BAC Information

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BAC

Clone NameB6Ng01-235P11
Chromosome12 (Build37)
Map Location 84,919,142 - 85,085,628
singlet/doubletdoublet
Overlap geneZfyve1, LOC626950, Rbm25, Psen1
Upstream geneRgs6, Dpf3, Wdr21
Downstream genePapln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235P11.bB6Ng01-235P11.g
ACCGA047308GA047309
length4201,124
definitionB6Ng01-235P11.b B6Ng01-235P11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,085,203 - 85,085,628)(84,919,142 - 84,920,270)
sequence
tctgttactgttaacattacagccacacagttcatggtaagctgttcttt
gtaaacatttccaaagatttgacttttaattctgacaccatttcttcctt
ttccagccacctttgggactgtagctttcccgtcctgcaggctccattta
atttctttaattctgggttttaagtgctctcgcctctatttaaggcagca
attacatttctcagcatgagcttttccttttgtgaatccatctcccagaa
ggctttttgatttttgctgtgtctcacaaccacggtcagcaggtcgtgtg
cagttcactgccttcttcccctcccccctttcttagggaagttctggtct
gctgtggtggtctgatgcagacaccattccctttatgtgtggatatatgg
tgtgtgtttgtatgatgtgt
gaattcaaggtcagcagaagctatggagcaaaatctatcttgaaagaaag
aaagagagaaagaagaaaagcaagcaaagttaccacacacataagtctct
gtgtgtctgtgtatatgtacatatgataaaactaacatctggaatattac
ccggtatttagtatcctaagacatactaaacccatatggttttttgttgg
gtatagcctcagaccaagagaaagaactccaaacccttagcaacctgcct
tctggtggtctatgagcaagcggcatgtgcaagtggcttttttcttatgt
aaagtaaggacatatccatttgacctccactggccccacaaataaaataa
acagataaacaataaaatgaacagatgaggaaaacctgctgggcaaacct
gaaggcaggcctcaccctccttcctgtcttccacattcctttgctccctg
gtaacactactaaacaactgtagacaactttccctcagccagaaaagact
cagttgccttcatttagatggctaggaaaagcaaaagtcaagaagggcgg
tggggtggggaacaggaggtccctggaggggaaaccagaaaaggggataa
catttgaaatgtaagtaaagaaaatatctaataaaaatttaaaaaaggaa
aaaaaaaaaaaaagaaaaaaagaaagcggccagggcaccagagcctgacg
ctggaggatcagggctacagaggagctctgggtgagccatgactgactac
ctgctgagaccacatctcaaaaacaaaaagacaggttccctttggtaagg
aaggaaagaaggctctggaaagggccatggccccagcttctctcatctgt
gtgcttatactcatccaccccaccttcaccccactttctgaggtgagcag
tccttgtcaccccacccaattctgacagactgaaatagtccttggttctt
gaaacaaaaacaaaagcaggagcacatcacctttgcccctcctggagcct
ggacttcttgaaacctcagcagttagcagctccacccagagctgagccac
tgctgctggctttgaagagctactttcactaggagcttcaggacttagat
aacactggcagtcaaccctgtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_85085203_85085628
seq2: B6Ng01-235P11.b_50_475 (reverse)

seq1  ACACATCATACAAACACACACCATATATCCACACATAAAGGGAATGGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCATACAAACACACACCATATATCCACACATAAAGGGAATGGTGT  50

seq1  CTGCATCAGACCACCACAGCAGACCAGAACTTCCCTAAGAAAGGGGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCAGACCACCACAGCAGACCAGAACTTCCCTAAGAAAGGGGGGAG  100

seq1  GGGAAGAAGGCAGTGAACTGCACACGACCTGCTGACCGTGGTTGTGAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAAGGCAGTGAACTGCACACGACCTGCTGACCGTGGTTGTGAGAC  150

seq1  ACAGCAAAAATCAAAAAGCCTTCTGGGAGATGGATTCACAAAAGGAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAAAATCAAAAAGCCTTCTGGGAGATGGATTCACAAAAGGAAAAG  200

seq1  CTCATGCTGAGAAATGTAATTGCTGCCTTAAATAGAGGCGAGAGCACTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCTGAGAAATGTAATTGCTGCCTTAAATAGAGGCGAGAGCACTTA  250

seq1  AAACCCAGAATTAAAGAAATTAAATGGAGCCTGCAGGACGGGAAAGCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAGAATTAAAGAAATTAAATGGAGCCTGCAGGACGGGAAAGCTAC  300

seq1  AGTCCCAAAGGTGGCTGGAAAAGGAAGAAATGGTGTCAGAATTAAAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAAAGGTGGCTGGAAAAGGAAGAAATGGTGTCAGAATTAAAAGTC  350

seq1  AAATCTTTGGAAATGTTTACAAAGAACAGCTTACCATGAACTGTGTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTGGAAATGTTTACAAAGAACAGCTTACCATGAACTGTGTGGCT  400

seq1  GTAATGTTAACAGTAACAGAGAATTC  426
      ||||||||||||||||||||||||||
seq2  GTAATGTTAACAGTAACAGAGAATTC  426

seq1: chr12_84919142_84920270
seq2: B6Ng01-235P11.g_67_1190

seq1  GAATTCAAGGTCAGCAGAAGCTATGGAGCAAAATCTATCTTGAAAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCAGCAGAAGCTATGGAGCAAAATCTATCTTGAAAGAAAG  50

seq1  AAAGAGAGAAAGAAGAAAAGCAAGCAAAGTTACCACACACATAAGTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGAAAGAAGAAAAGCAAGCAAAGTTACCACACACATAAGTCTCT  100

seq1  GTGTGTCTGTGTATATGTACATATGATAAAACTAACATCTGGAATATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGTGTATATGTACATATGATAAAACTAACATCTGGAATATTAC  150

seq1  CCGGTATTTAGTATCCTAAGACATACTAAACCCATATGGTTTTTTGTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTATTTAGTATCCTAAGACATACTAAACCCATATGGTTTTTTGTTGG  200

seq1  GTATAGCCTCAGACCAAGAGAAAGAACTCCAAACCCTTAGCAACCTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCCTCAGACCAAGAGAAAGAACTCCAAACCCTTAGCAACCTGCCT  250

seq1  TCTGGTGGTCTATGAGCAAGCGGCATGTGCAAGTGGCTTTTTTCTTATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGGTCTATGAGCAAGCGGCATGTGCAAGTGGCTTTTTTCTTATGT  300

seq1  AAAGTAAGGACATATCCATTTGACCTCCACTGGCCCCACAAATAAAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAGGACATATCCATTTGACCTCCACTGGCCCCACAAATAAAATAA  350

seq1  ACAGATAAACAATAAAATGAACAGATGAGGAAAACCTGCTGGGCAAACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAAACAATAAAATGAACAGATGAGGAAAACCTGCTGGGCAAACCT  400

seq1  GAAGGCAGGCCTCACCCTCCTTCCTGTCTTCCACATTCCTTTGCTCCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGGCCTCACCCTCCTTCCTGTCTTCCACATTCCTTTGCTCCCTG  450

seq1  GTAACACTACTAAACAACTGTAGACAACTTTCCCTCAGCCAGAAAAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACACTACTAAACAACTGTAGACAACTTTCCCTCAGCCAGAAAAGACT  500

seq1  CAGTTGCCTTCATTTAGATGGCTAGGAAAAGCAAAAGTCAAGAAGGGCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCCTTCATTTAGATGGCTAGGAAAAGCAAAAGTCAAGAAGGGCGG  550

seq1  TGGGGTGGGGAACAGGAGGTCCCTGGAGGGGAAACCAGAAAAGGGGATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGGGGAACAGGAGGTCCCTGGAGGGGAAACCAGAAAAGGGGATAA  600

seq1  CATTTGAAATGTAAGTAAAGAAAATATCTAATAAAAATTTAAAAAAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAATGTAAGTAAAGAAAATATCTAATAAAAATTTAAAAAAGGAA  650

seq1  AAAAAAAAAAAAAGAAAAAAAGAAAGCGGCCAGGGCACCAGAGCCTGACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAGAAAAAAAGAAAGCGGCCAGGGCACCAGAGCCTGACG  700

seq1  CTGGAGGATCAGGGCTACAGAGGAGCTCTGGGTGAGCCATGACTGACTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGATCAGGGCTACAGAGGAGCTCTGGGTGAGCCATGACTGACTAC  750

seq1  CTGCTGAGACCACATCTCAAAAACAAAAAGACAGGTTCCCTTTGGTAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGACCACATCTCAAAAACAAAAAGACAGGTTCCCTTTGGTAAGG  800

seq1  AAGGAAAGAAGGCTCTGG-AAGGGCCATGGCCCCAGCTTCTCTCATCTGT  849
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGGAAAGAAGGCTCTGGAAAGGGCCATGGCCCCAGCTTCTCTCATCTGT  850

seq1  GTGCTTATACTCATCCACCCCACCTTCA-CCCAC-TTCTGAGGTGAGCAG  897
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  GTGCTTATACTCATCCACCCCACCTTCACCCCACTTTCTGAGGTGAGCAG  900

seq1  TCCTTGTCACCCCACCCAATTCTGACAGACTGAAATAGTCCTTGG-TCCT  946
      ||||||||||||||||||||||||||||||||||||||||||||| || |
seq2  TCCTTGTCACCCCACCCAATTCTGACAGACTGAAATAGTCCTTGGTTCTT  950

seq1  GAAACAAAAACAAAAGCAGGAGCAACATCACCTTTGCCCCTCCTGGAGCC  996
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAAACAAAAACAAAAGCAGGAGC-ACATCACCTTTGCCCCTCCTGGAGCC  999

seq1  TGGAC-TCTTGAAACCTCAGGCAAGTTAGCAGCTCCACCCAGAGCTGAGC  1045
      ||||| ||||||||||||||   |||||||||||||||||||||||||||
seq2  TGGACTTCTTGAAACCTCAG--CAGTTAGCAGCTCCACCCAGAGCTGAGC  1047

seq1  CACTGCTGGCTGGGCCTTGAAAGAGCTAC-TTCACTAGGAAGCCTCCAGG  1094
      ||||||| |||||  |||  ||||||||| ||||||||||   || ||||
seq2  CACTGCT-GCTGG--CTTTGAAGAGCTACTTTCACTAGGA--GCTTCAGG  1092

seq1  ACATTAGATAACAACTGGCAGCCCAACCCTGTGGG  1129
      || ||||||||| ||||||||  ||||||||||||
seq2  AC-TTAGATAAC-ACTGGCAG-TCAACCCTGTGGG  1124