BAC Information

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BAC

Clone NameB6Ng01-231J03
Chromosome12 (Build37)
Map Location 32,729,666 - 32,863,858
singlet/doubletdoublet
Overlap genePrkar2b, Pik3cg
Upstream gene9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1
Downstream gene2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231J03.bB6Ng01-231J03.g
ACCGA044136GA044137
length1,1241,020
definitionB6Ng01-231J03.b B6Ng01-231J03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,729,666 - 32,730,787)(32,862,850 - 32,863,858)
sequence
gaattcagagaaggctgaaaagcaagatagttcacaaaatagaagccatc
agttaaaagcaggaagcaatgagaccgattttcaaaatgcatagacactg
tcttcatttctgagcatgttgctgtaagagacattccaagctaaacaaat
atgaactgggttgtggtctgtggtcacatgcacacacacacacacacaca
cacacacacacacacacacacacacacacacacaaacgtgcacacgccac
acacaaacaaaaggccacttcatttgtactagaattacattagataaatg
tgccttttgcagaaaagtgttcatatgccctggagtaaaatatctccaac
cctattagaatccataaaacaattagcatctctgtcttcatattagttgc
ttttttgttgttgctttagaaatagaaactttttttagtctgttagctgc
ctaaataaaagattgagaaaattgtaaattaaaatgcataaactaattat
ttttgacagaatactcagttcagaataaattaacttatgcctgtttcaaa
aattatataaaggaaaatttactcttgaaccaagaaagaactaaaatttt
aaaagttcaacagcaaacaagcaagtaaatgaccccaaaacataaatatt
tcaccatttagcaaagaatacatatactttgcatgtgtttaattcttggt
cctgaaaatataatttattttccataatcctatgcaaagccggtgggtct
ccaagatgctcattacagtcccacacgcccttgcactggcctccagcggg
gagcgccagagcagaatcacaactggagggccttcaaaccctaactgctt
ggccctaagcgacatggattataaaccacgtacctcagagtacatcttgg
ccttagttggggctgtgtgagaggtgggcatctgagggcccgtggctttt
ctttttgctgacacagcaagagggacaatagagcaagtgtgcatctaacc
tacttcacatggattgtcgatggaggtaggacagggtcaaatacggtgct
ttagcttctagaaccgttccacgtgaatgatcacaaaacacatacatttt
gttctacttataaaccaaatacct
gaattctacagtttcttttatttttaagatttatttatttatttattttc
tatatcggagtacactgtcattctcttcaatcggatccattgcagatgat
tgtgagccaccatgcagttgctgagaattgaacttgctggaagagcagca
gtcagtgctcttaaccactgagccatctctccagccccatcctacagttt
ctttcagtgggttctccacaagtttgtgatgtgtttattctaggtatagc
attcatcttgttatcaatattcacagcagctgttgtttttgtttttcatg
atacttgccaactggtggcgactatttaaattattttttcatttcttact
atctgtttttataaaaacatttgcatgagtggatagatggtttagttgga
aagcacttgctgcaggagactgaggatgcagttcagcccctagcacccac
ataaaagatgatcatggtggcacaagcccatgacttcccagggctgagga
ggaagagttggatggattctagcgtctgctggccaactggtctagatgaa
ttgctgagcctcaggacccaagagagactgtctcaagcaataaggctgca
agggactgaggaagccacccaaggtcttgacactgatatctggcctctac
atgcatacacaaatacacaaaacataatttactaaaagctaattataata
atatttgaattttctttccctcagagatccaagaaaatgaacatttttac
atcctagtcattttatctccacttttctgactttatacttcatttctttt
tctattttttttttaattttctggcatttaaaattttttaaattattttt
ataaaatccagtacttcacactattacattttaatgtcatattcattttc
atagtttaataaaaaatcacaaatgggatgctttttggtgactatagtta
tggtcagaaaatcttaaagtgtgaggcaatagatcctattagtatgggtg
tagggaggggttttgggtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32729666_32730787
seq2: B6Ng01-231J03.b_44_1167

seq1  GAATTCAGAGAAGGCTGAAAAGCAAGATAGTTCACAAAATAGAAGCCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAAGGCTGAAAAGCAAGATAGTTCACAAAATAGAAGCCATC  50

seq1  AGTTAAAAGCAGGAAGCAATGAGACCGATTTTCAAAATGCATAGACACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAGCAGGAAGCAATGAGACCGATTTTCAAAATGCATAGACACTG  100

seq1  TCTTCATTTCTGAGCATGTTGCTGTAAGAGACATTCCAAGCTAAACAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTTCTGAGCATGTTGCTGTAAGAGACATTCCAAGCTAAACAAAT  150

seq1  ATGAACTGGGTTGTGGTCTGTGGTCACATGCACACACACACACACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTGGGTTGTGGTCTGTGGTCACATGCACACACACACACACACACA  200

seq1  CACACACACACACACACACACACACACACACACAAACGTGCACACGCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACAAACGTGCACACGCCAC  250

seq1  ACACAAACAAAAGGCCACTTCATTTGTACTAGAATTACATTAGATAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAACAAAAGGCCACTTCATTTGTACTAGAATTACATTAGATAAATG  300

seq1  TGCCTTTTGCAGAAAAGTGTTCATATGCCCTGGAGTAAAATATCTCCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTTGCAGAAAAGTGTTCATATGCCCTGGAGTAAAATATCTCCAAC  350

seq1  CCTATTAGAATCCATAAAACAATTAGCATCTCTGTCTTCATATTAGTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTAGAATCCATAAAACAATTAGCATCTCTGTCTTCATATTAGTTGC  400

seq1  TTTTTTGTTGTTGCTTTAGAAATAGAAACTTTTTTTAGTCTGTTAGCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTGTTGCTTTAGAAATAGAAACTTTTTTTAGTCTGTTAGCTGC  450

seq1  CTAAATAAAAGATTGAGAAAATTGTAAATTAAAATGCATAAACTAATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAAAAGATTGAGAAAATTGTAAATTAAAATGCATAAACTAATTAT  500

seq1  TTTTGACAGAATACTCAGTTCAGAATAAATTAACTTATGCCTGTTTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACAGAATACTCAGTTCAGAATAAATTAACTTATGCCTGTTTCAAA  550

seq1  AATTATATAAAGGAAAATTTACTCTTGAACCAAGAAAGAACTAAAATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATAAAGGAAAATTTACTCTTGAACCAAGAAAGAACTAAAATTTT  600

seq1  AAAAGTTCAACAGCAAACAAGCAAGTAAATGACCCCAAAACATAAATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCAACAGCAAACAAGCAAGTAAATGACCCCAAAACATAAATATT  650

seq1  TCACCATTTAGCAAAGAATACATATACTTTGCATGTGTTTAATTCTTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATTTAGCAAAGAATACATATACTTTGCATGTGTTTAATTCTTGGT  700

seq1  CCTGAAAATATAATTTATTTTCCATAATCCTATGCAAAGCCGGTGGGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAATATAATTTATTTTCCATAATCCTATGCAAAGCCGGTGGGTCT  750

seq1  CCAAGATGCTCATTACAGTCCCACACGCCCTTGCACTGGCCTCCAGCGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATGCTCATTACAGTCCCACACGCCCTTGCACTGGCCTCCAGCGGG  800

seq1  GAGCGCCAGAGCAGAATCACAACTGGAGGGCCTTCAAACCCTAACTGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCCAGAGCAGAATCACAACTGGAGGGCCTTCAAACCCTAACTGCTT  850

seq1  GGCCCTAAGCGACATGGATTATAAACCACGTACCTCAGAGTACATCTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTAAGCGACATGGATTATAAACCACGTACCTCAGAGTACATCTTGG  900

seq1  CCTTAGTT-GGGCTGTGTGAGAGGTGGGCATCTGAGGG-CCGTGGC-TTT  947
      |||||||| ||||||||||||||||||||||||||||| ||||||| |||
seq2  CCTTAGTTGGGGCTGTGTGAGAGGTGGGCATCTGAGGGCCCGTGGCTTTT  950

seq1  CTTTTTGCTGACACAGCAAGAGGGAC-ATAGAGCAGGTGTGCATCTAACC  996
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  CTTTTTGCTGACACAGCAAGAGGGACAATAGAGCAAGTGTGCATCTAACC  1000

seq1  TAC-TCACATGGATTGTCGATGGAGGTAGGACAGGGTCAAATACGGGTGC  1045
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  TACTTCACATGGATTGTCGATGGAGGTAGGACAGGGTCAAATAC-GGTGC  1049

seq1  -TTAGCTTCTAGAA-CGTTCCAACGTGAATGATCACCAAAACACATACAA  1093
       ||||||||||||| |||||| ||||||||||||| |||||||||||| |
seq2  TTTAGCTTCTAGAACCGTTCC-ACGTGAATGATCA-CAAAACACATAC-A  1096

seq1  TTTTGTTCTACTTATTAAACCAAATACCT  1122
      |||||||||||||| ||||||||||||||
seq2  TTTTGTTCTACTTA-TAAACCAAATACCT  1124

seq1: chr12_32862850_32863858
seq2: B6Ng01-231J03.g_67_1086 (reverse)

seq1  TAAACCAAAACCC--TCCTACA-CCATACTAATAGGATCTAT--GCTCAC  45
      ||| |||||||||   |||||| |||||||||||||||||||   |||||
seq2  TAACCCAAAACCCCTCCCTACACCCATACTAATAGGATCTATTGCCTCAC  50

seq1  ACTTTAAGATTTTCTGACCATAACTATAGTCA-CAAAAAGCAT-CCATTT  93
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  ACTTTAAGATTTTCTGACCATAACTATAGTCACCAAAAAGCATCCCATTT  100

seq1  GTGATTTTT--ATAAACTATGAAAATGAATATGACATTAAAATGTAATAG  141
      |||||||||   ||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTTTTATTAAACTATGAAAATGAATATGACATTAAAATGTAATAG  150

seq1  TGTGAAGTACTGGATTTTATAAAAATAA-TTAAAAAATTTTAAATGCCAG  190
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGTGAAGTACTGGATTTTATAAAAATAATTTAAAAAATTTTAAATGCCAG  200

seq1  AAAATT-AAAAAAAAATAGAAAAAGAAATGAAGTATAAAGTCAGAAAAGT  239
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAAAAAAAAATAGAAAAAGAAATGAAGTATAAAGTCAGAAAAGT  250

seq1  GGAGATAAAATGACTAGGATGTAAAAATGTTCATTTTCTTGGATCTCTGA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAAAATGACTAGGATGTAAAAATGTTCATTTTCTTGGATCTCTGA  300

seq1  GGGAAAGAAAATTCAAATATTATTATAATTAGCTTTTAGTAAATTATGTT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGAAAATTCAAATATTATTATAATTAGCTTTTAGTAAATTATGTT  350

seq1  TTGTGTATTTGTGTATGCATGTAGAGGCCAGATATCAGTGTCAAGACCTT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATTTGTGTATGCATGTAGAGGCCAGATATCAGTGTCAAGACCTT  400

seq1  GGGTGGCTTCCTCAGTCCCTTGCAGCCTTATTGCTTGAGACAGTCTCTCT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCTTCCTCAGTCCCTTGCAGCCTTATTGCTTGAGACAGTCTCTCT  450

seq1  TGGGTCCTGAGGCTCAGCAATTCATCTAGACCAGTTGGCCAGCAGACGCT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCTGAGGCTCAGCAATTCATCTAGACCAGTTGGCCAGCAGACGCT  500

seq1  AGAATCCATCCAACTCTTCCTCCTCAGCCCTGGGAAGTCATGGGCTTGTG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCATCCAACTCTTCCTCCTCAGCCCTGGGAAGTCATGGGCTTGTG  550

seq1  CCACCATGATCATCTTTTATGTGGGTGCTAGGGGCTGAACTGCATCCTCA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGATCATCTTTTATGTGGGTGCTAGGGGCTGAACTGCATCCTCA  600

seq1  GTCTCCTGCAGCAAGTGCTTTCCAACTAAACCATCTATCCACTCATGCAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTGCAGCAAGTGCTTTCCAACTAAACCATCTATCCACTCATGCAA  650

seq1  ATGTTTTTATAAAAACAGATAGTAAGAAATGAAAAAATAATTTAAATAGT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTATAAAAACAGATAGTAAGAAATGAAAAAATAATTTAAATAGT  700

seq1  CGCCACCAGTTGGCAAGTATCATGAAAAACAAAAACAACAGCTGCTGTGA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACCAGTTGGCAAGTATCATGAAAAACAAAAACAACAGCTGCTGTGA  750

seq1  ATATTGATAACAAGATGAATGCTATACCTAGAATAAACACATCACAAACT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGATAACAAGATGAATGCTATACCTAGAATAAACACATCACAAACT  800

seq1  TGTGGAGAACCCACTGAAAGAAACTGTAGGATGGGGCTGGAGAGATGGCT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGAACCCACTGAAAGAAACTGTAGGATGGGGCTGGAGAGATGGCT  850

seq1  CAGTGGTTAAGAGCACTGACTGCTGCTCTTCCAGCAAGTTCAATTCTCAG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTAAGAGCACTGACTGCTGCTCTTCCAGCAAGTTCAATTCTCAG  900

seq1  CAACTGCATGGTGGCTCACAATCATCTGCAATGGATCCGATTGAAGAGAA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCATGGTGGCTCACAATCATCTGCAATGGATCCGATTGAAGAGAA  950

seq1  TGACAGTGTACTCCGATATAGAAAATAAATAAATAAATAAATCTTAAAAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTGTACTCCGATATAGAAAATAAATAAATAAATAAATCTTAAAAA  1000

seq1  TAAAAGAAACTGTAGAATTC  1009
      ||||||||||||||||||||
seq2  TAAAAGAAACTGTAGAATTC  1020