BAC Information

Click to search

BAC

Clone NameB6Ng01-227O12
Chromosome12 (Build37)
Map Location 95,808,352 - 95,920,291
singlet/doubletdoublet
Overlap genenone
Upstream gene2610022K04Rik-ps, EG633639
Downstream geneLOC217786, LOC100039603, LOC667688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227O12.bB6Ng01-227O12.g
ACCGA041454GA041455
length1,117748
definitionB6Ng01-227O12.b B6Ng01-227O12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,919,184 - 95,920,291)(95,808,352 - 95,809,099)
sequence
gaattccacagaagttacacatctcagggcctacttctttttaaaaaaaa
tgtttattagtcagtctagcaaattcttttaataatttttaagtattctg
ataaatgttcattccactttctaacttgtttaaatacacgtaaacatttt
aatgtctcattagcataaacacatactctttacttcttaatacttagata
tttaactgacaataaatctccccaataagtaaattctaaatagaataaat
aaagcagaatattttaaataaaacactgtactgcatgagtattgtaaaca
tccagcaaaaaattagaaatccagatgactcaatatttttaaaatgcaaa
tacaaagatgatattaatagaaaactttataaaaataatcaaaaatccaa
gtatatttcatttaaattaagttattttaatagttgactttttaattttc
aacatcttttggttaaaaatatacctcctgtacaatattttgtccttttg
ggcttttgcattgtttatttttatggcaacaattgaataattactagaaa
tacaatattgggtttgcctaatacataccaagttgtttatagtgtctaaa
attggagatctggtacctaaaaatgttatgaaacaaatattttcatatta
attcatttatttattcacttttcattttgatcgcagccccctctatccca
gtaccccctcacacagcccttcattgactctcccccttcccctttttcca
tcagctgatgtgtggagcatatcaaaggacatttacactaggcttctgtc
tacaaccatagtagagtatcattaataatgtcagggattgtgtcttaccc
ttggaatatgtctcaatttgggccagtcattagttgaccatgtcctcagt
ctctgctctatctttgttcgtgcacatcttgtaggcaggaaccattttag
gtctaagcttttgtgggttggttggtgacccttatgcctctactgggatt
cctgccttggctataaggagtagttacttcaagttccatatcctccactg
ctagagtcaccctcatttattgtcaccctcaatagattcgctgagctccc
catccagtctcctggcc

gaattcactgtaaaataataaaacaacttaatgaaaataaaataataata
aatatgaaaaataaaggcatgcttgattttggatgcacagtgtttggatg
tgaaaagtctatgaggttgattccatggtacacattcagcattcttaaaa
ataaacacttcagtgcttccttcttccatgtattcctggtgactttttaa
attaaacttgatatgagacatgtttacatacttacagcatgacagacatc
tttcaaaatgtactgttttctcagaaacaagaatgacttcaaaagtcatg
ctttataatgaaacaaaaatgtcacatcacatactgaatataaattcttc
ctcagtattttattcacatttaaaagttatccatcttttatcattcaggt
ttggtgagtttatatcagattaacggtatattttatctgataaatgcttt
acaaatatttcccacaaacttgggcttgcatcctttttggaagcatagaa
tttttggatagtatcaaagataagtttataagggtaaatggaaagagatt
tttaatttaatttaaaatagccctggccttggatctttagatcttttaat
actttattatacatgataaaatataagagactagtttaataagttttcat
gtggaaaacagttttccaggggatttttaaaataaagttatttgatcctc
agtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgtgtgtgtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_95919184_95920291
seq2: B6Ng01-227O12.b_58_1164 (reverse)

seq1  GGCCA-GAGACTTGGGATGGGGGAGGCTCCAGCGAATCTA-TGAGGGTGA  48
      ||||| ||||||  ||||||||   ||| ||||||||||| |||||||||
seq2  GGCCAGGAGACT--GGATGGGG--AGCT-CAGCGAATCTATTGAGGGTGA  45

seq1  CAATAAATGAGGGTGACTCTAGCAGTGGAGGATATGGAACTTGAAGTAAC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAATGAGGGTGACTCTAGCAGTGGAGGATATGGAACTTGAAGTAAC  95

seq1  TACCTCCTATAGCCAA-GCAGGAATCCCAGTAGAGGCATAA-GGTCACCA  146
      |||  | ||||||||| |||||||||||||||||||||||| ||||||||
seq2  TACTCCTTATAGCCAAGGCAGGAATCCCAGTAGAGGCATAAGGGTCACCA  145

seq1  ACCAACCCACAAAAGCTTAGACCTAAAATGGTTCCTGCCTACAAGATGTG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCCACAAAAGCTTAGACCTAAAATGGTTCCTGCCTACAAGATGTG  195

seq1  CACGAACAAAGATAGAGCAGAGACTGAGGACATGGTCAACTAATGACTGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAACAAAGATAGAGCAGAGACTGAGGACATGGTCAACTAATGACTGG  245

seq1  CCCAAATTGAGACATATTCCAAGGGTAAGACACAATCCCTGACATTATTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATTGAGACATATTCCAAGGGTAAGACACAATCCCTGACATTATTA  295

seq1  ATGATACTCTACTATGGTTGTAGACAGAAGCCTAGTGTAAATGTCCTTTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACTCTACTATGGTTGTAGACAGAAGCCTAGTGTAAATGTCCTTTG  345

seq1  ATATGCTCCACACATCAGCTGATGGAAAAAGGGGAAGGGGGAGAGTCAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTCCACACATCAGCTGATGGAAAAAGGGGAAGGGGGAGAGTCAAT  395

seq1  GAAGGGCTGTGTGAGGGGGTACTGGGATAGAGGGGGCTGCGATCAAAATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCTGTGTGAGGGGGTACTGGGATAGAGGGGGCTGCGATCAAAATG  445

seq1  AAAAGTGAATAAATAAATGAATTAATATGAAAATATTTGTTTCATAACAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGAATAAATAAATGAATTAATATGAAAATATTTGTTTCATAACAT  495

seq1  TTTTAGGTACCAGATCTCCAATTTTAGACACTATAAACAACTTGGTATGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGTACCAGATCTCCAATTTTAGACACTATAAACAACTTGGTATGT  545

seq1  ATTAGGCAAACCCAATATTGTATTTCTAGTAATTATTCAATTGTTGCCAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGCAAACCCAATATTGTATTTCTAGTAATTATTCAATTGTTGCCAT  595

seq1  AAAAATAAACAATGCAAAAGCCCAAAAGGACAAAATATTGTACAGGAGGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAACAATGCAAAAGCCCAAAAGGACAAAATATTGTACAGGAGGT  645

seq1  ATATTTTTAACCAAAAGATGTTGAAAATTAAAAAGTCAACTATTAAAATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTAACCAAAAGATGTTGAAAATTAAAAAGTCAACTATTAAAATA  695

seq1  ACTTAATTTAAATGAAATATACTTGGATTTTTGATTATTTTTATAAAGTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTTAAATGAAATATACTTGGATTTTTGATTATTTTTATAAAGTT  745

seq1  TTCTATTAATATCATCTTTGTATTTGCATTTTAAAAATATTGAGTCATCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTAATATCATCTTTGTATTTGCATTTTAAAAATATTGAGTCATCT  795

seq1  GGATTTCTAATTTTTTGCTGGATGTTTACAATACTCATGCAGTACAGTGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTAATTTTTTGCTGGATGTTTACAATACTCATGCAGTACAGTGT  845

seq1  TTTATTTAAAATATTCTGCTTTATTTATTCTATTTAGAATTTACTTATTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAAAATATTCTGCTTTATTTATTCTATTTAGAATTTACTTATTG  895

seq1  GGGAGATTTATTGTCAGTTAAATATCTAAGTATTAAGAAGTAAAGAGTAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATTTATTGTCAGTTAAATATCTAAGTATTAAGAAGTAAAGAGTAT  945

seq1  GTGTTTATGCTAATGAGACATTAAAATGTTTACGTGTATTTAAACAAGTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTATGCTAATGAGACATTAAAATGTTTACGTGTATTTAAACAAGTT  995

seq1  AGAAAGTGGAATGAACATTTATCAGAATACTTAAAAATTATTAAAAGAAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGGAATGAACATTTATCAGAATACTTAAAAATTATTAAAAGAAT  1045

seq1  TTGCTAGACTGACTAATAAACATTTTTTTTAAAAAGAAGTAGGCCCTGAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGACTGACTAATAAACATTTTTTTTAAAAAGAAGTAGGCCCTGAG  1095

seq1  ATGTGTAACTTC  1108
      ||||||||||||
seq2  ATGTGTAACTTC  1107


seq1: chr12_95808352_95809099
seq2: B6Ng01-227O12.g_69_816

seq1  GAATTCACTGTAAAATAATAAAACAACTTAATGAAAATAAAATAATAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTAAAATAATAAAACAACTTAATGAAAATAAAATAATAATA  50

seq1  AATATGAAAAATAAAGGCATGCTTGATTTTGGATGCACAGTGTTTGGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAAAAATAAAGGCATGCTTGATTTTGGATGCACAGTGTTTGGATG  100

seq1  TGAAAAGTCTATGAGGTTGATTCCATGGTACACATTCAGCATTCTTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTCTATGAGGTTGATTCCATGGTACACATTCAGCATTCTTAAAA  150

seq1  ATAAACACTTCAGTGCTTCCTTCTTCCATGTATTCCTGGTGACTTTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACTTCAGTGCTTCCTTCTTCCATGTATTCCTGGTGACTTTTTAA  200

seq1  ATTAAACTTGATATGAGACATGTTTACATACTTACAGCATGACAGACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACTTGATATGAGACATGTTTACATACTTACAGCATGACAGACATC  250

seq1  TTTCAAAATGTACTGTTTTCTCAGAAACAAGAATGACTTCAAAAGTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAATGTACTGTTTTCTCAGAAACAAGAATGACTTCAAAAGTCATG  300

seq1  CTTTATAATGAAACAAAAATGTCACATCACATACTGAATATAAATTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAATGAAACAAAAATGTCACATCACATACTGAATATAAATTCTTC  350

seq1  CTCAGTATTTTATTCACATTTAAAAGTTATCCATCTTTTATCATTCAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTATTTTATTCACATTTAAAAGTTATCCATCTTTTATCATTCAGGT  400

seq1  TTGGTGAGTTTATATCAGATTAACGGTATATTTTATCTGATAAATGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAGTTTATATCAGATTAACGGTATATTTTATCTGATAAATGCTTT  450

seq1  ACAAATATTTCCCACAAACTTGGGCTTGCATCCTTTTTGGAAGCATAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATTTCCCACAAACTTGGGCTTGCATCCTTTTTGGAAGCATAGAA  500

seq1  TTTTTGGATAGTATCAAAGATAAGTTTATAAGGGTAAATGGAAAGAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGATAGTATCAAAGATAAGTTTATAAGGGTAAATGGAAAGAGATT  550

seq1  TTTAATTTAATTTAAAATAGCCCTGGCCTTGGATCTTTAGATCTTTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTAATTTAAAATAGCCCTGGCCTTGGATCTTTAGATCTTTTAAT  600

seq1  ACTTTATTATACATGATAAAATATAAGAGACTAGTTTAATAAGTTTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTATACATGATAAAATATAAGAGACTAGTTTAATAAGTTTTCAT  650

seq1  GTGGAAAACAGTTTTCCAGGGGATTTTTAAAATAAAGTTATTTGATCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAACAGTTTTCCAGGGGATTTTTAAAATAAAGTTATTTGATCCTC  700

seq1  AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGTGTGTGTGTGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGTGTGTGTGTGTT  748


| Home | SequenceCutter | Blast | Download |