BAC Information

Click to search

BAC

Clone NameB6Ng01-226D17
Chromosome12 (Build37)
Map Location 28,691,881 - 28,774,956
singlet/doubletdoublet
Overlap genenone
Upstream geneSox11, LOC100043009, LOC669327
Downstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226D17.bB6Ng01-226D17.g
ACCGA040226GA040227
length7261,109
definitionB6Ng01-226D17.b B6Ng01-226D17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,774,231 - 28,774,956)(28,691,881 - 28,692,992)
sequence
gaattcattgaaagactgcagggtgcatgaaggaatcagaaataaagtgc
tataaaaataatatgctattatgttaagatctcagttaagttttcagatg
agattagaaaatagattctcttaattttatggaagtcatttaattatgtt
gctctccaaatgcctttataagagcaaagactttgtgaattagattgctt
tattataaaattcaaaaggtagtgtatctgttccttccttctttcctgta
gtcagacgtagaggaagcccaggaagctagactggacaggttctgcctga
cctgaactttgcattaaataaaatgatctacatctaagttctgttcttta
ggcagggtaacaggatatatttgctagatggaacttaaaaaacatgtagg
atttactgttgtgaaaactttaatctaaagcagaacacacaagatttctg
ggctgctttcaaaatagtttttttctttcattgttacacaaaattggatt
tactaagacaacacacatcatcatgttcatcctttacaagctaagctgtc
tatcacttctagtttagatttcttcttccccttttaagttactttcctgg
gagttcagatgtttctacttttcttagtgtgtgtgtgcgtgtgcgtgagt
gtgtgtgtgagcgtgtgcgtgtgcgagcgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgagagacagaga

gaattcactgttctcagaagaatacacatagagtttatatagtataaaga
agtctaagagcctcaactgaggcagcagccacctggtgtcatgaagttga
tgatatgatgtgttcctatacatgtggttaattttaatgtatgggaaggc
tggttccttagtcttagacattttctcaaagaggatttatgtttgggagt
cctactgacagggggtctccagtctagtaatgtgagagccactgagatga
aagggatagaaagaatgggtggtgacctgtaattaggtcaggaattactt
tgggagtaatgatttggttactgcagtgtgaggtcaggtataccctagca
ctagacaggactgaaggatcatttctatggaagaaaagggctgatatatt
gagggtgtgcatgaccactccgtgcctgagcagtgtactaggcatgcccc
tacagctcatctgcaagactcccaatacaggtatttagtggaaacagcta
agccgagtaagcattatttatatggaaacactagccaatctaagaataag
gaacaatgtagtggaatgaatgaaggagactctgctattcatcctttgat
ataactgccttcagcgtgctgacaaggggctatttgtcctctctctatgg
atagcaaagcacgcagcagagactgcccttacctcccatgaagatcagag
tgccccattagatgtctgcagaaataagcttcactataaattccaaacaa
ttctgtaacaagcagactgactcgccaaggaagtgactgcactcccttcc
tgtctgtccctccttcctgccacaatgtaagatcaatggctggacctttc
aaggcccatcaataaaccacaaatatggaaatgtgatgtcatatatcata
atgtctgggtctctggaaacttcctggtgccaccaccactggcctgcccg
tctgacagcagtatcaccatgggaggcagcctttccctttcattcacagt
tgtgagtgactttaaagggaaagagcatgcaccatgggagggtggagtga
agcacagcatgtgtagagtctgagaccctaagagactagcaattactgtg
atcagcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_28774231_28774956
seq2: B6Ng01-226D17.b_46_771 (reverse)

seq1  TCTCTCTCTCTCACACACACACACACACACACACACACACACACACACGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCTCTCACACACACACACACACACACACACACACACACACACGC  50

seq1  TCGCACACGCACACGCTCACACACACACTCACGCACACGCACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCACACGCACACGCTCACACACACACTCACGCACACGCACACACACAC  100

seq1  TAAGAAAAGTAGAAACATCTGAACTCCCAGGAAAGTAACTTAAAAGGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAGTAGAAACATCTGAACTCCCAGGAAAGTAACTTAAAAGGGGA  150

seq1  AGAAGAAATCTAAACTAGAAGTGATAGACAGCTTAGCTTGTAAAGGATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAATCTAAACTAGAAGTGATAGACAGCTTAGCTTGTAAAGGATGA  200

seq1  ACATGATGATGTGTGTTGTCTTAGTAAATCCAATTTTGTGTAACAATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATGATGTGTGTTGTCTTAGTAAATCCAATTTTGTGTAACAATGAA  250

seq1  AGAAAAAAACTATTTTGAAAGCAGCCCAGAAATCTTGTGTGTTCTGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAACTATTTTGAAAGCAGCCCAGAAATCTTGTGTGTTCTGCTTT  300

seq1  AGATTAAAGTTTTCACAACAGTAAATCCTACATGTTTTTTAAGTTCCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAAGTTTTCACAACAGTAAATCCTACATGTTTTTTAAGTTCCATC  350

seq1  TAGCAAATATATCCTGTTACCCTGCCTAAAGAACAGAACTTAGATGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAATATATCCTGTTACCCTGCCTAAAGAACAGAACTTAGATGTAGA  400

seq1  TCATTTTATTTAATGCAAAGTTCAGGTCAGGCAGAACCTGTCCAGTCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTATTTAATGCAAAGTTCAGGTCAGGCAGAACCTGTCCAGTCTAG  450

seq1  CTTCCTGGGCTTCCTCTACGTCTGACTACAGGAAAGAAGGAAGGAACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGGCTTCCTCTACGTCTGACTACAGGAAAGAAGGAAGGAACAGA  500

seq1  TACACTACCTTTTGAATTTTATAATAAAGCAATCTAATTCACAAAGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTACCTTTTGAATTTTATAATAAAGCAATCTAATTCACAAAGTCTT  550

seq1  TGCTCTTATAAAGGCATTTGGAGAGCAACATAATTAAATGACTTCCATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTATAAAGGCATTTGGAGAGCAACATAATTAAATGACTTCCATAA  600

seq1  AATTAAGAGAATCTATTTTCTAATCTCATCTGAAAACTTAACTGAGATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGAGAATCTATTTTCTAATCTCATCTGAAAACTTAACTGAGATCT  650

seq1  TAACATAATAGCATATTATTTTTATAGCACTTTATTTCTGATTCCTTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAATAGCATATTATTTTTATAGCACTTTATTTCTGATTCCTTCAT  700

seq1  GCACCCTGCAGTCTTTCAATGAATTC  726
      ||||||||||||||||||||||||||
seq2  GCACCCTGCAGTCTTTCAATGAATTC  726


seq1: chr12_28691881_28692992
seq2: B6Ng01-226D17.g_65_1173

seq1  GAATTCACTGTTCTCAGAAGAATACACATAGAGTTTATATAGTATAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTTCTCAGAAGAATACACATAGAGTTTATATAGTATAAAGA  50

seq1  AGTCTAAGAGCCTCAACTGAGGCAGCAGCCACCTGGTGTCATGAAGTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAGAGCCTCAACTGAGGCAGCAGCCACCTGGTGTCATGAAGTTGA  100

seq1  TGATATGATGTGTTCCTATACATGTGGTTAATTTTAATGTATGGGAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGATGTGTTCCTATACATGTGGTTAATTTTAATGTATGGGAAGGC  150

seq1  TGGTTCCTTAGTCTTAGACATTTTCTCAAAGAGGATTTATGTTTGGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCTTAGTCTTAGACATTTTCTCAAAGAGGATTTATGTTTGGGAGT  200

seq1  CCTACTGACAGGGGGTCTCCAGTCTAGTAATGTGAGAGCCACTGAGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGACAGGGGGTCTCCAGTCTAGTAATGTGAGAGCCACTGAGATGA  250

seq1  AAGGGATAGAAAGAATGGGTGGTGACCTGTAATTAGGTCAGGAATTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATAGAAAGAATGGGTGGTGACCTGTAATTAGGTCAGGAATTACTT  300

seq1  TGGGAGTAATGATTTGGTTACTGCAGTGTGAGGTCAGGTATACCCTAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTAATGATTTGGTTACTGCAGTGTGAGGTCAGGTATACCCTAGCA  350

seq1  CTAGACAGGACTGAAGGATCATTTCTATGGAAGAAAAGGGCTGATATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACAGGACTGAAGGATCATTTCTATGGAAGAAAAGGGCTGATATATT  400

seq1  GAGGGTGTGCATGACCACTCCGTGCCTGAGCAGTGTACTAGGCATGCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGTGCATGACCACTCCGTGCCTGAGCAGTGTACTAGGCATGCCCC  450

seq1  TACAGCTCATCTGCAAGACTCCCAATACAGGTATTTAGTGGAAACAGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTCATCTGCAAGACTCCCAATACAGGTATTTAGTGGAAACAGCTA  500

seq1  AGCCGAGTAAGCATTATTTATATGGAAACACTAGCCAATCTAAGAATAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGAGTAAGCATTATTTATATGGAAACACTAGCCAATCTAAGAATAAG  550

seq1  GAACAATGTAGTGGAATGAATGAAGGAGACTCTGCTATTCATCCTTTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATGTAGTGGAATGAATGAAGGAGACTCTGCTATTCATCCTTTGAT  600

seq1  ATAACTGCCTTCAGCGTGCTGACAAGGGGCTATTTGTCCTCTCTCTATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGCCTTCAGCGTGCTGACAAGGGGCTATTTGTCCTCTCTCTATGG  650

seq1  ATAGCAAAGCACGCAGCAGAGACTGCCCTTACCTCCCATGAAGATCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAAGCACGCAGCAGAGACTGCCCTTACCTCCCATGAAGATCAGAG  700

seq1  TGCCCCATTAGATGTCTGCAGAAATAAGCTTCACTATAAATTCCAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCATTAGATGTCTGCAGAAATAAGCTTCACTATAAATTCCAAACAA  750

seq1  TTCTGTAACAAGCAGACTGACTCGCCAAGGAAGTGACTGCACTCCCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAACAAGCAGACTGACTCGCCAAGGAAGTGACTGCACTCCCTTCC  800

seq1  TGTCTGTCCCTCCTTCCTGCCACAATGTAAGATCAATGGCTGGACC-TTC  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTCTGTCCCTCCTTCCTGCCACAATGTAAGATCAATGGCTGGACCTTTC  850

seq1  AAGGCCCATCAATAAACCACAAATATGGAAATGTGATGTCATATATCATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCATCAATAAACCACAAATATGGAAATGTGATGTCATATATCATA  900

seq1  ATGTCTGGGTCTCTGGAAACTTCCTGGTGCCACCA-CACTGGCCTGCCCG  948
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATGTCTGGGTCTCTGGAAACTTCCTGGTGCCACCACCACTGGCCTGCCCG  950

seq1  TCTGACAGCAGTATCACCATGGGAGGCAGCCTTTCCC-TTCATTCACAGT  997
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCTGACAGCAGTATCACCATGGGAGGCAGCCTTTCCCTTTCATTCACAGT  1000

seq1  TGTGAGTGACTTTAAAGGGAAAGAGCATGCACCATGGGAGGGTGGAGTGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGACTTTAAAGGGAAAGAGCATGCACCATGGGAGGGTGGAGTGA  1050

seq1  AGCACAGCATGTGTAAGAGGTCTGAGAACCCCAAAGAAGAACTAGGCATT  1097
      |||||||||||||| ||| ||||||||  ||| ||||   |||||  |||
seq2  AGCACAGCATGTGT-AGA-GTCTGAGA--CCCTAAGA--GACTAGCAATT  1094

seq1  ACTGTGATCAGCACT  1112
      |||||||||||||||
seq2  ACTGTGATCAGCACT  1109


| Home | SequenceCutter | Blast | Download |