BAC Information

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BAC

Clone NameB6Ng01-233D05
Chromosome12 (Build37)
Map Location 89,325,626 - 89,533,121
singlet/doubletdoublet
Overlap geneLOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093
Upstream geneZdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226
Downstream geneLOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233D05.bB6Ng01-233D05.g
ACCGA045332GA045333
length608393
definitionB6Ng01-233D05.b B6Ng01-233D05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,532,514 - 89,533,121)(89,325,626 - 89,326,024)
sequence
gaattccttctatccttccaccatgtggatctccagcatcctattccagt
tgtcaggcttggccatgagaggctttattctctgagccattatgctggcc
agtcatttaacatcttcatattattcaacgctttataaagaattctgttt
gtttcacatagatgcttcttctcatacagagagctgataacattcatctc
tttgccttgtttttgcacaaaggtaggacaaggctaaacaaagtgggggt
gtttgcatctatttgaaagatcaaatgtctttcttgccttcactagtggt
tgatgttacacctttctattataaagtattgcaaggtggttatggtttaa
tgttctcatttgtcttttcttttcttttttttcttttttctgtaaaaata
cttctttaaagggaacatttcagtgagacacagtgtcccacatataaaag
tcaagcactagaaacacataggcaggaggaccaggagtttaagggtagcc
ttggttacagaagactttgtgatggtttgaatatgcttggcctaggtagt
ggcactattagaaggtgttgccttgttggaagaactgtgtcactgtgtgg
gggagggg
cactctcctgtttgacttcttggagttgtgtgggaatgcactcatgaagc
agtaccaggtccagtactggaaaatgatgcttctcatccccgaggactac
ttgcccaggattgaagccatcacgagctcaggattgatggtctgtttcat
atgtctcaagcagttcttggagaaatgtctgcaatgcagggagatttctg
tccccagaggctttctgatgtttttggcttttctccttttgttgggcttg
atatctttcatcacactgtgtgggaggggcaacaataaagcaactgagac
agtgggtttggtagaatcttatcagattgaggaattcatcagtgtatttt
tatatatctgtacactgtgaatgagtctttaagggctggagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_89532514_89533121
seq2: B6Ng01-233D05.b_48_655 (reverse)

seq1  CCCCTCCCCCACACAGTGACACAGTTCTTCCAACAAGGCAACACCTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCCCACACAGTGACACAGTTCTTCCAACAAGGCAACACCTTCTA  50

seq1  ATAGTGCCACTACCTAGGCCAAGCATATTCAAACCATCACAAAGTCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGCCACTACCTAGGCCAAGCATATTCAAACCATCACAAAGTCTTCT  100

seq1  GTAACCAAGGCTACCCTTAAACTCCTGGTCCTCCTGCCTATGTGTTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCAAGGCTACCCTTAAACTCCTGGTCCTCCTGCCTATGTGTTTCTA  150

seq1  GTGCTTGACTTTTATATGTGGGACACTGTGTCTCACTGAAATGTTCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGACTTTTATATGTGGGACACTGTGTCTCACTGAAATGTTCCCTT  200

seq1  TAAAGAAGTATTTTTACAGAAAAAAGAAAAAAAAGAAAAGAAAAGACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGTATTTTTACAGAAAAAAGAAAAAAAAGAAAAGAAAAGACAAA  250

seq1  TGAGAACATTAAACCATAACCACCTTGCAATACTTTATAATAGAAAGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACATTAAACCATAACCACCTTGCAATACTTTATAATAGAAAGGTG  300

seq1  TAACATCAACCACTAGTGAAGGCAAGAAAGACATTTGATCTTTCAAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCAACCACTAGTGAAGGCAAGAAAGACATTTGATCTTTCAAATAG  350

seq1  ATGCAAACACCCCCACTTTGTTTAGCCTTGTCCTACCTTTGTGCAAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAACACCCCCACTTTGTTTAGCCTTGTCCTACCTTTGTGCAAAAAC  400

seq1  AAGGCAAAGAGATGAATGTTATCAGCTCTCTGTATGAGAAGAAGCATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAAGAGATGAATGTTATCAGCTCTCTGTATGAGAAGAAGCATCTA  450

seq1  TGTGAAACAAACAGAATTCTTTATAAAGCGTTGAATAATATGAAGATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAACAAACAGAATTCTTTATAAAGCGTTGAATAATATGAAGATGTT  500

seq1  AAATGACTGGCCAGCATAATGGCTCAGAGAATAAAGCCTCTCATGGCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTGGCCAGCATAATGGCTCAGAGAATAAAGCCTCTCATGGCCAA  550

seq1  GCCTGACAACTGGAATAGGATGCTGGAGATCCACATGGTGGAAGGATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACAACTGGAATAGGATGCTGGAGATCCACATGGTGGAAGGATAGA  600

seq1  AGGAATTC  608
      ||||||||
seq2  AGGAATTC  608

seq1: chr12_89325626_89326024
seq2: B6Ng01-233D05.g_70_468

seq1  GAATTCCACTCTCCTGTTTGACTTCTTGGAGTTGTGTGGGAATGCACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCTCCTGTTTGACTTCTTGGAGTTGTGTGGGAATGCACTCA  50

seq1  TGAAGCAGTACCAGGTCCAGTACTGGAAAATGATGCTTCTCATCCCCGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGTACCAGGTCCAGTACTGGAAAATGATGCTTCTCATCCCCGAG  100

seq1  GACTACTTGCCCAGGATTGAAGCCATCACGAGCTCAGGATTGATGGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACTTGCCCAGGATTGAAGCCATCACGAGCTCAGGATTGATGGTCTG  150

seq1  TTTCATATGTCTCAAGCAGTTCTTGGAGAAATGTCTGCAATGCAGGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATGTCTCAAGCAGTTCTTGGAGAAATGTCTGCAATGCAGGGAGA  200

seq1  TTTCTGTCCCCAGAGGCTTTCTGATGTTTTTGGCTTTTCTCCTTTTGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCCCCAGAGGCTTTCTGATGTTTTTGGCTTTTCTCCTTTTGTTG  250

seq1  GGCTTGATATCTTTCATCACACTGTGTGGGAGGGGCAACAATAAAGCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGATATCTTTCATCACACTGTGTGGGAGGGGCAACAATAAAGCAAC  300

seq1  TGAGACAGTGGGTTTGGTAGAATCTTATCAGATTGAGGAATTCATCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGTGGGTTTGGTAGAATCTTATCAGATTGAGGAATTCATCAGTG  350

seq1  TATTTTTATATATCTGTACACTGTGAATGAGTCTTTAAGGGCTGGAGAG  399
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATATATCTGTACACTGTGAATGAGTCTTTAAGGGCTGGAGAG  399