BAC Information

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BAC

Clone NameB6Ng01-223J05
Chromosome12 (Build37)
Map Location 116,882,520 - 116,883,536
singlet/doubletsinglet
Overlap geneIgh
Upstream geneIghv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69
Downstream geneIghv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, Ptprn2, LOC627375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223J05.bB6Ng01-223J05.g
ACCGA038281GA038282
length1,0721,016
definitionB6Ng01-223J05.b B6Ng01-223J05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgatcaaaaattcaggtgacagcagatgctgg
cgtggatgtggagaaagaggaacactcctccattgttggtgggattgcag
gcttgtacaaccactctggagatcagtctggcggttcctcagaaaactgg
atatagtactaccggaggatccagcaatacctctcctgggcatatatcca
gaagatgccccaactggtaagaaggacacatgctccactatgttcatagc
agccttatttataatagccagaagctggaaggaacccagatgcccctcaa
cagaggaatggatacagaagatgtggtacatctacacaatggagtactac
tcagctattaaaaagaatgaatttatgaaattcctggccaaatggatgga
cctggagggcatcatcctgagtgaggtaacacattcacaaaggaactcac
acaatatgtactcactgataagtggatattagcccaaaacctaagatacc
caagatataagatacaatttcctaaacacatgaaactcaagaaaaatgaa
gactgaagtgtgaacactatgcccctccttagaagtgggagcaaaacacc
cttggaaggagttacagagacaaagtttggagttgagataaaaggatgga
ccatgtagacactaccatatccggggatccatcccataatcagcttccaa
atgctgacaccattgcatacactagcaagattatgctgaaaggaccctga
tatagctgtctcttgtcagagtatgcctgggcctagcaaacatagaagtg
gatgctcacagtcggctattggatggatcacatggcccccaatgaaggag
ctagagaaagtaccaaagaagctaaagggatctgcaaccctataaggttg
gaacaacattattgaactaaccagtaccccggagcttcttggactctagc
tgcatatgcatcaaaagatgggcctagtcggcatcactggaaagagaggc
cattggacacgcaactttattatgccccagtacaggggaacgccaggcca
taaagggagttgggcggttagg
gaattctttgttcagttctgagccccattttttaatggtccaccttcttg
agttctttatatatattggatattagtcccctatctgatttaggataggt
aaagatcctttcccaatcttttgctggtctttttttcttattgacggttt
cttttgctttgcagaagctttgcaaaaagttacaattttaattctatgac
aaaatgttgagaaataatgaacaattaatagttgcctagtatacatttgg
gaatatctatgtgttgatgaagtaattttatgtttatattgccataacat
ttatggatttgaagataccatttattaatcaaaaatgataaattcaagga
aaatcaatgaaaaactagtgatattcagacaagacttgcagttttgtaat
tagtattgtctcagagacctaggtctggtcataatctagggttgagatac
atgtttgcaaaaagctgcgtagtaagcacaggggtgaaacctgtgtttta
tttcgactcagatatatttgaacagaggtgcctacatgtgtagacagtgt
agataccaggagacataagttattaactgaacatctcagtgccagtcaca
ggataactcactgtgagttaatggttagagagtccccatagatgccacaa
aagtatgaggtattgaagttgttctaagtttcctaataactccataattg
gaactcatttctgagaaagaatttaaatacttaaaagattataagaccca
aaggaatgggatgactccaaggaaactatcttccagacataacaggactc
atgcacatatgaactacagagactgtaacagcatgcacaggtatgcacag
actcaatcccaaatggagacacagttgttaagagaagtacatggccacaa
gttttcacgtttaaacaagtaatttctgaattgaccttcacgtgaaaagg
aaaattagcttttgtccaatgagaatcattggctcattaaccacacttaa
ggaaaacacattgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_116882520_116883536
seq2: B6Ng01-223J05.g_66_1081

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGTCCACCTTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGTCCACCTTCTTG  50

seq1  AGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGT  100

seq1  AAAGATCCTTTCCCAATCTTTTGCTGGTCTTTTTTTCTTATTGACGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCCTTTCCCAATCTTTTGCTGGTCTTTTTTTCTTATTGACGGTTT  150

seq1  CTTTTGCTTTGCAGAAGCTTTGCAAAAAGTTACAATTTTAATTCTATGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTTTGCAGAAGCTTTGCAAAAAGTTACAATTTTAATTCTATGAC  200

seq1  AAAATGTTGAGAAATAATGAACAATTAATAGTTGCCTAGTATACATTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTGAGAAATAATGAACAATTAATAGTTGCCTAGTATACATTTGG  250

seq1  GAATATCTATGTGTTGATGAAGTAATTTTATGTTTATATTGCCATAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCTATGTGTTGATGAAGTAATTTTATGTTTATATTGCCATAACAT  300

seq1  TTATGGATTTGAAGATACCATTTATTAATCAAAAATGATAAATTCAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGATTTGAAGATACCATTTATTAATCAAAAATGATAAATTCAAGGA  350

seq1  AAATCAATGAAAAACTAGTGATATTCAGACAAGACTTGCAGTTTTGTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATGAAAAACTAGTGATATTCAGACAAGACTTGCAGTTTTGTAAT  400

seq1  TAGTATTGTCTCAGAGACCTAGGTCTGGTCATAATCTAGGGTTGAGATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTGTCTCAGAGACCTAGGTCTGGTCATAATCTAGGGTTGAGATAC  450

seq1  ATGTTTGCAAAAAGCTGCGTAGTAAGCACAGGGGTGAAACCTGTGTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGCAAAAAGCTGCGTAGTAAGCACAGGGGTGAAACCTGTGTTTTA  500

seq1  TTTCGACTCAGATATATTTGAACAGAGGTGCCTACATGTGTAGACAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGACTCAGATATATTTGAACAGAGGTGCCTACATGTGTAGACAGTGT  550

seq1  AGATACCAGGAGACATAAGTTATTAACTGAACATCTCAGTGCCAGTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCAGGAGACATAAGTTATTAACTGAACATCTCAGTGCCAGTCACA  600

seq1  GGATAACTCACTGTGAGTTAATGGTTAGAGAGTCCCCATAGATGCCACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACTCACTGTGAGTTAATGGTTAGAGAGTCCCCATAGATGCCACAA  650

seq1  AAGTATGAGGTATTGAAGTTGTTCTAAGTTTCCTAATAACTCCATAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGAGGTATTGAAGTTGTTCTAAGTTTCCTAATAACTCCATAATTG  700

seq1  GAACTCATTTCTGAGAAAGAATTTAAATACTTAAAAGATTATAAGACCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCATTTCTGAGAAAGAATTTAAATACTTAAAAGATTATAAGACCCA  750

seq1  AAGGAATGGGATGACTCCAAGGAAACTATCTTCCAGACATAACAGGACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATGGGATGACTCCAAGGAAACTATCTTCCAGACATAACAGGACTC  800

seq1  ATGCACATATGAACTACAGAGACTGTAACAGCATGCACAGGTATGCACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATATGAACTACAGAGACTGTAACAGCATGCACAGGTATGCACAG  850

seq1  ACTCAAT-CCAAATGGAGACACAG-TGTTAAGAGAAGTACATGGCCACAA  898
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  ACTCAATCCCAAATGGAGACACAGTTGTTAAGAGAAGTACATGGCCACAA  900

seq1  GTTTTCACGTTTAAACAAGTAATTTCTGAAATTGACCTTCACGTGAAAAG  948
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTTTTCACGTTTAAACAAGTAATTTCTG-AATTGACCTTCACGTGAAAAG  949

seq1  GAAAAATTAGC-TTTGTCCAATGGAGAATCATTGGGCTCATTAACCACAC  997
      | ||||||||| |||||||||| |||||||||| ||||||||||||||||
seq2  G-AAAATTAGCTTTTGTCCAAT-GAGAATCATT-GGCTCATTAACCACAC  996

seq1  TTAAGGGAAAACACA-TGTCT  1017
      |||| |||||||||| |||||
seq2  TTAA-GGAAAACACATTGTCT  1016