BAC Information

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BAC

Clone NameB6Ng01-235A22
Chromosome12 (Build37)
Map Location 63,397,787 - 63,398,914
singlet/doubletsinglet
Overlap geneLOC622746
Upstream geneLOC665677, Nanog-ps2, Lrfn5, LOC665699, LOC665707, LOC100040403, LOC665713
Downstream geneLOC100040438, 1700047L15Rik, Tspyl-ps, EG665741, EG382606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235A22.bB6Ng01-235A22.g
ACCGA046636GA046637
length1,1161,163
definitionB6Ng01-235A22.b B6Ng01-235A22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcttcaaaattcccgtaattgctacctttactcaagcgtgttca
ctgaggtaacattttctctcagtcattttcatgtgctgttttgtacaatg
acaacatagcagcgacgaagccacagggagtcataagacataggaagagc
aagggaggataaaaatctcacaggaaatactcttaggtaaatgttagtag
gaaaggaagtatgcaagaagtcatctaattattgtggtagtattcacaat
agctgaaacatggactgacatgaaacatttatccagagataaatcttgtc
ttttgaaggaatgaacttgtatacatcatatcaaaaaagcaaagcagatg
tagaaatacaagtagaaatagtttctcacttatgtgggaagaacaatcat
taaaatgctaaagaattgaccataaagcaaaagaaatacacttacagaaa
tgcagtaagtcacagctaggcaaaaaacgaggcaggaaagacagtggtat
ggaagatcaacttgaccctagaatgctgtggtcctaaatagaaagctaat
ggtatatttcatatttttaaaaaaacgaggataacagttgggatcattag
aatatagcttacttaaagacaactgcatcacccaaaagcttagcccagca
tgaaaaagtctcaacaaagtatctatctctcctttggatacagtgcttgg
agtcactctgggatgtccagcatttgacacacaggcgtccactttcatac
aacacagattctaataaaataaggccctcctgaatgtctggtatgataat
tgtttgccttactatcaagaagcatgggaaaacaccaaagtctgcacatg
catgcccacatggactttgagaggtagtgctatgcaacttaaagtcttta
tgaggtagtctaaaagaaaagcaactcctattatcaggagctgtgttggc
tgtgtgtgtgctaaatgcacctatgatgggagaaagctcgtttttctggc
agaggagaaaatcactgaattagcctccttatttcaataagaatctgtcc
tgagacactgcagtcagaaagtcacaacacagaaagataggtctttgcca
tagaccttccgactag
gaattcttcgatcccacttcagaggaagaagaaaataatcacaggacgca
aagagggggggtgggtggacctgagagcttgggaagacaggagaaaagcc
ctcatcgctagcagaatgagtagaaatatgcaactaaagtactagagacc
tgggagatgagagactctcagaactcaaagggatgaaatgcctaacagtg
gggagagggaatttgtagactccaccttcagtagaaagacagggcatcaa
gtggagggatggtgttgtcagtcagaaattctgacccagaattgttcctg
gttaaaaaaaaaaaactacagggacaaaaatggagaagatattgagggaa
aggaggttcagtgactggcacaacttgtgatccatctcaaggagaggctc
caaggcctatctattactattactgatgctatggtgcttatagacaggag
tctaacatggctgtcctctgagaggtccaaccagaagctaactgagatag
atgcagatacttacacccaaccattggattaaagtcacggacccctgtgg
ttgaatagggaaaagacagaagaagctgaggaggagggtgaccccataga
aagaccagcagtctcaagtaattcggagccttgatattcctcagacactg
agctaccatagggcagcatacacattcagatgctggtccaaggtccctga
tacatataaagaagaagtctgcctggtctggcctcagtgggagaagaagc
acctaaccttggagagacttgaggccccagtgagtgggaagacctggtgg
ggtaggagtttctcatggaatcattgggaggaggaatgggatgagaaact
ctgggaggcagaccatgagagggacaaagactggaatgtaaaccgtaaag
taaaataataaataataaataaataataataaatggaaaaaaattgcgtt
aattgttacactatccagtaaatctgaaacagtatagtatgtacctatgc
aggatggagatgtttggtatgactctgcattacttatcaaaatgttaaaa
acaatgctaggtactcccatagtcagcaggccatatttaagcaatgtcat
ggtaatgcaaggtcgaccctgctttacatcatgacaatgactgcttaaca
tagcctatgagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_63397787_63398914
seq2: B6Ng01-235A22.b_46_1161

seq1  GAATTCTCTTCAAAATTCCCGTAATTGCTACCTTTACTCAAGCGTGTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCAAAATTCCCGTAATTGCTACCTTTACTCAAGCGTGTTCA  50

seq1  CTGAGGTAACATTTTCTCTCAGTCATTTTCATGTGCTGTTTTGTACAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTAACATTTTCTCTCAGTCATTTTCATGTGCTGTTTTGTACAATG  100

seq1  ACAACATAGCAGCGACGAAGCCACAGGGAGTCATAAGACATAGGAAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATAGCAGCGACGAAGCCACAGGGAGTCATAAGACATAGGAAGAGC  150

seq1  AAGGGAGGATAAAAATCTCACAGGAAATACTCTTAGGTAAATGTTAGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGGATAAAAATCTCACAGGAAATACTCTTAGGTAAATGTTAGTAG  200

seq1  GAAAGGAAGTATGCAAGAAGTCATCTAATTATTGTGGTAGTATTCACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAGTATGCAAGAAGTCATCTAATTATTGTGGTAGTATTCACAAT  250

seq1  AGCTGAAACATGGACTGACATGAAACATTTATCCAGAGATAAATCTTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAACATGGACTGACATGAAACATTTATCCAGAGATAAATCTTGTC  300

seq1  TTTTGAAGGAATGAACTTGTATACATCATATCAAAAAAGCAAAGCAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGGAATGAACTTGTATACATCATATCAAAAAAGCAAAGCAGATG  350

seq1  TAGAAATACAAGTAGAAATAGTTTCTCACTTATGTGGGAAGAACAATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATACAAGTAGAAATAGTTTCTCACTTATGTGGGAAGAACAATCAT  400

seq1  TAAAATGCTAAAGAATTGACCATAAAGCAAAAGAAATACACTTACAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCTAAAGAATTGACCATAAAGCAAAAGAAATACACTTACAGAAA  450

seq1  TGCAGTAAGTCACAGCTAGGCAAAAAACGAGGCAGGAAAGACAGTGGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTAAGTCACAGCTAGGCAAAAAACGAGGCAGGAAAGACAGTGGTAT  500

seq1  GGAAGATCAACTTGACCCTAGAATGCTGTGGTCCTAAATAGAAAGCTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATCAACTTGACCCTAGAATGCTGTGGTCCTAAATAGAAAGCTAAT  550

seq1  GGTATATTTCATATTTTTAAAAAAACGAGGATAACAGTTGGGATCATTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATTTCATATTTTTAAAAAAACGAGGATAACAGTTGGGATCATTAG  600

seq1  AATATAGCTTACTTAAAGACAACTGCATCACCCAAAAGCTTAGCCCAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGCTTACTTAAAGACAACTGCATCACCCAAAAGCTTAGCCCAGCA  650

seq1  TGAAAAAGTCTCAACAAAGTATCTATCTCTCCTTTGGATACAGTGCTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAGTCTCAACAAAGTATCTATCTCTCCTTTGGATACAGTGCTTGG  700

seq1  AGTCACTCTGGGATGTCCAGCATTTGACACACAGGCGTCCACTTTCATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTCTGGGATGTCCAGCATTTGACACACAGGCGTCCACTTTCATAC  750

seq1  AACACAGATTCTAATAAAATAAGGCCCTCCTGAATGTCTGGTATGATAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGATTCTAATAAAATAAGGCCCTCCTGAATGTCTGGTATGATAAT  800

seq1  TGTTTGCCTTACTATCAAGAAGCATGGGAAAACACCAAAGTCTGCACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCCTTACTATCAAGAAGCATGGGAAAACACCAAAGTCTGCACATG  850

seq1  CATGCCCACATGGACTTTGAGAGGTAGTGCTATGCAACTTAAAGTCTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCACATGGACTTTGAGAGGTAGTGCTATGCAACTTAAAGTCTTTA  900

seq1  TGAGGTAGTCTAAAAGAAAAGCAACTCCTATTATCAGGAGCTGTGTTGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTAGTCTAAAAGAAAAGCAACTCCTATTATCAGGAGCTGTGTTGGC  950

seq1  TGTGTGTGTGCTAAATGCACCTATGATGGGAGAAAGCTCGTTTTTCTTGG  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTGTGTGTGCTAAATGCACCTATGATGGGAGAAAGCTCGTTTTTC-TGG  999

seq1  CAAGGAGGAGAAAAATCACTGAATTAGCCTCCTTATTTCAAATAAGAAAT  1050
      ||  |||||| |||||||||||||||||||||||||||| |||||| |||
seq2  CA--GAGGAG-AAAATCACTGAATTAGCCTCCTTATTTC-AATAAG-AAT  1044

seq1  CTGTCCCTGAGACACTGCAAGTCAGGAAAGTCACAAACACAGAAAGGATA  1100
      |||| ||||||||||||| ||||| ||||||||| |||||||||| ||| 
seq2  CTGT-CCTGAGACACTGC-AGTCA-GAAAGTCAC-AACACAGAAA-GAT-  1088

seq1  AGGTCTTTGGCATAGACCTCCAGACTAG  1128
      ||||||||| ||||||||| | ||||||
seq2  AGGTCTTTGCCATAGACCTTCCGACTAG  1116