BAC Information

Click to search

BAC

Clone NameB6Ng01-231M22
Chromosome12 (Build37)
Map Location 35,540,202 - 35,541,288
singlet/doubletsinglet
Overlap genenone
Upstream geneFerd3l, Twist1, Hdac9
Downstream gene4921508M14Rik, Prps1l1, Snx13, Ahr, LOC100043575, LOC629758, LOC100043579
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231M22.bB6Ng01-231M22.g
ACCGA044305GA044306
length1,1981,075
definitionB6Ng01-231M22.b B6Ng01-231M22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagcccttcaaaggataataaatggaaaaatccaacaaaaagaga
gaaaccagtagccaacatcaaactaaatcgagagaaacttgaagcaatcc
cactaaaatcagggactagataaggctgcccattttctccctacctattc
aatatagtactcgaagtcctagccagagcaattagacaataaaaggagat
caaaagaataattggaaaggaagaaatcaaaatatcactatttacagatg
atatgatagtatataaaaatgccaccagagaactcctaagcctgataagc
aacttcagtgcagtagctggatataaaattagctcaaacaaaggataagc
aggctgagaaagaaattagggaaacaatacccttcacaatagtcacaaat
aatataaaataccttggtctgactctaactaaggaagtgagagatctgta
tgataagaacttcaagtctctaaagaaagaaattgatgatctcagaagat
ggaatgatctcccatgctcatggattggcaggattaatatagtaaaaatg
tccatcctgctgaaagcaatctacagattcaatgcaatccccatcaaaat
ccacctcaattcttcacagttagaaaaggcaatttgcaaattcatctgga
ataacaaaaaacctaggatagtaaaaactcttctctacagtaaaagaacc
ttcagtggaatcatcatcgctgaccttaagctgtactacagagcaattgt
gataaaactgcatggtactggtacagtgacagataggtagatcaagaaag
tagaattgaagacccataaatgaacccacacacatatggtcacttgatct
ttgacaaaggagctaaaaccatccagtggaaaaaagacagcattttcaac
aaatggtgctggctcacctgggcagttaacatgtagaagaatgtgaatcg
atccattcttatctccttgtacaaagctcagtctaagtggatcaggaact
ccacataaatcagagacactgaaacttacagaggagaagtagggaaagtc
ttcaaagatattgggcacagggaaatttttctgaacagaacagcaatgtt
tttgctgtaggatcaggatctacaatggacctcataaatgcaaagtcatg
atttaatagctgagtagtacctccacgtgtgtaaaatgttacacaaca
gaattccactctgaaaacagttttgcatagtagtatttttagcttctcaa
aactggcctgattctcctttcgctggatgaaaagaatcccctctgaaatt
tctaacgtagcaaacaaagttcggagaacatttctgattccagcaggtgg
tcacaggcatgaggttagggtgacagccagcagtgttgatgtcactcaga
atcctgccaagggcctagggatgggacactgttcgctgtgctgataactc
acaagtgatctttccttccttctgtgcagtccttgtagctaatttttacc
tctaacaattcatattcactttctattgcctcaaacagactgacacatgg
gtatccgatgctgtgttcaacccatgagttttgataatgtcaggcataag
tgcaactaaagtaggagttagaccctagctccaatagtcttggggtatca
gagacatagacaggtctttgtgggcacctaaaggctcatttatttcccta
gaagtcacttaataattttttatgaaaatatgcgtgatgctaataaataa
taattttctatccaactgaatcacacataatgtaggtaatactcagccac
ctcactgactaaaatggcaagcttcacagtaaagagtctgggacattatc
acagtcccacaccaaagacacaaagaagaacgtggtgcctgagagccagc
ccatccacaggaaacatctctgatgctcataagggtacaaggatccagaa
ccagggaggtgaacatcaaaatcaaagctaagtttcactctgggactgct
caagaagcagcacccaaggacttaaaaaagaagaagaactggatgacagg
agatatgcatatgtgcacagatatacacatatgtagatgcagctatctct
taaagaatacgtaagcaagcaaacaagagagcaaatgtaatgccacaaaa
attcagtgtgcttcccatggcacttccaaaagtcaaatggctcttcccag
gcatagtgacatgaagcattatggaaacaatgtgccttctattttctcta
taaaaaatcatttttcattatgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_35540202_35541288
seq2: B6Ng01-231M22.g_68_1142

seq1  GAATTCCACTCTGAAAACAGTTTTGCATAGTAGTATTTTTAGCTTCTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCTGAAAACAGTTTTGCATAGTAGTATTTTTAGCTTCTCAA  50

seq1  AACTGGCCTGATTCTCCTTTCGCTGGATGAAAAGAATCCCCTCTGAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCCTGATTCTCCTTTCGCTGGATGAAAAGAATCCCCTCTGAAATT  100

seq1  TCTAACGTAGCAAACAAAGTTCGGAGAACATTTCTGATTCCAGCAGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACGTAGCAAACAAAGTTCGGAGAACATTTCTGATTCCAGCAGGTGG  150

seq1  TCACAGGCATGAGGTTAGGGTGACAGCCAGCAGTGTTGATGTCACTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGCATGAGGTTAGGGTGACAGCCAGCAGTGTTGATGTCACTCAGA  200

seq1  ATCCTGCCAAGGGCCTAGGGATGGGACACTGTTCGCTGTGCTGATAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCCAAGGGCCTAGGGATGGGACACTGTTCGCTGTGCTGATAACTC  250

seq1  ACAAGTGATCTTTCCTTCCTTCTGTGCAGTCCTTGTAGCTAATTTTTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGATCTTTCCTTCCTTCTGTGCAGTCCTTGTAGCTAATTTTTACC  300

seq1  TCTAACAATTCATATTCACTTTCTATTGCCTCAAACAGACTGACACATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACAATTCATATTCACTTTCTATTGCCTCAAACAGACTGACACATGG  350

seq1  GTATCCGATGCTGTGTTCAACCCATGAGTTTTGATAATGTCAGGCATAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCGATGCTGTGTTCAACCCATGAGTTTTGATAATGTCAGGCATAAG  400

seq1  TGCAACTAAAGTAGGAGTTAGACCCTAGCTCCAATAGTCTTGGGGTATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTAAAGTAGGAGTTAGACCCTAGCTCCAATAGTCTTGGGGTATCA  450

seq1  GAGACATAGACAGGTCTTTGTGGGCACCTAAAGGCTCATTTATTTCCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATAGACAGGTCTTTGTGGGCACCTAAAGGCTCATTTATTTCCCTA  500

seq1  GAAGTCACTTAATAATTTTTTATGAAAATATGCGTGATGCTAATAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCACTTAATAATTTTTTATGAAAATATGCGTGATGCTAATAAATAA  550

seq1  TAATTTTCTATCCAACTGAATCACACATAATGTAGGTAATACTCAGCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCTATCCAACTGAATCACACATAATGTAGGTAATACTCAGCCAC  600

seq1  CTCACTGACTAAAATGGCAAGCTTCACAGTAAAGAGTCTGGGACATTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGACTAAAATGGCAAGCTTCACAGTAAAGAGTCTGGGACATTATC  650

seq1  ACAGTCCCACACCAAAGACACAAAGAAGAACGTGGTGCCTGAGAGCCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCCACACCAAAGACACAAAGAAGAACGTGGTGCCTGAGAGCCAGC  700

seq1  CCATCCACAGGAAACATCTCTGATGCTCATAAGGGTACAAGGATCCAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCACAGGAAACATCTCTGATGCTCATAAGGGTACAAGGATCCAGAA  750

seq1  CCAGGGAGGTGAACATCAAAATCAAAGCTAAGTTTCACTCTGGGACTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGGTGAACATCAAAATCAAAGCTAAGTTTCACTCTGGGACTGCT  800

seq1  CAAGAAGCAGCACCCAAGGACTTAAAAAAGAAGAAGAACTGGATGACAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGCAGCACCCAAGGACTTAAAAAAGAAGAAGAACTGGATGACAGG  850

seq1  AGATATGCATATGTGCACAGATATACACATATGTAGATGCAGCTATCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGCATATGTGCACAGATATACACATATGTAGATGCAGCTATCTCT  900

seq1  TAAAGAATAACGTAAGCAAGCAAACAAGAGAGCAAAATGTAATGCCACAA  950
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  TAAAGAAT-ACGTAAGCAAGCAAACAAGAGAGC-AAATGTAATGCCACAA  948

seq1  AAATTCAGTGTGCTTCCCATGGCAACTTCCAAAAGTCAAATGGCTCTTCC  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAATTCAGTGTGCTTCCCATGGC-ACTTCCAAAAGTCAAATGGCTCTTCC  997

seq1  CA-GCATAAGTGACATGAAAGCATTTATGGAAACATGTTGCCTTCTATTT  1049
      || |||| ||||||||| ||||| |||||||||||   ||||||||||||
seq2  CAGGCAT-AGTGACATG-AAGCA-TTATGGAAACAATGTGCCTTCTATTT  1044

seq1  TCTCTATAAAAAAAAATCATTTTTTCCATTTTATGTTT  1087
      |||||||   ||||||||||||||  ||  ||||||||
seq2  TCTCTAT---AAAAAATCATTTTT--CA--TTATGTTT  1075