BAC Information

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BAC

Clone NameB6Ng01-231H06
Chromosome12 (Build37)
Map Location 116,844,344 - 116,845,276
singlet/doubletsinglet
Overlap geneIgh
Upstream geneIghv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328
Downstream geneIghv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, Ptprn2, LOC627375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231H06.bB6Ng01-231H06.g
ACCGA044053GA044054
length1,0071,201
definitionB6Ng01-231H06.b B6Ng01-231H06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatctcctcttttccattactaataagaatccatgtgaagtcctg
tgaattgtcagttcacagggtaacatcctcagggtattagtgaattctga
caatgcctactatccagaggactagcttgttttatcttgacattccagaa
ctcctgaagagagagtaatgctgggtaatatcaataatgctgttcttcat
acttcaatcatgaaatgctgatggagctcatagtgtgcaatgcacaggag
ttcatgcctccttaagtagacatcctccccttttctttttatgtgtttta
tatagaactttttatttaaaacttagatacatttaaaataagttagcttt
tatcagaaaaatactgttcaaatcatgttattctatcacaaactggaagc
tagttatttttaatgactttttatctttttttatattttttcattagatg
ttttcttcatttacattccaaatgttatcccctttcctagtttcctctct
gaaaataccctataccctttcccctccccctgctccacaaccaacccact
tccacttcctgtcccttgcattcccctatactggggcctagaatgttcga
aagaccaaggatctcttctcccactggtagccaactaggccatcctctgc
tacatatgcagctagagacatgagctctggacatattggttagttcatat
tgtttctcagataggtctgcagaccacttcagctccttgggtactttctc
tagctccttaattgggtaccctgtgttccatctaatagatgactgtgagc
atccacttctgtatttgttaggcactggcatagcctcacaggatacagct
atatcaggtcttgtcagcaaaatcttgtttttatatacaatagtgactgg
ggtttggtggttgtttactacggtatggattcccaggtggggcagtctca
agatgttccttcgttcagtctcagctccgaactttgtctctgtaactcca
tccatgg
gaattcaacagattgggaaaagatttttactcaacctgcaacttataagg
ggctaataaccaatatgtacaaagaactcaagaagttaggctccagagaa
ccaaataaccctattaaaaatgttgtaaagaactaaacatagaattctca
agtgaggaatatcaattggacaaaatgaaattaaagaaatgttcaacatc
tttattcatcagggaattgcaaatagaaacaaccctgagattccacctca
cacccgtcagaattgctaagattaaatactcaagtgatagtagatgctga
tgagcatgtggagaaagaggaaaactcctccaatgccagtgggattacaa
gctggtatcataactatagaaatcagtctgacagttcctcagaaaacttg
acatagtaacacctgaggacctagcaatacaatttttgggcatatgccaa
gaagatgctccaatatgtaataagggttcatgctccactatgttcataga
agccatatttataatgacttggatctagaaagaacctagatgttcttaaa
caaaggaatggattcagaaaatatgggacatttacagaatgtagtactat
tttgctattaaaaatgatgaattcatgaaattctcatgtaaatggataga
attagaaaatatcatcctgagtgaggtaacccaatcacaaaagaaacatt
gtatgaactcactgataactggatattagcctaaaagggccaaataacca
ggatacaattcatagaccccatgaagctcattaagaaggaagatcaaagt
atggatgcttcggtcctttcttacaaggagaacaaaatactcacaggaga
aaatatggagataaagttatagaacagagaatgaaagagaggccacccag
ggatggtcccacctggggattcatcaacatacataggttaccaaacccag
accacttttgtggatgcccagaattgggatgtgaaagtagcctgatattg
actgtctcctgagaggccatgccagagccttacaaatacagaagggtgat
tgtcacagttatcatttttacttgaaccactggtttcccacagagagttg
agaaaggactggaaccagtacatagtggcaccccataggattaacacaat
tagcactgagcctcagactccaggactatttcattcaatgcagagatata
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_116844344_116845276
seq2: B6Ng01-231H06.b_44_975

seq1  GAATTCATCTCCTCTTTTCCATTACTAATAAGAATCCATGTGAAGTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCCTCTTTTCCATTACTAATAAGAATCCATGTGAAGTCCTG  50

seq1  TGAATTGTCAGTTCACAGGGTAACATCCTCAGGGTATTAGTGAATTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGTCAGTTCACAGGGTAACATCCTCAGGGTATTAGTGAATTCTGA  100

seq1  CAATGCCTACTATCCAGAGGACTAGCTTGTTTTATCTTGACATTCCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCTACTATCCAGAGGACTAGCTTGTTTTATCTTGACATTCCAGAA  150

seq1  CTCCTGAAGAGAGAGTAATGCTGGGTAATATCAATAATGCTGTTCTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAAGAGAGAGTAATGCTGGGTAATATCAATAATGCTGTTCTTCAT  200

seq1  ACTTCAATCATGAAATGCTGATGGAGCTCATAGTGTGCAATGCACAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATCATGAAATGCTGATGGAGCTCATAGTGTGCAATGCACAGGAG  250

seq1  TTCATGCCTCCTTAAGTAGACATCCTCCCCTTTTCTTTTTATGTGTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCCTCCTTAAGTAGACATCCTCCCCTTTTCTTTTTATGTGTTTTA  300

seq1  TATAGAACTTTTTATTTAAAACTTAGATACATTTAAAATAAGTTAGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAACTTTTTATTTAAAACTTAGATACATTTAAAATAAGTTAGCTTT  350

seq1  TATCAGAAAAATACTGTTCAAATCATGTTATTCTATCACAAACTGGAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAAAAATACTGTTCAAATCATGTTATTCTATCACAAACTGGAAGC  400

seq1  TAGTTATTTTTAATGACTTTTTATCTTTTTTTATATTTTTTCATTAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATTTTTAATGACTTTTTATCTTTTTTTATATTTTTTCATTAGATG  450

seq1  TTTTCTTCATTTACATTCCAAATGTTATCCCCTTTCCTAGTTTCCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCATTTACATTCCAAATGTTATCCCCTTTCCTAGTTTCCTCTCT  500

seq1  GAAAATACCCTATACCCTTTCCCCTCCCCCTGCTCCACAACCAACCCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACCCTATACCCTTTCCCCTCCCCCTGCTCCACAACCAACCCACT  550

seq1  TCCACTTCCTGTCCCTTGCATTCCCCTATACTGGGGCCTAGAATGTTCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCCTGTCCCTTGCATTCCCCTATACTGGGGCCTAGAATGTTCGA  600

seq1  AAGACCAAGGATCTCTTCTCCCACTGGTAGCCAACTAGGCCATCCTCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAAGGATCTCTTCTCCCACTGGTAGCCAACTAGGCCATCCTCTGC  650

seq1  TACATATGCAGCTAGAGACATGAGCTCTGGACATATTGGTTAGTTCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATGCAGCTAGAGACATGAGCTCTGGACATATTGGTTAGTTCATAT  700

seq1  TGTTTCTCAGATAGGTCTGCAGACCACTTCAGCTCCTTGGGTACTTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCAGATAGGTCTGCAGACCACTTCAGCTCCTTGGGTACTTTCTC  750

seq1  TAGCTCCTTAATTGGGTACCCTGTGTTCCATCTAATAGATGACTGTGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCTTAATTGGGTACCCTGTGTTCCATCTAATAGATGACTGTGAGC  800

seq1  ATCCACTTCTGTATTTGTTAGGCACTGGCATAGCCTCACAGGATACAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTTCTGTATTTGTTAGGCACTGGCATAGCCTCACAGGATACAGCT  850

seq1  ATATCAGGGTCTTGTCAGCAAAATCTTGTTTTTATATACAATAGTGACTG  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCA-GGTCTTGTCAGCAAAATCTTGTTTTTATATACAATAGTGACTG  899

seq1  GGGTTTGGTGGTTGTTTACTACGGTATGGATTC  933
      |||||||||||||||||||||||||||||||||
seq2  GGGTTTGGTGGTTGTTTACTACGGTATGGATTC  932