BAC Information

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BAC

Clone NameB6Ng01-228I05
Chromosome12 (Build37)
Map Location 115,755,693 - 115,756,667
singlet/doubletsinglet
Overlap geneIgh
Upstream geneIghd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469
Downstream geneEG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228I05.bB6Ng01-228I05.g
ACCGA041907GA041908
length974920
definitionB6Ng01-228I05.b B6Ng01-228I05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgggacattcaggcatagttgtcaacagaaaaaagggggggtg
agcattatggcacccacagatcaattaacaattcttggaagttactattt
ccacttaaaaggaaatagaaataattaccaaataaatgtattctgtgact
caatctgtttcctatattgcgtctgtatgcatttaaaggaagttggagag
aaagagcaatagaaaaacctgggaccagtcaaatatatcttctcttctat
caccggtcctgtgtaattatcattttgcagggtagagtccctagggtatc
aacattcatcattataatggaatagttatcccttagtgcaggatgccaga
caatatttcattggcatttcaacgtctatgtttttctgggaaatgtctat
gagactgaactttatactccagtatggtaggatgctgatggctgtcatat
gttgtaatggacaggagtgcatgcctacttaagtactatgaatttactcg
acatcattcatttactctgtaatctatttacaatataatgggctctgtga
gattataaatagttagtatgagcttattctcctaacttaaactaatatga
ggaacacgatatttgcagatcaagtgcagtgcctattaaacttttcaaga
tatttctgtgaagacacacaatgctttcaagcatttttcttattctcctt
ttattatgtagattatttccctcatcctctggatgtatactagcttagtt
tatcttaaattgcaaagaatttctcatgtaactctgctataatacacata
tattttgttttgtcctcaacttaagagtaagaacacgatttgcattattc
cacagggaggattgcatttggagattgactcattacctcactctgatttt
ctcacatattgctataccatgatccctctgtaatcagtgtgtgtgtgtgt
gtgtgtgttgtgtgtgtgttgtgt
gaattcattccgaaagtgtggtacatttacacaatggattactcctcagc
tattaaaaacaatgaacttcatggaattcacaggcaaatggatggaactt
gaaaatatcattctgagtgagggaatccagccaccaaagaacacacatca
gtgtgcactcactattaagtagttttatgaaggacaacatttaactgagg
cttgcttacaggttttgagattcagtccagtatcatcaaggcagtagagt
ataacagcatccagatgggcatggtgcaagcagagctgtgagtccaaaag
ttcagaatacccaagatacaattcacagactatttgaaggtaaagaagga
atatcaaagtgtgaatgcttctgtgcatcttagaagggggaacaaaatac
atacaggaggaattatggaaacaaaatgtggaacacagacaaaggaaaag
gccatccagagtcttctctacctggggattcatcctgtatacagttgcca
aacccagacactattgcagatgctgacaagttcttgctgatgggagcctg
atatggttacctcctgaaagctgtaccagaacctgaaaaatacagaggca
gatgcttgaagccaaccagtggcctgatcgcaagatccttgacagaggaa
ttgaagaagggactgaaggagctgagatggtttgcagctgcatggtagga
gcaagagtgttaaatggtcagaactgccccattccccaagatcctgggta
ctggaccacaaaccaaatagtgaacatggagggtcccatggctccagtca
cacatgtggcagaggatgtcattctttgatatcagtgggaggaatggccc
ttgggcttgaaagggttcgatgttccaatgtaggggaaatgccagggtgg
gaaggtgggtaggtgtattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_115755693_115756667
seq2: B6Ng01-228I05.b_50_1023

seq1  GAATTCCTGGGACATTCAGGCATAGTTGTCAACAGAAAAAAGGGGGGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGACATTCAGGCATAGTTGTCAACAGAAAAAAGGGGGGGTG  50

seq1  AGCATTATGGCACCCACAGATCAATTAACAATTCTTGGAAGTTACTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTATGGCACCCACAGATCAATTAACAATTCTTGGAAGTTACTATTT  100

seq1  CCACTTAAAAGGAAATAGAAATAATTACCAAATAAATGTATTCTGTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAAAAGGAAATAGAAATAATTACCAAATAAATGTATTCTGTGACT  150

seq1  CAATCTGTTTCCTATATTGCGTCTGTATGCATTTAAAGGAAGTTGGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGTTTCCTATATTGCGTCTGTATGCATTTAAAGGAAGTTGGAGAG  200

seq1  AAAGAGCAATAGAAAAACCTGGGACCAGTCAAATATATCTTCTCTTCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCAATAGAAAAACCTGGGACCAGTCAAATATATCTTCTCTTCTAT  250

seq1  CACCGGTCCTGTGTAATTATCATTTTGCAGGGTAGAGTCCCTAGGGTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGTCCTGTGTAATTATCATTTTGCAGGGTAGAGTCCCTAGGGTATC  300

seq1  AACATTCATCATTATAATGGAATAGTTATCCCTTAGTGCAGGATGCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCATCATTATAATGGAATAGTTATCCCTTAGTGCAGGATGCCAGA  350

seq1  CAATATTTCATTGGCATTTCAACGTCTATGTTTTTCTGGGAAATGTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTCATTGGCATTTCAACGTCTATGTTTTTCTGGGAAATGTCTAT  400

seq1  GAGACTGAACTTTATACTCCAGTATGGTAGGATGCTGATGGCTGTCATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGAACTTTATACTCCAGTATGGTAGGATGCTGATGGCTGTCATAT  450

seq1  GTTGTAATGGACAGGAGTGCATGCCTACTTAAGTACTATGAATTTACTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAATGGACAGGAGTGCATGCCTACTTAAGTACTATGAATTTACTCG  500

seq1  ACATCATTCATTTACTCTGTAATCTATTTACAATATAATGGGCTCTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATTCATTTACTCTGTAATCTATTTACAATATAATGGGCTCTGTGA  550

seq1  GATTATAAATAGTTAGTATGAGCTTATTCTCCTAACTTAAACTAATATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATAAATAGTTAGTATGAGCTTATTCTCCTAACTTAAACTAATATGA  600

seq1  GGAACACGATATTTGCAGATCAAGTGCAGTGCCTATTAAACTTTTCAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACGATATTTGCAGATCAAGTGCAGTGCCTATTAAACTTTTCAAGA  650

seq1  TATTTCTGTGAAGACACACAATGCTTTCAAGCATTTTTCTTATTCTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGTGAAGACACACAATGCTTTCAAGCATTTTTCTTATTCTCCTT  700

seq1  TTATTATGTAGATTATTTCCCTCATCCTCTGGATGTATACTAGCTTAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGTAGATTATTTCCCTCATCCTCTGGATGTATACTAGCTTAGTT  750

seq1  TATCTTAAATTGCAAAGAATTTCTCATGTAACTCTGCTATAATACACATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAAATTGCAAAGAATTTCTCATGTAACTCTGCTATAATACACATA  800

seq1  TA-TTTGTTTTGTCCTCAACTTAAGAGTAAGAACACGATTTGCATTATTC  849
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTTTTGTCCTCAACTTAAGAGTAAGAACACGATTTGCATTATTC  850

seq1  CACAGGGAGGATTGCATTTGGAGATTGACTCATTACCTCACTCTGATTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGAGGATTGCATTTGGAGATTGACTCATTACCTCACTCTGATTTT  900

seq1  CTCACATATTGCTATACCATGATCCCTCTGTAATCAGTGTGTGTGTGTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATATTGCTATACCATGATCCCTCTGTAATCAGTGTGTGTGTGTGT  950

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGT  975
      |||||||| ||||||||||| |||||
seq2  GTGTGTGT-TGTGTGTGTGT-TGTGT  974