BAC Information

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BAC

Clone NameB6Ng01-226I11
Chromosome12 (Build37)
Map Location 34,499,736 - 34,500,862
singlet/doubletsinglet
Overlap genenone
Upstream genePbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801
Downstream geneLOC668806, Ferd3l, Twist1, Hdac9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226I11.bB6Ng01-226I11.g
ACCGA040447GA040448
length1,2781,133
definitionB6Ng01-226I11.b B6Ng01-226I11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacatcatccaacccagtccctctcatctccccatccttccatat
ccgccctccacccttgcaacctccccccaaaagaaaacacccaataaaac
caacaccaacaccaacaacaaaacacatcttgccatgaaggctgcagtca
cagtgtgtcacacagtctatataacctttagcccaaacagctttacttgc
caatgttcattgcaacaagtcattcatttggcttctgctacactctcaaa
gctggatgctcacaactcctttggacatcctgctgttgcccggtgtcatg
gagatcctgcagctttagtgacacttcacaagctccagcagttcatagat
ggggtagatgttggggttggccaactcaaagccctgaacctaggtggtag
ctgagttggtcaacctgccagctctcctgtgcccatgacaccaggcccag
ctctactgtgctactcagtcaaggtgcagtgtcccgtcttccaagtgcta
cattcagcacggggttggggcattcccttgagtgctgccggggatgtgga
gagaatcaactctacacagtcctgggacatcagcatccacatgacttttg
gtggtaacatgggccacagcaatcgacatagacccctactgctgcagggc
cacagacacagacatgacctcagaggcagcaagagcagggccatcaccat
ggccttagatggcaatgcaggctacttacctcaggctgttccttatcacc
ctttaggctccagttctgcctcccttcatagttcacaaaccattctgctt
ctttctctcccaacactccagcacatacttactcaccatagaggcaccca
cctgcctacacctcgggggtgtcttcttctctgtatcaggtgaccaggag
caggcaggagagcccccagccatcagaggcgagcagagtgagacatggaa
ggaagagggtattcataaactagggcatcagatataacagaagatggagg
agaagaaggggaggagactaatggtttaccagcaagggagataggaatgc
agagagcactgagcccgtgaggaagggaagacttcctgcaggaaccccca
ctacgagacacaggccatagcttctttgctgccaggaactcctcaattgg
tgccagggaacatcccctaaaccttgtctttcctgaagagggttggacct
cctaatacagctcagctaacctgactcaccacatacgggaaggctccgtg
tccatgattctctctatctagcgacatg
gaattctgacaaaactgtagacactgttgggttgagggctctgctctgcc
ttgtcaaggtgggttagtttttccaagttcctcctccataggaaaatctc
tcagcccttctgagtctgggcagccaaaggtctatgctgtcttgtgcagc
agctgaagatgtaacactgccctatgtgagactgaagatgacttcagccc
tcaacaaagccacgaaaaccacaatgggatccaagggtaaccacccaggt
agctgataggtctctgtcagtataatcaatacagagatcatctggtttat
agttcctgctatactttatctttctcagatctctgatgacgttaacagct
aattctagatttttcaggttagcagccgctccctggtcatttatgaaagc
caggtcttgcttttctagagctattaggttgcctggtgagaaaggtaaga
gatttcacagaaaggtttgccttgctaacaggtttcatattaaaagataa
agaggtttcatatataactttttactattgattcctttaaaagaactttc
tttaaaatgactgcctcagtaattggccacttgtttttagtgataaataa
ttggatgaaaaccatttaagatttatataaactgtgaaggtctaaaggta
atttaaggtactaaggtgtagaaatgcaagttgtaaacacctgagaatgt
tgaagcttaagtatggtatgaggtctaaagaaagtggtttaaggtaagta
aattcaagttataaacgtataagaagatgatttagaataagacataactg
attactttcctgcctgtatgctattgctatcctgaagctttcaaggtttg
ggagtttaaacattcaccaatggagttctttgaagctggttacacactgt
gactattctttagtcacaagctcaaaattataaatttctctctcggttgt
tctttgaaaatagaaacataagatgcatcttattatgctaaaacaaccca
tgtacaagtctatgaatcaggcttctgaagaagagaaaagagtggtttcg
tgctttttacccaaagataggctttcactctgttctcaaggcatggagtc
taactcagctgtttacagaacatgtagattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_34499736_34500862
seq2: B6Ng01-226I11.g_66_1198

seq1  GAATTCTGACAAAACTGTAGACACTGTTGGGTTGAGGGCTCTGCTCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACAAAACTGTAGACACTGTTGGGTTGAGGGCTCTGCTCTGCC  50

seq1  TTGTCAAGGTGGGTTAGTTTTTCCAAGTTCCTCCTCCATAGGAAAATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAGGTGGGTTAGTTTTTCCAAGTTCCTCCTCCATAGGAAAATCTC  100

seq1  TCAGCCCTTCTGAGTCTGGGCAGCCAAAGGTCTATGCTGTCTTGTGCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCTTCTGAGTCTGGGCAGCCAAAGGTCTATGCTGTCTTGTGCAGC  150

seq1  AGCTGAAGATGTAACACTGCCCTATGTGAGACTGAAGATGACTTCAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAGATGTAACACTGCCCTATGTGAGACTGAAGATGACTTCAGCCC  200

seq1  TCAACAAAGCCACGAAAACCACAATGGGATCCAAGGGTAACCACCCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAAGCCACGAAAACCACAATGGGATCCAAGGGTAACCACCCAGGT  250

seq1  AGCTGATAGGTCTCTGTCAGTATAATCAATACAGAGATCATCTGGTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATAGGTCTCTGTCAGTATAATCAATACAGAGATCATCTGGTTTAT  300

seq1  AGTTCCTGCTATACTTTATCTTTCTCAGATCTCTGATGACGTTAACAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTGCTATACTTTATCTTTCTCAGATCTCTGATGACGTTAACAGCT  350

seq1  AATTCTAGATTTTTCAGGTTAGCAGCCGCTCCCTGGTCATTTATGAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGATTTTTCAGGTTAGCAGCCGCTCCCTGGTCATTTATGAAAGC  400

seq1  CAGGTCTTGCTTTTCTAGAGCTATTAGGTTGCCTGGTGAGAAAGGTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTGCTTTTCTAGAGCTATTAGGTTGCCTGGTGAGAAAGGTAAGA  450

seq1  GATTTCACAGAAAGGTTTGCCTTGCTAACAGGTTTCATATTAAAAGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCACAGAAAGGTTTGCCTTGCTAACAGGTTTCATATTAAAAGATAA  500

seq1  AGAGGTTTCATATATAACTTTTTACTATTGATTCCTTTAAAAGAACTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTTCATATATAACTTTTTACTATTGATTCCTTTAAAAGAACTTTC  550

seq1  TTTAAAATGACTGCCTCAGTAATTGGCCACTTGTTTTTAGTGATAAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGACTGCCTCAGTAATTGGCCACTTGTTTTTAGTGATAAATAA  600

seq1  TTGGATGAAAACCATTTAAGATTTATATAAACTGTGAAGGTCTAAAGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGAAAACCATTTAAGATTTATATAAACTGTGAAGGTCTAAAGGTA  650

seq1  ATTTAAGGTACTAAGGTGTAGAAATGCAAGTTGTAAACACCTGAGAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGTACTAAGGTGTAGAAATGCAAGTTGTAAACACCTGAGAATGT  700

seq1  TGAAGCTTAAGTATGGTATGAGGTCT-AAGAAAGTGGTTTAAGGTAAGTA  749
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGAAGCTTAAGTATGGTATGAGGTCTAAAGAAAGTGGTTTAAGGTAAGTA  750

seq1  AATTCAAGTTATAAACGTATAAGAAGATGATTTAGAATAAGACATAACTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAGTTATAAACGTATAAGAAGATGATTTAGAATAAGACATAACTG  800

seq1  ATTACTTTCCTGCCTGTATGCTATTGCTATCCTGAAGCTTTCAAAGGTTT  849
      |||||||||||||||||||||||||||||||||||||||||||| | || 
seq2  ATTACTTTCCTGCCTGTATGCTATTGCTATCCTGAAGCTTTCAAGGTTTG  850

seq1  GGAGTTTAAACATTCACCAATGGAGTTCTTTGAAGCTGGTTACACACTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTAAACATTCACCAATGGAGTTCTTTGAAGCTGGTTACACACTGT  900

seq1  GACTATTC-TTAGTCACAAGCTCAAAATTATAAATTTCTCTCTC-GTTG-  946
      |||||||| ||||||||||||||||||||||||||||||||||| |||| 
seq2  GACTATTCTTTAGTCACAAGCTCAAAATTATAAATTTCTCTCTCGGTTGT  950

seq1  TCTTTGAAAAATAGACATA-AAGATGCATCTTATTATGCTAAAAC-ACCC  994
      |||||| |||||||| | | ||||||||||||||||||||||||| ||||
seq2  TCTTTG-AAAATAGAAACATAAGATGCATCTTATTATGCTAAAACAACCC  999

seq1  ATGTAC-AGTCTATGTATCCAGCCTTCTGAAG-AGAGAAAAGAGTG--TT  1040
      |||||| |||||||| || ||| ||||||||| |||||||||||||  ||
seq2  ATGTACAAGTCTATGAAT-CAGGCTTCTGAAGAAGAGAAAAGAGTGGTTT  1048

seq1  CGTGCTTTTTAACCCAAAGATA-GCTTTCACTCTG-TCTCAAAGGCAT-G  1087
      |||||||||| ||||||||||| |||||||||||| |||| ||||||| |
seq2  CGTGCTTTTT-ACCCAAAGATAGGCTTTCACTCTGTTCTC-AAGGCATGG  1096

seq1  AGTCTACTCCAGCTGTTTTACAGACAATTGTTAGATTTTT  1127
      ||||||   |||||| ||||||||  ||   |||||||||
seq2  AGTCTAACTCAGCTG-TTTACAGAACAT--GTAGATTTTT  1133