BAC Information

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BAC

Clone NameB6Ng01-231B05
Chromosome12 (Build37)
Map Location 50,304,366 - 50,305,586
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036
Downstream geneLOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424, LOC665071, LOC665077, LOC100039455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231B05.bB6Ng01-231B05.g
ACCGA043773GA043774
length1,2061,171
definitionB6Ng01-231B05.b B6Ng01-231B05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaagctcaccataggcttcaaggatattctaggaaccattggaa
cactggtggaggcttagctatgtcaaaatcaatccttaaaggcacttata
ataaaacaatactgaaagagagcacatggatccatacaacagactaactc
gcagggacagggtttgagtatatgggatatgggaatgcaaagattcctgg
aggcaaaatttctttgaaactcttctcctagtgactgctttcagaccctt
aggcctaccaagcagactgcactggagtggacgtagcattcacacccttt
cttttattatttttcagccaaagttccagaatgccccacttcattttagc
tacagatctcagaactctaaagatgagtggaaacacaatgattactaata
aaataatgccaataataatagcaagtacgattatatattgaacccaatcc
aagggattcaatgcacttaggttatttttcaaatctctggccaattcatc
aatgttccaagtgtccaaatgacttctgctaatatctgcaatttctgcct
ttatagccttaatatttgctataccctgccctattgctaaaactacttct
tctaaagtgctagcctttacatccaatattttttatctataatatgaagc
tctgacaaagccatggaaatattcctatgcatatcattaacaaaatgagc
catatgcagctgctgaactaaagctgtggtagataatgcaaaagatatta
aaattgcaattaaagcagtaacaaatctctttggtctaataagctcattt
aatcttttcaaagtttgcattcccgaatttttaaaccaaggatcattttt
taactcaacaggcagcaaaacataaacaggtctctttaacaaaatcataa
cagcagattcctcatctaaattaggatctacacaattagttaattgacaa
gaattacagtgaatatgaaaagactttccaagattggtgatcttacctct
gtcaaacttatctaacatatagcatagggtaggtacacaggtttcacagc
tatgtagcacccatctttgcatcttcatcactttatttctccatggtccc
tgagcttagagaaaaaatataatgagaactcagcctgttcccttgttctt
caccattgattctatgactggcttgaccaggtcattgtaaggagagaacc
ttttct
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agctccaaatgctgacaccattgcatacactagcaagattttactgaaag
gacccagatgtagctgtctcttgtgagactatgccggggcctagcaaaca
cagagtggatgctcacaagtcagctgaatggaatggatcagaggcctccc
gatggagaagctgaagaaagtcccgaagcaactaaaaggcatctcacccc
taataggtgcaacatcatgatgaaccaactagtaccgctgagcctcatgc
ttcagctgcctatgtcacaaaaagatcgtcttggcgctatcgtgaaagaa
gtacctctgtggaaaccgagacttatgtgcccctgatgacgggagacccg
ggccaagggggagaatttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_50304366_50305586
seq2: B6Ng01-231B05.b_44_1249

seq1  GAATTCCAAGCTCACCATAGGCTTCAAGGATATTCTAGGAACCATTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCTCACCATAGGCTTCAAGGATATTCTAGGAACCATTGGAA  50

seq1  CACTGGTGGAGGCTTAGCTATGTCAAAATCAATCCTTAAAGGCACTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTGGAGGCTTAGCTATGTCAAAATCAATCCTTAAAGGCACTTATA  100

seq1  ATAAAACAATACTGAAAGAGAGCACATGGATCCATACAACAGACTAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACAATACTGAAAGAGAGCACATGGATCCATACAACAGACTAACTC  150

seq1  GCAGGGACAGGGTTTGAGTATATGGGATATGGGAATGCAAAGATTCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGACAGGGTTTGAGTATATGGGATATGGGAATGCAAAGATTCCTGG  200

seq1  AGGCAAAATTTCTTTGAAACTCTTCTCCTAGTGACTGCTTTCAGACCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAATTTCTTTGAAACTCTTCTCCTAGTGACTGCTTTCAGACCCTT  250

seq1  AGGCCTACCAAGCAGACTGCACTGGAGTGGACGTAGCATTCACACCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTACCAAGCAGACTGCACTGGAGTGGACGTAGCATTCACACCCTTT  300

seq1  CTTTTATTATTTTTCAGCCAAAGTTCCAGAATGCCCCACTTCATTTTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTATTTTTCAGCCAAAGTTCCAGAATGCCCCACTTCATTTTAGC  350

seq1  TACAGATCTCAGAACTCTAAAGATGAGTGGAAACACAATGATTACTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATCTCAGAACTCTAAAGATGAGTGGAAACACAATGATTACTAATA  400

seq1  AAATAATGCCAATAATAATAGCAAGTACGATTATATATTGAACCCAATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGCCAATAATAATAGCAAGTACGATTATATATTGAACCCAATCC  450

seq1  AAGGGATTCAATGCACTTAGGTTATTTTTCAAATCTCTGGCCAATTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATTCAATGCACTTAGGTTATTTTTCAAATCTCTGGCCAATTCATC  500

seq1  AATGTTCCAAGTGTCCAAATGACTTCTGCTAATATCTGCAATTTCTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCCAAGTGTCCAAATGACTTCTGCTAATATCTGCAATTTCTGCCT  550

seq1  TTATAGCCTTAATATTTGCTATACCCTGCCCTATTGCTAAAACTACTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCCTTAATATTTGCTATACCCTGCCCTATTGCTAAAACTACTTCT  600

seq1  TCTAAAGTGCTAGCCTTTACATCCAATATTTTTTATCTATAATATGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGTGCTAGCCTTTACATCCAATATTTTTTATCTATAATATGAAGC  650

seq1  TCTGACAAAGCCATGGAAATATTCCTATGCATATCATTAACAAAATGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAAAGCCATGGAAATATTCCTATGCATATCATTAACAAAATGAGC  700

seq1  CATATGCAGCTGCTGAACTAAAGCTGTGGTAGATAATGCAAAAGATATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCAGCTGCTGAACTAAAGCTGTGGTAGATAATGCAAAAGATATTA  750

seq1  AAATTGCAATTAAAGCAGTAACAAATCTCTTTGGTCTAATAAGCTCATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCAATTAAAGCAGTAACAAATCTCTTTGGTCTAATAAGCTCATTT  800

seq1  AATCTTTTCAAAGTTTGCATTCCCGAATTTTTAAACCAAGGATCATTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTCAAAGTTTGCATTCCCGAATTTTTAAACCAAGGATCATTTTT  850

seq1  TAACTCAACAGGCAGCAAAACATAAACAGGTCTCTTTAACAAAATCATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCAACAGGCAGCAAAACATAAACAGGTCTCTTTAACAAAATCATAA  900

seq1  CAGCAGATTCCTCATCTAAATTAGGATCTACACAATTAGTTAATTGACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGATTCCTCATCTAAATTAGGATCTACACAATTAGTTAATTGACAA  950

seq1  GAATTACAGTGAATATGAAAAGACTTTCCAAGATTGGTGATCTTACCTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACAGTGAATATGAAAAGACTTTCCAAGATTGGTGATCTTACCTCT  1000

seq1  GTCAAAACTTATCTAACAATATAGCATAGGGGTAAGGTACACAGGTTTCA  1050
      ||| ||||||||||||| |||||||||||||   ||||||||||||||||
seq2  GTC-AAACTTATCTAAC-ATATAGCATAGGG--TAGGTACACAGGTTTCA  1046

seq1  CAGCTATGTAGCACCCATCTTTGCATTCTTTTCATTCACTTTATTTCT-C  1099
      |||||||||||||||||||||||||   | |||| ||||||||||||| |
seq2  CAGCTATGTAGCACCCATCTTTGCA---TCTTCA-TCACTTTATTTCTCC  1092

seq1  ATGTTCCCTGAGCCTTAGAGGAAAAAATATAAATGAGAACTCAG-CTG-T  1147
      ||| |||||||| |||||| |||||||||| ||||||||||||| ||| |
seq2  ATGGTCCCTGAG-CTTAGA-GAAAAAATAT-AATGAGAACTCAGCCTGTT  1139

seq1  CCCTTGTCCTCAACCCCTTGGATATCTATGAAACTTTGCCTTTGACACAG  1197
      |||||||  ||  | || | ||| |||||||     || | ||||| |||
seq2  CCCTTGT--TCTTCACCATTGAT-TCTATGA----CTGGC-TTGAC-CAG  1180

seq1  TTCATTGTAA--AGAGAACCTTTTCT  1221
       |||||||||  ||||||||||||||
seq2  GTCATTGTAAGGAGAGAACCTTTTCT  1206