BAC Information

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BAC

Clone NameB6Ng01-239C22
Chromosome12 (Build37)
Map Location 30,414,098 - 30,520,296
singlet/doubletdoublet
Overlap geneMyt1l
Upstream geneTtc15, Tssc1, 4833405L11Rik, LOC629608, LOC100043496
Downstream genePxdn, Tpo, Sntg2, Tmem18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239C22.bB6Ng01-239C22.g
ACCGA049676GA049677
length1,138324
definitionB6Ng01-239C22.b B6Ng01-239C22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,519,163 - 30,520,296)(30,414,098 - 30,414,421)
sequence
gaattccttacgaacagtccattgctgttttgttcttaagccctcatagc
tcctgcctctttctttaggtatggctaaagttatgaattaaagtttagat
atgaattaaggtggaaatgtcagcattcagctcatttcctgtgagggcct
ggagggggcctaggagaacccctttcagaggactccctatctcagaggaa
gatatgcccttctctttgaaatctgcaatcttactagcctattgacctgt
tagaatggcacacactcctcttttaccttaacacatgcctttctttctct
ttatgctaaatatttctattataaaatcttccctggagagagcaaacacc
tttcaggcttagccgtgcggtagagtttaaatggctgtgtcctgctaagt
ggagacacagaaattatctatgttcagtccacacctgtagtggcatctgc
ttcctcagtctgcatgttgcctctgtgaactgtctcaaaccgtttctcct
cttcagtttgtggcgctaccctcactactttccccagtctttctctgaag
actgggaagactttcaaacaggaaccccagtgacctctaaccgttcctcc
taggctccttctgaacctcagccttcatacctggggcttttgaaaaaaat
gctattttacctggttgctgccccacatctctttctttacctcacctttc
cacacaagcctatgttggggctcctttctgtcactcacacttcatgcctt
tccctggtaactcactcctgtttttactggagctcaaaagatgccaccta
gggtgccacccactagacctacttcttggtatcctcccatgctacctagc
acactttaagtctgtactgtggagtggtgacagaaactctgtctggctca
gttggggtctccttaggcacagaactgccctttgtcatttagtcagtatg
ttacagggcagagcccttcactgaattcatctgggcggaaatggatggga
agccagccagaaaaaccaaacaaggctactatggagtactctacttacta
ttatcttacacctttaacagtatttatgaagactactcacgagaaaagca
gttagagctcctcggtacctctcatgcggcttaatacc

tcatgtcattgctcagtggcttttccgtctatgtctcagaactaagccca
tgaagatttgggttagaaaaaggtttatagctgggcggtggtggcgcaca
cctataatcccagcactcgggaggcagaggcaggcagatttctgagttcg
aggccagcctggtctacaaagtgagttccaggacagtcagggctatacag
agaaaccctgtcttgaaacaaaacaaaacaaaacaaaacaaaacaaaaca
aaacaaaacaaaacaaaacaaaacaaaacaacaaggaagaaaggaaggaa
ggaagggagggagggagggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_30519163_30520296
seq2: B6Ng01-239C22.b_41_1178 (reverse)

seq1  GGTAT--AGCCGGCATG-GAGGTACAGAGGAACTCTAACTGC-TTTCTCG  46
      |||||  |||| ||||| ||||||| ||||| |||||||||| |||||||
seq2  GGTATTAAGCC-GCATGAGAGGTACCGAGGAGCTCTAACTGCTTTTCTCG  49

seq1  TGAGTAGTTCTTCAT-AATACTGT--AAAGTGTAAAGATAATAGTAAGTA  93
      ||||||| ||||||| ||||||||  || |||| ||||||||||||||||
seq2  TGAGTAG-TCTTCATAAATACTGTTAAAGGTGT-AAGATAATAGTAAGTA  97

seq1  GAGTACTCCATAGTAGCCTTGTTTGGTTTTCTGGGCTGGCTTCCCATCCA  143
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  GAGTACTCCATAGTAGCCTTGTTTGGTTTTTCTGGCTGGCTTCCCATCCA  147

seq1  TTTCCGCCCAGATGAATTCAGTGAAGGGCTCTGCCCTGTAACATACTGAC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGCCCAGATGAATTCAGTGAAGGGCTCTGCCCTGTAACATACTGAC  197

seq1  TAAATGACAAAGGGCAGTTCTGTGCCTAAGGAGACCCCAACTGAGCCAGA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGACAAAGGGCAGTTCTGTGCCTAAGGAGACCCCAACTGAGCCAGA  247

seq1  CAGAGTTTCTGTCACCACTCCACAGTACAGACTTAAAGTGTGCTAGGTAG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTCTGTCACCACTCCACAGTACAGACTTAAAGTGTGCTAGGTAG  297

seq1  CATGGGAGGATACCAAGAAGTAGGTCTAGTGGGTGGCACCCTAGGTGGCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAGGATACCAAGAAGTAGGTCTAGTGGGTGGCACCCTAGGTGGCA  347

seq1  TCTTTTGAGCTCCAGTAAAAACAGGAGTGAGTTACCAGGGAAAGGCATGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGAGCTCCAGTAAAAACAGGAGTGAGTTACCAGGGAAAGGCATGA  397

seq1  AGTGTGAGTGACAGAAAGGAGCCCCAACATAGGCTTGTGTGGAAAGGTGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAGTGACAGAAAGGAGCCCCAACATAGGCTTGTGTGGAAAGGTGA  447

seq1  GGTAAAGAAAGAGATGTGGGGCAGCAACCAGGTAAAATAGCATTTTTTTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGAAAGAGATGTGGGGCAGCAACCAGGTAAAATAGCATTTTTTTC  497

seq1  AAAAGCCCCAGGTATGAAGGCTGAGGTTCAGAAGGAGCCTAGGAGGAACG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCCCAGGTATGAAGGCTGAGGTTCAGAAGGAGCCTAGGAGGAACG  547

seq1  GTTAGAGGTCACTGGGGTTCCTGTTTGAAAGTCTTCCCAGTCTTCAGAGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGGTCACTGGGGTTCCTGTTTGAAAGTCTTCCCAGTCTTCAGAGA  597

seq1  AAGACTGGGGAAAGTAGTGAGGGTAGCGCCACAAACTGAAGAGGAGAAAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGGGGAAAGTAGTGAGGGTAGCGCCACAAACTGAAGAGGAGAAAC  647

seq1  GGTTTGAGACAGTTCACAGAGGCAACATGCAGACTGAGGAAGCAGATGCC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAGACAGTTCACAGAGGCAACATGCAGACTGAGGAAGCAGATGCC  697

seq1  ACTACAGGTGTGGACTGAACATAGATAATTTCTGTGTCTCCACTTAGCAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGGTGTGGACTGAACATAGATAATTTCTGTGTCTCCACTTAGCAG  747

seq1  GACACAGCCATTTAAACTCTACCGCACGGCTAAGCCTGAAAGGTGTTTGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGCCATTTAAACTCTACCGCACGGCTAAGCCTGAAAGGTGTTTGC  797

seq1  TCTCTCCAGGGAAGATTTTATAATAGAAATATTTAGCATAAAGAGAAAGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCAGGGAAGATTTTATAATAGAAATATTTAGCATAAAGAGAAAGA  847

seq1  AAGGCATGTGTTAAGGTAAAAGAGGAGTGTGTGCCATTCTAACAGGTCAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATGTGTTAAGGTAAAAGAGGAGTGTGTGCCATTCTAACAGGTCAA  897

seq1  TAGGCTAGTAAGATTGCAGATTTCAAAGAGAAGGGCATATCTTCCTCTGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTAGTAAGATTGCAGATTTCAAAGAGAAGGGCATATCTTCCTCTGA  947

seq1  GATAGGGAGTCCTCTGAAAGGGGTTCTCCTAGGCCCCCTCCAGGCCCTCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGAGTCCTCTGAAAGGGGTTCTCCTAGGCCCCCTCCAGGCCCTCA  997

seq1  CAGGAAATGAGCTGAATGCTGACATTTCCACCTTAATTCATATCTAAACT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAATGAGCTGAATGCTGACATTTCCACCTTAATTCATATCTAAACT  1047

seq1  TTAATTCATAACTTTAGCCATACCTAAAGAAAGAGGCAGGAGCTATGAGG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCATAACTTTAGCCATACCTAAAGAAAGAGGCAGGAGCTATGAGG  1097

seq1  GCTTAAGAACAAAACAGCAATGGACTGTTCGTAAGGAATTC  1134
      |||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGAACAAAACAGCAATGGACTGTTCGTAAGGAATTC  1138


seq1: chr12_30414098_30414421
seq2: B6Ng01-239C22.g_76_399

seq1  TCATGTCATTGCTCAGTGGCTTTTCCGTCTATGTCTCAGAACTAAGCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCATTGCTCAGTGGCTTTTCCGTCTATGTCTCAGAACTAAGCCCA  50

seq1  TGAAGATTTGGGTTAGAAAAAGGTTTATAGCTGGGCGGTGGTGGCGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATTTGGGTTAGAAAAAGGTTTATAGCTGGGCGGTGGTGGCGCACA  100

seq1  CCTATAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCG  150

seq1  AGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGTCAGGGCTATACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGTCAGGGCTATACAG  200

seq1  AGAAACCCTGTCTTGAAACAAAACAAAACAAAACAAAACAAAACAAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCTGTCTTGAAACAAAACAAAACAAAACAAAACAAAACAAAACA  250

seq1  AAACAAAACAAAACAAAACAAAACAAAACAACAAGGAAGAAAGGAAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAAACAAAACAAAACAAAACAACAAGGAAGAAAGGAAGGAA  300

seq1  GGAAGGGAGGGAGGGAGGGAGGGA  324
      ||||||||||||||||||||||||
seq2  GGAAGGGAGGGAGGGAGGGAGGGA  324


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