BAC Information

Click to search

BAC

Clone NameB6Ng01-234F04
Chromosome12 (Build37)
Map Location 4,839,374 - 4,976,427
singlet/doubletdoublet
Overlap geneFkbp1b, BC068281, Gm1964, Ubxd4, Atad2b
Upstream geneDnmt3a, LOC668289, Pomc1, C030014M07Rik, C330021A05Rik, Adcy3, Cenpo, 2410017P09Rik, Ncoa1, LOC100041995, LOC100042005, LOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik
Downstream geneLOC668332, Klhl29, 2810032G03Rik, LOC435292, LOC100042095, LOC672098
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234F04.bB6Ng01-234F04.g
ACCGA046121GA046122
length932812
definitionB6Ng01-234F04.b B6Ng01-234F04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,839,374 - 4,840,308)(4,975,617 - 4,976,427)
sequence
gaattcttctggtaaactagaacacatccgatgttacaaagtgttgccta
tgaaaacaagcctagaaccacgcttttttttttttttttcgaaaattggt
ccccagagtgagtgagtccaaggttccaagcctttaacatattcatgtgc
tcaggtgcacacacctccagtctagtgagggaggctcttccctcaatctc
ttcaaacataaaattgcacggccaccctgggaaatcaaatcccacatgga
attcctaggatgctgggttatttatgcaaaggactccgagctggtgagct
tagtagggtagaagctaacttccaaagttgcttagaggatttgtgataat
tttatttaaaaagtaaaactacacctggtagtaatctatatgcccctgta
ataccctcatcccttaggctggttagggagctctaggtcctcctgggctc
tgtcactctgtctaaaggttcaccacaggtctggctctctcactttgttc
atgaagctgttatatacattctcagccacttggaagtcccctttcaccct
ttttcaccaagggcagttggcttgtgtgtcattaaataacctcccacaac
acgatgaacaggaagacgcctagtacagagcctttattttacatattatt
tccccagggcagtgcttaaagtgagcagccaacagaagataataaatgac
agcaaacgtaactggctcacgtccctccatgtaaccatgttcagcacatg
tatgaataccttgtatgtctggcttaagtgcaagtaaggcaaaatagatt
gtgcaaacaagatctgtgtcctatgataaggaactgctactagatgcatc
acactaaatgtgcagtctgaaatgtctggatctgaactaggttttctcaa
gcaaaggtggtgtggagatgattaaaggctga
gaattcaatccatgaaactttaagtgaaacgattgtataacttttaaata
tgaattcagagccgtctatcacacagttaaagacatacaactgtgctcat
tcgcatttcaacataaagggaaaggcacacggagtaggacaagcagagac
aggcgaagagttcaaataggagcactcaccaacacatttttctgccaatt
ctcctaaaaatgcatcagacagttttgggttccagtccctggtgtggatc
tgcaagatgtgctttctggcctaagaagaagagtacagcggcgtaagaca
gcaccaacttctcatgggtttgctgtaacaaattctgactgtaaccccac
actaagctgttctctgttttaaaagaattttaaacaccttggcattcaca
tcaacctgtttgttataaaacctaagattttgggggctggagagatggtt
cagcagtcaagagcactggctgctcttccagaggtcctgagttcaattcc
cagcaaccacacggtggctcacaaccatgtaatggaatctgatgccctct
tcaggtgtgtctgaagacagtgacagtgtgctcacatatatacataaaaa
gaaaacttaaaaacagaaacaaaaaccctacaacttttatctctgtttca
tgagtttagacaattcatgttctaagaggtaaaaagaagcttcattagtg
acattaaatagtgaatcactaatgtgtgacaagaagctaaaactaaatgt
tacgttcctacatgcctccttttctattttatttattattagtggtggga
gggtagggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_4839374_4840308
seq2: B6Ng01-234F04.b_43_974

seq1  GAATTCTTCAAGGTAAACTAGAGCAAATCCAGATGTAACAAAGTGTTGCC  50
      |||||||||  ||||||||||| || |||| ||||| |||||||||||||
seq2  GAATTCTTC-TGGTAAACTAGAACACATCC-GATGTTACAAAGTGTTGCC  48

seq1  TATGAAAACAAGCCTAGAACCACACTTTTTTTTTTTTTTTTCAAAAATTG  100
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  TATGAAAACAAGCCTAGAACCACGCTTTTTTTTTTTTTTTTCGAAAATTG  98

seq1  GTCCCCAGAGTGAGTGAGTCCAAGGTTTCAAGCCTTTAACATATTCATGT  150
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTCCCCAGAGTGAGTGAGTCCAAGGTTCCAAGCCTTTAACATATTCATGT  148

seq1  GCTCAGGTGCACACAGCTCCTGTCTAGTGAGGGAGGCTCTTCCCTCAATC  200
      ||||||||||||||| |||| |||||||||||||||||||||||||||||
seq2  GCTCAGGTGCACACACCTCCAGTCTAGTGAGGGAGGCTCTTCCCTCAATC  198

seq1  TCTTCAAACATGAAATTGCAGGGCCACCCTGGGAGATCAAATCCCACATG  250
      ||||||||||| |||||||| ||||||||||||| |||||||||||||||
seq2  TCTTCAAACATAAAATTGCACGGCCACCCTGGGAAATCAAATCCCACATG  248

seq1  GAATTCCTAGGATGCTGGGTTATTTATGCAGAGGACTCCGAGCTGGTGAG  300
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAATTCCTAGGATGCTGGGTTATTTATGCAAAGGACTCCGAGCTGGTGAG  298

seq1  CTTAGTAGGGTAGAAGCTAACTTCCAAAGTTGCTTAGAGGATTTGTGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTAGGGTAGAAGCTAACTTCCAAAGTTGCTTAGAGGATTTGTGATA  348

seq1  ATTTTATTTAAAAAGTAAAACTAGACCTGGTAGTAATCTATATGCACCTG  400
      ||||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  ATTTTATTTAAAAAGTAAAACTACACCTGGTAGTAATCTATATGCCCCTG  398

seq1  TAATACCAGCAGCCAGGAGGCTGGCTAGGGAGCTCTAGGTCAGCCTGGGC  450
      |||||||  || ||   ||||||| ||||||||||||||||  |||||||
seq2  TAATACCCTCATCCCTTAGGCTGGTTAGGGAGCTCTAGGTCCTCCTGGGC  448

seq1  TCTGTCACTCTGTCTAAAGGTTCACCACAGGTCTGGCACGCGCAGTTTGT  500
      ||||||||||||||||||||||||||||||||||||| | | || |||||
seq2  TCTGTCACTCTGTCTAAAGGTTCACCACAGGTCTGGCTCTCTCACTTTGT  498

seq1  TCAGGAAGCTGTTATATACATTCTCAGCCACTTGGAAGTCCCCTTTCACT  550
      ||| ||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCATGAAGCTGTTATATACATTCTCAGCCACTTGGAAGTCCCCTTTCACC  548

seq1  CTTTTTCACCAAGGGCAGTTGGCTTGTGTGTCATTAAAGAACCTCCCACA  600
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTTTTTCACCAAGGGCAGTTGGCTTGTGTGTCATTAAATAACCTCCCACA  598

seq1  ACACGATGAACAGGAAGACGCCAAGTACAGAGCCTTTATTTTACATATTA  650
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACACGATGAACAGGAAGACGCCTAGTACAGAGCCTTTATTTTACATATTA  648

seq1  TTTCCAGAGGGCAGTGCTTAAAGTGAGCAGCCAACAGAAGATAAGAAATG  700
      |||||  ||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTCCCCAGGGCAGTGCTTAAAGTGAGCAGCCAACAGAAGATAATAAATG  698

seq1  ACAGCAAAGGTAACTGGCTCAAGTCCCTCCATGTAACCATGTACAGCACA  750
      |||||||| |||||||||||| |||||||||||||||||||| |||||||
seq2  ACAGCAAACGTAACTGGCTCACGTCCCTCCATGTAACCATGTTCAGCACA  748

seq1  TGTCTGAGCACCTTGTATGTCTGGCTTAAGTGCAGGTAAGGCAATATAGA  800
      ||| |||  ||||||||||||||||||||||||| ||||||||| |||||
seq2  TGTATGAATACCTTGTATGTCTGGCTTAAGTGCAAGTAAGGCAAAATAGA  798

seq1  TTGTGCAAACAAGATCTGTGTCCTATGATCAGGAATGGCTACTACATGCA  850
      ||||||||||||||||||||||||||||| |||||  ||||||| |||||
seq2  TTGTGCAAACAAGATCTGTGTCCTATGATAAGGAACTGCTACTAGATGCA  848

seq1  TCACACAAAATGTGCAGTCTGAAATGTCTGGATCTGAACTAAGGTTTTCT  900
      |||||| ||||||||||||||||||||||||||||||||| |||||||||
seq2  TCACACTAAATGTGCAGTCTGAAATGTCTGGATCTGAACT-AGGTTTTCT  897

seq1  CAAGCAGAGGT-GTGTGGGGATGATTAAATGGCTGA  935
      |||||| |||| |||||| |||||||||| ||||||
seq2  CAAGCAAAGGTGGTGTGGAGATGATTAAA-GGCTGA  932

seq1: chr12_4975617_4976427
seq2: B6Ng01-234F04.g_67_878 (reverse)

seq1  CCCTCCCTA-CCTCCCACCACTAATAATAAATAAAATAGAAAAGGAGGCA  49
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTACCCTCCCACCACTAATAATAAATAAAATAGAAAAGGAGGCA  50

seq1  TGTAGGAACGTAACATTTAGTTTTAGCTTCTTGTCACACATTAGTGATTC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGAACGTAACATTTAGTTTTAGCTTCTTGTCACACATTAGTGATTC  100

seq1  ACTATTTAATGTCACTAATGAAGCTTCTTTTTACCTCTTAGAACATGAAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTAATGTCACTAATGAAGCTTCTTTTTACCTCTTAGAACATGAAT  150

seq1  TGTCTAAACTCATGAAACAGAGATAAAAGTTGTAGGGTTTTTGTTTCTGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAAACTCATGAAACAGAGATAAAAGTTGTAGGGTTTTTGTTTCTGT  200

seq1  TTTTAAGTTTTCTTTTTATGTATATATGTGAGCACACTGTCACTGTCTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTTTTCTTTTTATGTATATATGTGAGCACACTGTCACTGTCTTC  250

seq1  AGACACACCTGAAGAGGGCATCAGATTCCATTACATGGTTGTGAGCCACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACCTGAAGAGGGCATCAGATTCCATTACATGGTTGTGAGCCACC  300

seq1  GTGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGCCAGTGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGCCAGTGC  350

seq1  TCTTGACTGCTGAACCATCTCTCCAGCCCCCAAAATCTTAGGTTTTATAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACTGCTGAACCATCTCTCCAGCCCCCAAAATCTTAGGTTTTATAA  400

seq1  CAAACAGGTTGATGTGAATGCCAAGGTGTTTAAAATTCTTTTAAAACAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGGTTGATGTGAATGCCAAGGTGTTTAAAATTCTTTTAAAACAGA  450

seq1  GAACAGCTTAGTGTGGGGTTACAGTCAGAATTTGTTACAGCAAACCCATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCTTAGTGTGGGGTTACAGTCAGAATTTGTTACAGCAAACCCATG  500

seq1  AGAAGTTGGTGCTGTCTTACGCCGCTGTACTCTTCTTCTTAGGCCAGAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGGTGCTGTCTTACGCCGCTGTACTCTTCTTCTTAGGCCAGAAA  550

seq1  GCACATCTTGCAGATCCACACCAGGGACTGGAACCCAAAACTGTCTGATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCTTGCAGATCCACACCAGGGACTGGAACCCAAAACTGTCTGATG  600

seq1  CATTTTTAGGAGAATTGGCAGAAAAATGTGTTGGTGAGTGCTCCTATTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAGGAGAATTGGCAGAAAAATGTGTTGGTGAGTGCTCCTATTTG  650

seq1  AACTCTTCGCCTGTCTCTGCTTGTCCTACTCCGTGTGCCTTTCCCTTTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTCGCCTGTCTCTGCTTGTCCTACTCCGTGTGCCTTTCCCTTTAT  700

seq1  GTTGAAATGTGAATGAGTACAGTTGTATGTCTTTAACTGTGTGATAGACG  749
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  GTTGAAATGCGAATGAGCACAGTTGTATGTCTTTAACTGTGTGATAGACG  750

seq1  GCTCTGAATTCATATTTAAAAGTTATACAATCGTTTCACTTAAAGTTTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAATTCATATTTAAAAGTTATACAATCGTTTCACTTAAAGTTTCA  800

seq1  TGGATTGAATTC  811
      ||||||||||||
seq2  TGGATTGAATTC  812