BAC Information

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BAC

Clone NameB6Ng01-229F20
Chromosome12 (Build37)
Map Location 23,496,825 - 23,680,392
singlet/doubletdoublet
Overlap geneLOC100042895, LOC100043435
Upstream geneEG432637, LOC668656, EG629133, EG668660, EG668662, LOC668664, 2410018L13Rik, LOC77114, EG668669, EG668670, LOC668680
Downstream geneEG628081, LOC100042903, LOC100043440, EG668518, LOC100043445, LOC668697, LOC100042923, LOC677338, EG668701, LOC668471, LOC668703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229F20.bB6Ng01-229F20.g
ACCGA042534GA042535
length195891
definitionB6Ng01-229F20.b B6Ng01-229F20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,680,192 - 23,680,392)(23,496,825 - 23,497,709)
sequence
atccagggacattttgcctgaggaatggaagagggagacttaggattagc
cagtgctctgattaaggtctggaaccctctggaaaatggacaatgtccag
tctcctctctctctctctctctctctctctctctctctctctctctctct
ctctctctctctctctctctctctctctctctctctctctctctc
gaattctgatgtcacctctgtaatgctcggtcaggacagccccttctcta
aggtgcctgtgggaatctctggggcatgttttcagatcttaaaagattct
atgcacacacactgttgaagctgaattgcctgggaagtcacagactgagt
tgtctttgttcctgctaagtgactcatgggtgccctttaaaagagaatgt
aacagacatgttctgatggggaaaacacatgaagaatgcagctgctgttt
cccaaacagccatcagcccatctactttaggccaatgaggggaaacgcac
ccaaagatcccagttgaccttccccatgagcatcttgtgtcctggtcctg
ggcccagagtgggggtgggggataaagagcctggccttggtggcaaaggg
aaacagctttcccagggctatttagaaaagatgctgtgtctacagtctgc
tgtgcttgtaggcgaatcactttctgtagcaggataatagataatcctga
gtccccttatggaacatttactatatgtacaacacagttctttgcgttgt
acaaccaagtttcctagcctcccaaagaaagaaccagggctcattaagtg
tttagagacttttccagggtcacatagaggatgtctctgtgggggacaac
caggcagctagatgcagtgcctatctagagtagcaggtctcaacctgtgg
gttcataacccatttggcaaacctctatctccaaaaatatttacactaca
atttgcaacagtagaaaaaaattagttatgaaaatagcaacaaatatagt
tgggggtcaccaccatataaggaactggtatttaaggatgaactatattt
taggatggcagcattagaaaggttgagagccctctgctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_23680192_23680392
seq2: B6Ng01-229F20.b_52_246 (reverse)

seq1  GAGAGAGAGACAGGGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50
      ||||||||||      ||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGA------GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  44

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAG  94

seq1  ACTGGACATTGTCCATTTTCCAGAGGGTTCCAGACCTTAATCAGAGCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACATTGTCCATTTTCCAGAGGGTTCCAGACCTTAATCAGAGCACT  144

seq1  GGCTAATCCTAAGTCTCCCTCTTCCATTCCTCAGGCAAAATGTCCCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATCCTAAGTCTCCCTCTTCCATTCCTCAGGCAAAATGTCCCTGGA  194

seq1  T  201
      |
seq2  T  195

seq1: chr12_23496825_23497709
seq2: B6Ng01-229F20.g_68_958

seq1  GAATTCTGATGTCACCTCTGTAATGCTCGGTCAGGACAGCCCCTTCTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATGTCACCTCTGTAATGCTCGGTCAGGACAGCCCCTTCTCTA  50

seq1  AGGTGCCTGTGGGAATCTCTGGGGCATGTTTTCAGATCTTAAAAGATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCCTGTGGGAATCTCTGGGGCATGTTTTCAGATCTTAAAAGATTCT  100

seq1  ATGCACACACACTGTTGAAGCTGAATTGCCTGGGAAGTCACAGACTGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACACACTGTTGAAGCTGAATTGCCTGGGAAGTCACAGACTGAGT  150

seq1  TGTCTTTGTTCCTGCTAAGTGACTCATGGGTGCCCTTTAAAAGAGAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTGTTCCTGCTAAGTGACTCATGGGTGCCCTTTAAAAGAGAATGT  200

seq1  AACAGACATGTTCTGATGGGGAAAACACATGAAGAATGCAGCTGCTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACATGTTCTGATGGGGAAAACACATGAAGAATGCAGCTGCTGTTT  250

seq1  CCCAAACAGCCATCAGCCCATCTACTTTAGGCCAATGAGGGGAAACGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACAGCCATCAGCCCATCTACTTTAGGCCAATGAGGGGAAACGCAC  300

seq1  CCAAAGATCCCAGTTGACCTTCCCCATGAGCATCTTGTGTCCTGGTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGATCCCAGTTGACCTTCCCCATGAGCATCTTGTGTCCTGGTCCTG  350

seq1  GGCCCAGAGTGGGGGTGGGGGATAAAGAGCCTGGCCTTGGTGGCAAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGAGTGGGGGTGGGGGATAAAGAGCCTGGCCTTGGTGGCAAAGGG  400

seq1  AAACAGCTTTCCCAGGGCTATTTAGAAAAGATGCTGTGTCTACAGTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTTTCCCAGGGCTATTTAGAAAAGATGCTGTGTCTACAGTCTGC  450

seq1  TGTGCTTGTAGGCGAATCACTTTCTGTAGCAGGATAATAGATAATCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGTAGGCGAATCACTTTCTGTAGCAGGATAATAGATAATCCTGA  500

seq1  GTCCCCTTATGGAACATTTACTATATGTACAACACAGTTCTTTGCGTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTTATGGAACATTTACTATATGTACAACACAGTTCTTTGCGTTGT  550

seq1  ACAACCAAGTTTCCTAGCCTCCCAAAGAAAGAACCAGGGCTCATTAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAAGTTTCCTAGCCTCCCAAAGAAAGAACCAGGGCTCATTAAGTG  600

seq1  -TTAGAGAC-TTTCCAGGGTCACATAGAGGATGTCTCTGT-GGGGACAAC  647
       |||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  TTTAGAGACTTTTCCAGGGTCACATAGAGGATGTCTCTGTGGGGGACAAC  650

seq1  CAGGCAGCTAGATGCAGTGCCTATCTAGAGTAGCAGGTCTCAACCTGTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGCTAGATGCAGTGCCTATCTAGAGTAGCAGGTCTCAACCTGTGG  700

seq1  G-TCATAACCCATTTGGCAAACCTCTATCTCCAAAAATATTTACACTACA  746
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAACCCATTTGGCAAACCTCTATCTCCAAAAATATTTACACTACA  750

seq1  ATTTGCAACAGTAGAAAAAAATTAGTTATG-AAATAGCAACAAATATAGT  795
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATTTGCAACAGTAGAAAAAAATTAGTTATGAAAATAGCAACAAATATAGT  800

seq1  TGGGGGTCACCACCATATAAGGAACT-GTATTTAAGGGATGAACTATATT  844
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  TGGGGGTCACCACCATATAAGGAACTGGTATTTAA-GGATGAACTATATT  849

seq1  TAAGGATGGCAGCATTAGGAAGGTTGAGAG-CCACTGCTCTA  885
      | |||||||||||||||| ||||||||||| || ||||||||
seq2  TTAGGATGGCAGCATTAGAAAGGTTGAGAGCCCTCTGCTCTA  891