BAC Information

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BAC

Clone NameB6Ng01-238C20
Chromosome12 (Build37)
Map Location 114,763,919 - 114,765,048
singlet/doubletsinglet
Overlap geneIgh, Ighd5-1
Upstream gene2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1
Downstream geneAdam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238C20.bB6Ng01-238C20.g
ACCGA048940GA048941
length1,1441,183
definitionB6Ng01-238C20.b B6Ng01-238C20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtatctgcctctctcactgtggagtacctaccacagtgataca
gagcatccatggaagaacgacccctcatctacagtggctagccagtgagg
ataagtgggacatgaagtttgacctggtgtcacagctttgagtctagaga
ggcccagtggagttaggattgagagtcccaagttttggtctagccatact
gacacaatctctataacagtatctgtggtggcttcaggaagctggcttct
gaagtgcccccacccaacattccatctgcactggaaccaaaaagtttcag
atctcagcagataaatacttggattaaaagaacacacacacacatacaca
cacacacacacacacacacacacacacacacactacaaggtcaaatatgc
tccaggggacacaaaccaccatggcttgtgaaaagaccacaagccaagga
gtttctgttacaggttgggttactcagtaccatggtaacactcaatgata
cagaaacacatccaggacaattctagaagatgatccaggctgttcagatg
aggagataggtcctggagagatcaattcctcactctccattctaagatga
ctgaaacaacccaactagggcatgagccagaattacacacacttacacat
gaactcacacacacatactcatatgcacgaacatgtgtgcatacacatac
acttgcattcacacatacatgcacaagtgggcgtacacacactcatatac
attcatacacatatccatgcacataagtgcacacacacattcatgtacat
aggcactggtacacacacatatacacatgcatgcacacatgcccttgtat
acacacatacacacacatgctcacatacacacacacattacacaatgtca
taagcagaaagtacccaacagtctttcccactcaaaaccagcccatcaag
agtgaagggatgaagacttgattagtatcaattgttacagggggccctgt
tatatggggccctggaagtagacaccacaatggagaagaattctgtgcca
agtcttccagccactgtgctacctatacttagtgaaatgggggcccacat
agtcatacgtacacctatagcttgaccatgtggcacatgcattt
gaattcaaccacagaaacaacagaaagcctcatggaaactgaacaacttt
ttactcaatgatcactgggtcagggaagaaataaagacataaaaactctc
tagaattcaatgaaaatgaaggtatggcattctcaaacttaagagacaca
atgaaagcagtggtaaggggaaaattaatagcactaagtgccttcataaa
gaaactgtagtgttcttatagtagcaatttaaaagtaaaccagaaatctc
tagaaaaataagcaaacatactcaacaggagtataagtcaggaaataatc
aaactcagggctgaaataaacaaattagaaacaaaggagcaaaaaaaaaa
ttaatgaaagcaagaaatggttcttggagaaaatcaacagacaaaccctt
agccaaactaactaaaaggcagagagatagtagctaaattagtagaatca
tatatgaaaagagggacataacaacagacactgtaagaatgcaaagaatc
attagatctcactttaatagactgtacctgacacaattggaaaagtctaa
atgcaatggatttctagacagatactacttaccaaagctaaacaaagatc
aggtaaatgatctaaacagtcctataatccctaaggaaatagaagcagcc
attaaaagtttctcaactagttcccaactcaaagggccagcaaacatctt
caacataattgtagaagtaaactttcctaacctagagaaagaaatgccca
taaacatacaagaagcctacagaacaccaaacagatgggaccagaaaaga
aatttctctcgtcatataataactaaaacaccaaacgcacaaaacaagca
agaatattgaaagcagtaaagggaaaaaagtcaactaacatataagggca
gacctgtcagaatttgcaccagacttctccaccagagactataaagcaag
aagatccagggcagatgtcattcagacccttagacatcaaaaatgctagc
ccagatggttttacctagcaaactcataattaccatagacgagaaatcaa
gtttttccagaacaaaaacaacttaaacaatatctttctactaatccaac
ctatggggataatagaatgaaagtcacccaagaaggtaacctacccttaa
gaaaaagccaggaaattaaatcttttttctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_114763919_114765048
seq2: B6Ng01-238C20.b_48_1191 (reverse)

seq1  AAATGCATGTGCCACCATGCCCAGCTATA-GTGTACGTATGACTATGTGG  49
      |||||||||||||||   | | ||||||| ||||||||||||||||||||
seq2  AAATGCATGTGCCACATGGTCAAGCTATAGGTGTACGTATGACTATGTGG  50

seq1  --CCCCA-TCCACT-AGTATAGGTAGGCACAGTGCCTG--AGAC-TGGCA  92
        ||||| | |||| |||||||||| |||||||| |||  |||| |||||
seq2  GCCCCCATTTCACTAAGTATAGGTA-GCACAGTGGCTGGAAGACTTGGCA  99

seq1  CAG-ATTCCTCTCCATTGT-GTGTCTACTTCCAGGCCCCATTATAACAGG  140
      ||| |||| |||||||||| ||||||||||||||| |||  |||||||||
seq2  CAGAATTCTTCTCCATTGTGGTGTCTACTTCCAGGGCCCCATATAACAGG  149

seq1  GCCCCCTGTAAC-ATTGATACT-ATC-AGTCTTCATCCCTTCACTCTTGA  187
      |||||||||||| ||||||||| ||| |||||||||||||||||||||||
seq2  GCCCCCTGTAACAATTGATACTAATCAAGTCTTCATCCCTTCACTCTTGA  199

seq1  TGGGCTGG-TTTGAGTGGGAAAGACTGTTGGGTACTTTCTGCTTATGACA  236
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGGTTTTGAGTGGGAAAGACTGTTGGGTACTTTCTGCTTATGACA  249

seq1  TTGTGT-ATGTGTGTGTGTATGTGAGCATGTGTGTGTATGTGTGTATACA  285
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAATGTGTGTGTGTATGTGAGCATGTGTGTGTATGTGTGTATACA  299

seq1  AGGGCATGTGTGCATGCATGTGTATATGTGTGTGTACCAGTGCCTATGTA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATGTGTGCATGCATGTGTATATGTGTGTGTACCAGTGCCTATGTA  349

seq1  CATGAATGTGTGTGTGCACTTATGTGCATGGATATGTGTATGAATGTATA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATGTGTGTGTGCACTTATGTGCATGGATATGTGTATGAATGTATA  399

seq1  TGAGTGTGTGTACGCCCACTTGTGCATGTATGTGTGAATGCAAGTGTATG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGTGTACGCCCACTTGTGCATGTATGTGTGAATGCAAGTGTATG  449

seq1  TGTATGCACACATGTTCGTGCATATGAGTATGTGTGTGTGAGTTCATGTG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCACACATGTTCGTGCATATGAGTATGTGTGTGTGAGTTCATGTG  499

seq1  TAAGTGTGTGTAATTCTGGCTCATGCCCTAGTTGGGTTGTTTCAGTCATC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTGTGTAATTCTGGCTCATGCCCTAGTTGGGTTGTTTCAGTCATC  549

seq1  TTAGAATGGAGAGTGAGGAATTGATCTCTCCAGGACCTATCTCCTCATCT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATGGAGAGTGAGGAATTGATCTCTCCAGGACCTATCTCCTCATCT  599

seq1  GAACAGCCTGGATCATCTTCTAGAATTGTCCTGGATGTGTTTCTGTATCA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCCTGGATCATCTTCTAGAATTGTCCTGGATGTGTTTCTGTATCA  649

seq1  TTGAGTGTTACCATGGTACTGAGTAACCCAACCTGTAACAGAAACTCCTT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGTTACCATGGTACTGAGTAACCCAACCTGTAACAGAAACTCCTT  699

seq1  GGCTTGTGGTCTTTTCACAAGCCATGGTGGTTTGTGTCCCCTGGAGCATA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTGGTCTTTTCACAAGCCATGGTGGTTTGTGTCCCCTGGAGCATA  749

seq1  TTTGACCTTGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCTTGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  799

seq1  ATGTGTGTGTGTGTTCTTTTAATCCAAGTATTTATCTGCTGAGATCTGAA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTGTGTTCTTTTAATCCAAGTATTTATCTGCTGAGATCTGAA  849

seq1  ACTTTTTGGTTCCAGTGCAGATGGAATGTTGGGTGGGGGCACTTCAGAAG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTGGTTCCAGTGCAGATGGAATGTTGGGTGGGGGCACTTCAGAAG  899

seq1  CCAGCTTCCTGAAGCCACCACAGATACTGTTATAGAGATTGTGTCAGTAT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTCCTGAAGCCACCACAGATACTGTTATAGAGATTGTGTCAGTAT  949

seq1  GGCTAGACCAAAACTTGGGACTCTCAATCCTAACTCCACTGGGCCTCTCT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGACCAAAACTTGGGACTCTCAATCCTAACTCCACTGGGCCTCTCT  999

seq1  AGACTCAAAGCTGTGACACCAGGTCAAACTTCATGTCCCACTTATCCTCA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAAAGCTGTGACACCAGGTCAAACTTCATGTCCCACTTATCCTCA  1049

seq1  CTGGCTAGCCACTGTAGATGAGGGGTCGTTCTTCCATGGATGCTCTGTAT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAGCCACTGTAGATGAGGGGTCGTTCTTCCATGGATGCTCTGTAT  1099

seq1  CACTGTGGTAGGTACTCCACAGTGAGAGAGGCAGATACTGAATTC  1130
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGGTAGGTACTCCACAGTGAGAGAGGCAGATACTGAATTC  1144