BAC Information

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BAC

Clone NameB6Ng01-231P17
Chromosome12 (Build37)
Map Location 63,503,566 - 63,504,641
singlet/doubletsinglet
Overlap genenone
Upstream geneNanog-ps2, Lrfn5, LOC665699, LOC665707, LOC100040403, LOC665713, LOC622746
Downstream geneLOC100040438, 1700047L15Rik, Tspyl-ps, EG665741, EG382606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231P17.bB6Ng01-231P17.g
ACCGA044435GA044436
length1,2131,078
definitionB6Ng01-231P17.b B6Ng01-231P17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccttcgcctaggacgtgtcactccctgattggctgcagcccat
cggccgagttgacgtcacggggaaggcagagcacatggagtgaagaacca
ccctcggcacatgcgcagattatttgtttaccacttagaacacagctgtc
agcgccatcttgtaacggcgaatgtgggcgcggctcccaacatgcatcaa
aatttgcttcaaagaatcaatccagcaaaatggaagaatgaggaggagaa
ggaaaaagaccatggtttatttggattttcacctgttacaagttttagaa
ctaaaattacaatttcttccacatttctgccttagttagcatttccattg
ctatgaagagacaccatgaacagggcaactcttaccaagaacactatgca
attgaatcttgccttacacattttcagagatttagttcattgtcatatgg
cagagggtggaacagtgtccaggcagtcatggcgctggaactgagggttc
tacatattgatccacaggcatcattgtgtataacccgagcggcagagacc
tcagtgctcatggccacagtaacacatttcctccaacaaggccacacctg
ttccaacaaggccacatttcttaatagtgccacttcttgtgccaaagcat
tcaaactcatgagtctatggggaccatgcctgcttaaaccatcacagttt
cataccaagtggttgggaggacattcatgattgtcagatgccttaggtaa
attcctatctccaccttagtatccccaaatcagataaacccattgtgcta
atctcatcaatcacataggatgtcttatatatctcctacaatgccctcct
gtcaatactgttcactcaagacacaccagaaggctttcctctttccaaat
atacctattattctctccttgtttctggtctctgttcagagtaggtggta
gaggctgatacttctttggtttgctgttgttgttttcttccaatcaaatt
tcatatacattctgatcacaccaatcatcccatttcttttttctattcta
ccattgcaatctctccctcattacccctcccccttctccgcagagaagtg
agcctaggcgataccactctacctgggacatctaggttctagcaagatag
caatgttttccttcactgagcctaacaggttagtcacagtttagcagaga
gggttattctcac

gaattcttttgtgttatcttgagaggtaaggaataaaaaacaaaacaaaa
caaaacaaaacaaaacaaactacagctctttgaatacagactaaaagaag
gatttgtgtctcatgaggctccttcttttcctttaaacttacttattttc
cacaataaattgacttctacaggtattataacattagaataaatctttgg
agtagatttacttacagcataaagactataaaatttaacggtttatgtta
ctcttcttgctcaattagtagctcaagaggacccaatgtcaagaattaca
tggatttgatcattgctgtattttactgcctttaactaacaattagtttc
taagatgtgttacagtagtctatggattttcaaatttcatctgcagatta
ctttgtaaggctaggaaatcattatccaggtggcacgctatggggttttc
tcctaggaactgaatttgtgattatctaatcttcatccattcaaggcaga
tgtttattttattgatggttcatctaagagtataacagagatttatggtc
cagatattcgtcaatctatcaatacttctttttcctcagcctaccaggtg
gaactgtctggattgactcatctattacagttaatccataaactcttaaa
tagtgtttcagattgtttttggttttggattatttacagcaatagagtta
tactcacaaacactctaacctctctgatcttattgtagtaggaaataaac
tagctgacacattaacctatccaatgttcacatgtctaaaagaaatctga
aaagggctatgtcattgcatgtggatttaccaaaacgttatagattcttt
ctttggttcctccagacctgagcatctagaatgatggtgggaggatgagg
agacaatggaggtcatcagaatatagcaaacctctataggagtacaatac
aagctactgaatacatcatcagctgacaagtctgcccacctagagcaagt
gcaaggcctatgaaattatggaagaagttatttcacaaaaccacacagaa
ccctacacttgcctgagattctcctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_63503566_63504641
seq2: B6Ng01-231P17.g_67_1144

seq1  GAATTCTTTTGTGTTATCTTGAGAGGTAAGGAATAAAAAACAAAACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTGTTATCTTGAGAGGTAAGGAATAAAAAACAAAACAAAA  50

seq1  CAAAACAAAACAAAACAAACTACAGCTCTTTGAATACAGACTAAAAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACAAAACAAACTACAGCTCTTTGAATACAGACTAAAAGAAG  100

seq1  GATTTGTGTCTCATGAGGCTCCTTCTTTTCCTTTAAACTTACTTATTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTGTCTCATGAGGCTCCTTCTTTTCCTTTAAACTTACTTATTTTC  150

seq1  CACAATAAATTGACTTCTACAGGTATTATAACATTAGAATAAATCTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAAATTGACTTCTACAGGTATTATAACATTAGAATAAATCTTTGG  200

seq1  AGTAGATTTACTTACAGCATAAAGACTATAAAATTTAACGGTTTATGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATTTACTTACAGCATAAAGACTATAAAATTTAACGGTTTATGTTA  250

seq1  CTCTTCTTGCTCAATTAGTAGCTCAAGAGGACCCAATGTCAAGAATTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTGCTCAATTAGTAGCTCAAGAGGACCCAATGTCAAGAATTACA  300

seq1  TGGATTTGATCATTGCTGTATTTTACTGCCTTTAACTAACAATTAGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTGATCATTGCTGTATTTTACTGCCTTTAACTAACAATTAGTTTC  350

seq1  TAAGATGTGTTACAGTAGTCTATGGATTTTCAAATTTCATCTGCAGATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGTGTTACAGTAGTCTATGGATTTTCAAATTTCATCTGCAGATTA  400

seq1  CTTTGTAAGGCTAGGAAATCATTATCCAGGTGGCACGCTATGGGGTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAAGGCTAGGAAATCATTATCCAGGTGGCACGCTATGGGGTTTTC  450

seq1  TCCTAGGAACTGAATTTGTGATTATCTAATCTTCATCCATTCAAGGCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGAACTGAATTTGTGATTATCTAATCTTCATCCATTCAAGGCAGA  500

seq1  TGTTTATTTTATTGATGGTTCATCTAAGAGTATAACAGAGATTTATGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTTTATTGATGGTTCATCTAAGAGTATAACAGAGATTTATGGTC  550

seq1  CAGATATTCGTCAATCTATCAATACTTCTTTTTCCTCAGCCTACCAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTCGTCAATCTATCAATACTTCTTTTTCCTCAGCCTACCAGGTG  600

seq1  GAACTGTCTGGATTGACTCATCTATTACAGTTAATCCATAAACTCTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTCTGGATTGACTCATCTATTACAGTTAATCCATAAACTCTTAAA  650

seq1  TAGTGTTTCAGATTGTTTTTGGTTTTGGATTATTTACAGCAATAGAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTTCAGATTGTTTTTGGTTTTGGATTATTTACAGCAATAGAGTTA  700

seq1  TACTCACAAACACTCTAACCTCTCTGATCTTATTGTAGTAGGAAATAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACAAACACTCTAACCTCTCTGATCTTATTGTAGTAGGAAATAAAC  750

seq1  TAGCTGACACATTAACCTATCCAATGTTCACATGTCTAAAAGAAATCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGACACATTAACCTATCCAATGTTCACATGTCTAAAAGAAATCTGA  800

seq1  AAAGGGCTATGTCATTGCATGTGGATTTACCAAAACGTTATAGATTC-TT  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGGGCTATGTCATTGCATGTGGATTTACCAAAACGTTATAGATTCTTT  850

seq1  CTTTGGTTCCTCCAGACCTGAGCAATCTAGAATGATGGT-GGAGGATGAG  898
      ||||||||||||||||||||||| ||||||||||||||| ||||||||||
seq2  CTTTGGTTCCTCCAGACCTGAGC-ATCTAGAATGATGGTGGGAGGATGAG  899

seq1  GAGACAATGGAAGTCATCAGAAATATAGCAAACCTCTATAAGAGTACAAT  948
      ||||||||||| |||||||| ||||||||||||||||||| |||||||||
seq2  GAGACAATGGAGGTCATCAG-AATATAGCAAACCTCTATAGGAGTACAAT  948

seq1  ACAAGCTACTGAATACATCATCAGCTGACAAGTCTGCCCACCTAGAGCAA  998
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACAAGCTACTGAATACATCATCAGCTGACAAGTCTGCCCACCTAGAGC-A  997

seq1  AGTGCAGGCCCTATGAAA-TATGGAAGAAGTTATTCAACAAAA-CACACA  1046
      |||||| | ||||||||| ||||||||||||||||  |||||| ||||||
seq2  AGTGCAAGGCCTATGAAATTATGGAAGAAGTTATTTCACAAAACCACACA  1047

seq1  GAACCCTACAC-TGCCTGAGAATCTCTTTTT  1076
      ||||||||||| ||||||||| |||| ||||
seq2  GAACCCTACACTTGCCTGAGATTCTCCTTTT  1078


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