BAC Information

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BAC

Clone NameB6Ng01-223N17
Chromosome12 (Build37)
Map Location 118,902,445 - 118,903,573
singlet/doubletsinglet
Overlap geneRapgef5
Upstream genePtprn2, LOC432713, LOC100042461, A930023M06Rik
Downstream geneCdca7l, Dnahc11, Sp4, LOC100042993, LOC668611
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223N17.bB6Ng01-223N17.g
ACCGA038485GA038486
length1,2071,131
definitionB6Ng01-223N17.b B6Ng01-223N17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgatcgtgagcccactgtcgtacttctctggctgtgaaatga
gttccttggtcagaagcaatactgtgtggaataccatgacgatagatgag
gcattctgtcagtccgtgaatggtggttttagcagaggcattacgtgcag
gaaaggcaaatccataaccagaataagtatctactccagtaagaacaaaa
cgctgtcctttccacgaaggaagtggtccaatgtagtcaacctgccacca
ggttgctggctggtcacctcgaggaatggtgccatatctggggctcagtg
ttggtttctgctgttggcagatctggcaatcagcagcagctgtagccagg
tcagccttggtgagtggaagcccatgttgctgagcccaagcataacctcc
atctcgaccaccatggccactttgttcatgtgcccattgagcaatgacag
ggatggctggggagagaggctgattgtccacagaacgggtcatcttatcc
acttgattattgaactcctcctcagctgaagtcaccttttggtgagcatt
tacatgggacacaaatatcttcacatcctttgcccatttggagagatcta
tccacatacttcttccccagatgtctttctcaccaattttccaattgtga
tctttccaagtccctgaccatccagccaatccattggctacagcccatga
gtcagtgtataatcgtacatctggccatttcttcttgcaaacaaactgta
ataccatgtgtactgcccgaagttctgcccactgtgaagatttcccttca
cctgtgtctttcaaggttgtcccagaaaggggttgtaatgctgcagctgt
ccacttctgggtggtgcctgcataacgtgcagagccatcagtaaaccagg
ctctagtcttctcctcttcggtcagtcgatcatagggaacaccccatgag
gctataggcacatgtttggcagcagatggcattgtaacaggagtaagaaa
acccataggcatttggagccacctcttcatgtaactttgcttgtgcttca
ggacctgcttctggccgatcacgtataataccacttccattgaataatag
aactgctgctgtgcgcgttccactttatggaacttggcaagatctgaata
gataccccaggcttcaatgagtggatgttcagagactcgcgcaatgaggg
tgaactc
gaattctacagacgtcaaaggggctccttgtttaaggattgctgagaagt
ggtttagaatatccgactgctgtcacccatagtttacatacccaaacttt
gttcctatgactttgttttatttaaagagtagggctacatgtagggtgga
aatgtttttactctatataaaagggttttgttgttgttgttatacagttt
atattcaaatttgtactatacatctagataagaataattccaaatcccat
cccattaaaagttttccattaaaatgatttaacccccaaactatttaaat
atgaatagaaatttctagcatcattgtttatattgaacgccgaaaatcgg
atgtaatagtgaattctcaagaccttaagctgcccatttataaaacagaa
gtcaccacactgaaatcacgttacttttcttgataacaaaatcttgagtt
tgggtttgggttagtattaaagctatcttttcatagaaaagggggcttcc
ttgagtaaattattttggtccatttcgaatcagtgtccatctggtctcaa
aggaacaccaatggtaggagatggtaatttttgctcacaagaagttttta
atctagattttaaatctaaaaatatttgagcatatagctttaaacataag
gaacacagctctttcaagacagtgtttaatgaagtctcagtaattccact
cgagaatgggagccattacccagcaaacacagttttcagagtcattttct
tccacccatttaggaacaaggcttacaagcttggttcactctgtgtgctc
ctggaattctagactttgtttttctccctccaaatggcagctagactacc
agtgtgtctcaaggctgcttcgtgctgtctggtggagccatctgctcatt
aactgttgttttgggttctcagacgaagcccattgcaaatcctgccctcc
cctctcccgctttaaattagctttcagtgttttttaagaaaagagacttg
ttatatgtgggtttttttttcctgaatatgttcactttttattttgaagc
cgcaagatgagaaagtgatccctgctcagtctggattcttcaactcttgt
gtcaaaggatcttgtttcgtactggtacaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_118902445_118903573
seq2: B6Ng01-223N17.g_69_1199

seq1  GAATTCTACAGACGTCAAAGGGGCTCCTTGTTTAAGGATTGCTGAGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGACGTCAAAGGGGCTCCTTGTTTAAGGATTGCTGAGAAGT  50

seq1  GGTTTAGAATATCCGACTGCTGTCACCCATAGTTTACATACCCAAACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGAATATCCGACTGCTGTCACCCATAGTTTACATACCCAAACTTT  100

seq1  GTTCCTATGACTTTGTTTTATTTAAAGAGTAGGGCTACATGTAGGGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTATGACTTTGTTTTATTTAAAGAGTAGGGCTACATGTAGGGTGGA  150

seq1  AATGTTTTTACTCTATATAAAAGGGTTTTGTTGTTGTTGTTATACAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTTACTCTATATAAAAGGGTTTTGTTGTTGTTGTTATACAGTTT  200

seq1  ATATTCAAATTTGTACTATACATCTAGATAAGAATAATTCCAAATCCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAAATTTGTACTATACATCTAGATAAGAATAATTCCAAATCCCAT  250

seq1  CCCATTAAAAGTTTTCCATTAAAATGATTTAACCCCCAAACTATTTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTAAAAGTTTTCCATTAAAATGATTTAACCCCCAAACTATTTAAAT  300

seq1  ATGAATAGAAATTTCTAGCATCATTGTTTATATTGAACGCCGAAAATCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAGAAATTTCTAGCATCATTGTTTATATTGAACGCCGAAAATCGG  350

seq1  ATGTAATAGTGAATTCTCAAGACCTTAAGCTGCCCATTTATAAAACAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATAGTGAATTCTCAAGACCTTAAGCTGCCCATTTATAAAACAGAA  400

seq1  GTCACCACACTGAAATCACGTTACTTTTCTTGATAACAAAATCTTGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCACACTGAAATCACGTTACTTTTCTTGATAACAAAATCTTGAGTT  450

seq1  TGGGTTTGGGTTAGTATTAAAGCTATCTTTTCATAGAAAAGGGGGCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTGGGTTAGTATTAAAGCTATCTTTTCATAGAAAAGGGGGCTTCC  500

seq1  TTGAGTAAATTATTTTGGTCCATTTCGAATCAGTGTCCATCTGGTCTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTAAATTATTTTGGTCCATTTCGAATCAGTGTCCATCTGGTCTCAA  550

seq1  AGGAACACCAATGGTAGGAGATGGTAATTTTTGCTCACAAGAAGTTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACACCAATGGTAGGAGATGGTAATTTTTGCTCACAAGAAGTTTTTA  600

seq1  ATCTAGATTTTAAATCTAAAAATATTTGAGCATATAGCTTTAAACATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGATTTTAAATCTAAAAATATTTGAGCATATAGCTTTAAACATAAG  650

seq1  GAACACAGCTCTTTCAAGACAGTGTTTAATGAAGTCTCAGTAATTCCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAGCTCTTTCAAGACAGTGTTTAATGAAGTCTCAGTAATTCCACT  700

seq1  CGAGAATGGGAGCCATTACCCAGCAAACACAGTTTTCAGAGTCATTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAATGGGAGCCATTACCCAGCAAACACAGTTTTCAGAGTCATTTTCT  750

seq1  TCCACCCATTTAGGAACAAGGCTTACAAGCTTGGTTCACTCTGTGTGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCATTTAGGAACAAGGCTTACAAGCTTGGTTCACTCTGTGTGCTC  800

seq1  CTGGAATTCTAGACTTTGTTTTTCTCCCTCCAAATGGCAGCTAGACTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTCTAGACTTTGTTTTTCTCCCTCCAAATGGCAGCTAGACTACC  850

seq1  AGTGTGTCTCAGGGCTGCTTCGTGCTGTCTGGTGGAGCCATCTGCTCATT  900
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTCTCAAGGCTGCTTCGTGCTGTCTGGTGGAGCCATCTGCTCATT  900

seq1  AACTGTTGTTTTGGGTTCTCAGACGAAGCCCATTGCAAATCCTGCCCTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTGTTTTGGGTTCTCAGACGAAGCCCATTGCAAATCCTGCCCTCC  950

seq1  CCTCTCCCGCCTTTAAATTAGC-TTCAGTG-TTTTTAAGAAAGAGAACTT  998
      ||||||||| |||||||||||| ||||||| ||||||||||| |||   |
seq2  CCTCTCCCG-CTTTAAATTAGCTTTCAGTGTTTTTTAAGAAA-AGAGACT  998

seq1  TGTTATTATGTGGGTTTTTTTT--CTGAATATGTTCAC-TTTTATTTTGA  1045
      ||||| ||||||||||||||||  |||||||||||||| |||||||||||
seq2  TGTTA-TATGTGGGTTTTTTTTTCCTGAATATGTTCACTTTTTATTTTGA  1047

seq1  AAGCGC-AGATGAGAAAGTGAATCCTGGCTCAGTTTGATTTCTCAAACTC  1094
      |  ||| ||||||||||||| ||||  ||||||| ||  ||||  |||||
seq2  AGCCGCAAGATGAGAAAGTG-ATCCCTGCTCAGTCTGGATTCTTCAACTC  1096

seq1  TTGTTGTCAAAGAATCTTGTTTCCGTCT-GTACAAG  1129
      ||| |||||||| ||||||||||   || |||||||
seq2  TTG-TGTCAAAGGATCTTGTTTCGTACTGGTACAAG  1131