCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAATGAATTGGTTTTCTAATTTTACTGGGAACTTCCCCAAGCTCA  100

seq1  CACTGTAGAAAATCTTTATGGGTACTAGGAATTTGGAAATTCTTTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAGAAAATCTTTATGGGTACTAGGAATTTGGAAATTCTTTTGTTT  150

seq1  GTCCTGGTTCACAGTCAAATGTGGTATAATTCATGGTATAGGAAAAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGTTCACAGTCAAATGTGGTATAATTCATGGTATAGGAAAAATTA  200

seq1  TGAAAGCAATTAGTTTTATAAAGCTCTGAGGTGTTCCATTTTCCTCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCAATTAGTTTTATAAAGCTCTGAGGTGTTCCATTTTCCTCATAT  250

seq1  AGATGAAATACATCATATAAATATCCCATATAAAAAGGATGTTATAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAATACATCATATAAATATCCCATATAAAAAGGATGTTATAAATA  300

seq1  TGAGCCATGTAATAA-CCATCACAGATATCTCGAAAGATGCAAAACAACC  349
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGAGCCATGTAATAACCCATCACAGATATCTCGAAAGATGCAAAACAACC  350

seq1  CATAATGAGGGAGAACACCATGAACATATGAAGTGATAAAACCAGATGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGAGGGAGAACACCATGAACATATGAAGTGATAAAACCAGATGAT  400

seq1  CTGGTCCACC-TTTATCAGTAGACCAATTTGTAAACTTTATTCATCTTGA  448
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCACCTTTTATCAGTAGACCAATTTGTAAACTTTATTCATCTTGA  450

seq1  TGAAATGACTGAACAGGGAAATTAATGTAGT-AAACATATCACATGT-GC  496
      ||||||||||||||||||||||||||||||| |||||| |||||||| ||
seq2  TGAAATGACTGAACAGGGAAATTAATGTAGTAAAACATTTCACATGTGGC  500

seq1  CAATTTTCATTGCAGGTATGTAAGTAATCA-TAGTGGAGAGAAACTCTAT  545
      ||||||||||||||||||||||||  |||| |||||||||||||||||||
seq2  CAATTTTCATTGCAGGTATGTAAGGTATCATTAGTGGAGAGAAACTCTAT  550

seq1  G  546
      |
seq2  G  551