BAC Information

Click to search

BAC

Clone NameB6Ng01-227G01
Chromosome12 (Build37)
Map Location 65,288,131 - 65,433,651
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC435302
Downstream geneEG623046, LOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227G01.bB6Ng01-227G01.g
ACCGA041063GA041064
length1,1491,144
definitionB6Ng01-227G01.b B6Ng01-227G01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,288,131 - 65,289,139)(65,432,520 - 65,433,651)
sequence
gaattcttcactaaacccatctgatcctggactttttttttttttttttt
tgattgggagactattaatgactgctttatacctttaggtgttatgggac
agtttagatagtttatatgatcctgttttaaatttggtaccttgtatgtg
tctagaaatttgttcatttcatccagattttccaatttagttgaatataa
acttttgtagtaggatttgatgtttttttgaatttccagtttccgttgtt
atgtctcccttttcatttctgattttataaatttgtatactgtctctgtg
tcctctagttattctggttaagagtttatctaccttgttgattgctcttg
gttttgttaattctttgtttagttctttttgtttctacttggttgatttc
agccctgagtttgattatttccggccgtctactcctcttgggtgtatttg
cttttaatgttctagagctttcaggtgtgctgtcaagctgctagtgtaaa
ctctctccagttttgttttagaggcactttgagctatcagttttcccctt
acccctgcttcattgtgtgccataagttttggtatgctgtgtcttcattt
attttccttctgaaatctttttcttttaatatttttattaggtattttcc
tcatttacattgatacatatgcagctggagtcaagagctccggggtactg
gttagttcataatgttgttccacctatagggttgcagatccctttagctc
cttgggtactttctctagctcctccattggggccctgtgatccatccaat
agctgactgtgagcatccacttctgtgtttgctaggccccgggcatagtc
tcacaagagacagctatatctgggtccttttcagcaaaatcttgctagtg
tatgcaatggtgttcacgtttggaagctgattatgggatggatccctgga
tatggcagtctctagaatggtccatcctttcgtcacaagctccaaccttg
tctctgttacttctttcatggggtgttttgttcccaattctaagaagggg
ccaagtgttcccaccttggtcctcgtcttcttgagttccatggcgttagc
caattggtattcttatatcaatggatatcttagtttatggcttaatatc
gaattcactttaataaacacaatatgctcatgaactaatttaatacaggt
tccttagtatagtaggtaacactccagtctctcataatttatacttgcat
gatgttgtgcagcattgacccctgagatgaaaacattccattttgcagag
aagaacatttaatacagaaagtaaataacccaaaatcgtttcaggaagat
cctaaaactgactacattctctaggttcctccctccaacatttacagaag
caatcatgattgctgagcctcgctctcagaccagctgagctgctcagaag
aggcttctaaaataaagaccagctaagcatctgaaagacagctgaactgt
ctggaaaaattgctcaggctctctgagccaccagaaaagaatacctttaa
aactgttgatctgcctgcaggttgtgtgtgcggcttccaggtttctagct
gtcatcctttccggaatgggctacagtaatactgccctttttgagccatt
ttgctcctgtaactaatccttctcatatactcctggaagtaactacaatg
aaacttattgtttcattatgttggcctttggtgacctccatactttgatc
tgtcatggattccctatgtggagtgaggagacagttacacacagcttctc
aggaatagtgtcatagagtgcttggtgaggaataacaggagcaaaatatc
aaaattctctgtttacatagttaaatcattgattttgtgtaagagcagga
gccttgccatatgcagtataaaatattacagttcataacacacactggcc
tggaacctgagctgatatgtttcagacagcattgatgctgtgtggaatga
ggtatttgtagcacagagagaacatgctgtgtgatcagaatcaaggctca
gtcaataaaacacatttgaactctgccagaaaaaacctcagggttcttaa
gatgttagactttggaatttgacttatgggttgttgtatgctcaggaaac
ccttttactagtgcaatggtttcgcccatctttaatacttagctaagaag
gcttgaacatactttgatgggagcaatgtgtcctgtggtctggaagtttg
agcaaatgcatgtccttcaattgtggaggtcaagaaagagtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_65288131_65289139
seq2: B6Ng01-227G01.b_181_1193

seq1  GTACCTTGTATGTGTCTAGAAATTTGTTCATTTCATCCAGATTTTCCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTGTATGTGTCTAGAAATTTGTTCATTTCATCCAGATTTTCCAAT  50

seq1  TTAGTTGAATATAAACTTTTGTAGTAGGATTTGATGTTTTTTTGAATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGAATATAAACTTTTGTAGTAGGATTTGATGTTTTTTTGAATTTC  100

seq1  CAGTTTCCGTTGTTATGTCTCCCTTTTCATTTCTGATTTTATAAATTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCCGTTGTTATGTCTCCCTTTTCATTTCTGATTTTATAAATTTGT  150

seq1  ATACTGTCTCTGTGTCCTCTAGTTATTCTGGTTAAGAGTTTATCTACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTCTCTGTGTCCTCTAGTTATTCTGGTTAAGAGTTTATCTACCTT  200

seq1  GTTGATTGCTCTTGGTTTTGTTAATTCTTTGTTTAGTTCTTTTTGTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTGCTCTTGGTTTTGTTAATTCTTTGTTTAGTTCTTTTTGTTTCT  250

seq1  ACTTGGTTGATTTCAGCCCTGAGTTTGATTATTTCCGGCCGTCTACTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTTGATTTCAGCCCTGAGTTTGATTATTTCCGGCCGTCTACTCCT  300

seq1  CTTGGGTGTATTTGCTTTTAATGTTCTAGAGCTTTCAGGTGTGCTGTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTGTATTTGCTTTTAATGTTCTAGAGCTTTCAGGTGTGCTGTCAA  350

seq1  GCTGCTAGTGTAAACTCTCTCCAGTTTTGTTTTAGAGGCACTTTGAGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTAGTGTAAACTCTCTCCAGTTTTGTTTTAGAGGCACTTTGAGCTA  400

seq1  TCAGTTTTCCCCTTACCCCTGCTTCATTGTGTGCCATAAGTTTTGGTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTTCCCCTTACCCCTGCTTCATTGTGTGCCATAAGTTTTGGTATG  450

seq1  CTGTGTCTTCATTTATTTTCCTTCTGAAATCTTTTTCTTTTAATATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTTCATTTATTTTCCTTCTGAAATCTTTTTCTTTTAATATTTTT  500

seq1  ATTAGGTATTTTCCTCATTTACATTGATACATATGCAGCTGGAGTCAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTATTTTCCTCATTTACATTGATACATATGCAGCTGGAGTCAAGA  550

seq1  GCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCA  600

seq1  GATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGCCCT  650

seq1  GTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGG  700

seq1  CCCC-GGCATAGTCTCACAAGAGACAGCTATATCTGGGTCC-TTTCAGCA  748
      |||| |||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCCCGGGCATAGTCTCACAAGAGACAGCTATATCTGGGTCCTTTTCAGCA  750

seq1  AAATCTTGCTAGTGTATGCAATGGTGTTCACGTTTGGAAGCTGATTATGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTGCTAGTGTATGCAATGGTGTTCACGTTTGGAAGCTGATTATGG  800

seq1  GATGGATCCCTGGATATGGCAGTCTCTAG-ATGGTCCATCCTTTCGTCAC  847
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GATGGATCCCTGGATATGGCAGTCTCTAGAATGGTCCATCCTTTCGTCAC  850

seq1  -AGCTCCAACCTTTGTCTCTGTAACTCCTTTCCATGGGTGTTTTGTTCCC  896
       |||||||||| |||||||||| ||| |||||   |||||||||||||||
seq2  AAGCTCCAACC-TTGTCTCTGTTACTTCTTTCATGGGGTGTTTTGTTCCC  899

seq1  AATTCTAAGAAGGGGCCAAGTGTCCACACTTTGGTCTTCGTTCTTCTTGA  946
      ||||||||||||||||||||||| | ||| |||||| ||| |||||||||
seq2  AATTCTAAGAAGGGGCCAAGTGTTCCCACCTTGGTCCTCG-TCTTCTTGA  948

seq1  GTTTCATGCGTTTAGCAAATT-GTA-TCTTATATC-ATGGGTATCCTAAG  993
      ||| ||||   ||||| |||| ||| ||||||||| |||| ||| || ||
seq2  GTTCCATGGCGTTAGCCAATTGGTATTCTTATATCAATGGATAT-CTTAG  997

seq1  TTTATGGGCTAATATC  1009
      |||||||  |||||||
seq2  TTTATGGCTTAATATC  1013

seq1: chr12_65432520_65433651
seq2: B6Ng01-227G01.g_66_1209 (reverse)

seq1  CACACTCTTTCTTGA-CTTCACAATGGGAGGGACAATTGCAATTTTCCAA  49
      ||||||||||||||| || ||||||  || |||||  |||| ||   |||
seq2  CACACTCTTTCTTGACCTCCACAAT-TGAAGGACA--TGCATTTGCTCAA  47

seq1  AACTCCAGA-CACA-GACACAATGCTCAC-TC-AGGTATG-TCAAG-CTT  93
      |  |||||| |||| |||||| ||||| | || | ||||| ||||| |||
seq2  ACTTCCAGACCACAGGACACATTGCTCCCATCAAAGTATGTTCAAGCCTT  97

seq1  CTTAGCTAAGTA-TAAAGGT-GGCGAAACATTGGCACTAGTAAAAAGGTT  141
      |||||||||||| ||||| | ||||||||  | |||||||||||| ||||
seq2  CTTAGCTAAGTATTAAAGATGGGCGAAACCATTGCACTAGTAAAAGGGTT  147

seq1  T-CTGAGCATACAACAA-CCATAAGTCAA--TTCAAAGTCTAACATC-TA  186
      | ||||||||||||||| |||||||||||  | |||||||||||||| ||
seq2  TCCTGAGCATACAACAACCCATAAGTCAAATTCCAAAGTCTAACATCTTA  197

seq1  AGAACCCTGAGG-TTTTTCTGGCAGAGTTCAAATGTGTTTTATTGACTGA  235
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGAACCCTGAGGTTTTTTCTGGCAGAGTTCAAATGTGTTTTATTGACTGA  247

seq1  GCCTTGATTCTGATCACACAGCATGTTCTCTCTGTGCTACAAATACCTCA  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGATTCTGATCACACAGCATGTTCTCTCTGTGCTACAAATACCTCA  297

seq1  TTCCACACAGCATCAATGCTGTCTGAAACATATCAGCTCAGGTTCCAGGC  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACACAGCATCAATGCTGTCTGAAACATATCAGCTCAGGTTCCAGGC  347

seq1  CAGTGTGTGTTATGAACTGTAATATTTTATACTGCATATGGCAAGGCTCC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGTGTTATGAACTGTAATATTTTATACTGCATATGGCAAGGCTCC  397

seq1  TGCTCTTACACAAAATCAATGATTTAACTATGTAAACAGAGAATTTTGAT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTACACAAAATCAATGATTTAACTATGTAAACAGAGAATTTTGAT  447

seq1  ATTTTGCTCCTGTTATTCCTCACCAAGCACTCTATGACACTATTCCTGAG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTCCTGTTATTCCTCACCAAGCACTCTATGACACTATTCCTGAG  497

seq1  AAGCTGTGTGTAACTGTCTCCTCACTCCACATAGGGAATCCATGACAGAT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTGTGTAACTGTCTCCTCACTCCACATAGGGAATCCATGACAGAT  547

seq1  CAAAGTATGGAGGTCACCAAAGGCCAACATAATGAAACAATAAGTTTCAT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTATGGAGGTCACCAAAGGCCAACATAATGAAACAATAAGTTTCAT  597

seq1  TGTAGTTACTTCCAGGAGTATATGAGAAGGATTAGTTACAGGAGCAAAAT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTACTTCCAGGAGTATATGAGAAGGATTAGTTACAGGAGCAAAAT  647

seq1  GGCTCAAAAAGGGCAGTATTACTGTAGCCCATTCCGGAAAGGATGACAGC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAAAAAGGGCAGTATTACTGTAGCCCATTCCGGAAAGGATGACAGC  697

seq1  TAGAAACCTGGAAGCCGCACACACAACCTGCAGGCAGATCAACAGTTTTA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACCTGGAAGCCGCACACACAACCTGCAGGCAGATCAACAGTTTTA  747

seq1  AAGGTATTCTTTTCTGGTGGCTCAGAGAGCCTGAGCAATTTTTCCAGACA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATTCTTTTCTGGTGGCTCAGAGAGCCTGAGCAATTTTTCCAGACA  797

seq1  GTTCAGCTGTCTTTCAGATGCTTAGCTGGTCTTTATTTTAGAAGCCTCTT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCTGTCTTTCAGATGCTTAGCTGGTCTTTATTTTAGAAGCCTCTT  847

seq1  CTGAGCAGCTCAGCTGGTCTGAGAGCGAGGCTCAGCAATCATGATTGCTT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAGCTCAGCTGGTCTGAGAGCGAGGCTCAGCAATCATGATTGCTT  897

seq1  CTGTAAATGTTGGAGGGAGGAACCTAGAGAATGTAGTCAGTTTTAGGATC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAATGTTGGAGGGAGGAACCTAGAGAATGTAGTCAGTTTTAGGATC  947

seq1  TTCCTGAAACGATTTTGGGTTATTTACTTTCTGTATTAAATGTTCTTCTC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAAACGATTTTGGGTTATTTACTTTCTGTATTAAATGTTCTTCTC  997

seq1  TGCAAAATGGAATGTTTTCATCTCAGGGGTCAATGCTGCACAACATCATG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAATGGAATGTTTTCATCTCAGGGGTCAATGCTGCACAACATCATG  1047

seq1  CAAGTATAAATTATGAGAGACTGGAGTGTTACCTACTATACTAAGGAACC  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATAAATTATGAGAGACTGGAGTGTTACCTACTATACTAAGGAACC  1097

seq1  TGTATTAAATTAGTTCATGAGCATATTGTGTTTATTAAAGTGAATTC  1132
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAAATTAGTTCATGAGCATATTGTGTTTATTAAAGTGAATTC  1144