BAC Information

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BAC

Clone NameB6Ng01-242P07
Chromosome12 (Build37)
Map Location 99,707,254 - 99,834,163
singlet/doubletdoublet
Overlap geneKcnk10
Upstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65
Downstream geneSpata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1, LOC100039892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242P07.bB6Ng01-242P07.g
ACCGA052467GA052468
length1,1481,021
definitionB6Ng01-242P07.b B6Ng01-242P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,832,987 - 99,834,163)(99,707,254 - 99,708,275)
sequence
gaattctggaccacatcaggaaagaagatagacaggagaggaaattaggg
aagggagggaggactgcacacaggtctttaaagaaggacagcttctaaaa
gactaaagattgcttggtggggaagaaagagaacattcacttttttgttt
gtttgttttatttaatttttgtttgctttttgtttttgttaaatcagagt
tttctagaagagaaggtgaattgacctaggacggtgaaggtgagttgtgt
attcctcttccctccaggatgcttctcttctggaaaagcctaaggagaag
gtggacccagcatcactgtcctgtggtgtctccaacttgaaatacatgtc
tctgcatttcatgtacattagtcttggtatgacatcagaaaaaggacatc
tactgtccttttctatttagcaattgttgccacagatgtaaaaaaaaaaa
aaaaaaaagctattggtgttttccaggtaaaatgtttcttattccatatt
atgtcacactaaaacagagagaaattggggcacatgatggtggtggtgtt
gcttttaacaaaatttcaactgttcaactttaccaatgaagactcaggag
ccagatgctagggtgaaagcattctagctcagagaatcagagaaagcact
ccgctgactttcctcctcaaccagtggtgtcccggaaccaacttccttca
aactgaatgccccttccttctacttcctgtgcatgtctctgcccttctga
ctccctcttacactccacatttttttcttagtcatcctatgttcacttcc
tgtcaagtggttgcttgctccaggtctcgacctatggacttactttaatt
catcttgtttatagtatccaagcagaaagctcttggattaaaggtacgtg
ctaaggctgaaccacagcacaactaaaaaacagggttttccagtgaatac
acatctcggggttcacagtgtgatcaaatatccgcaacacagagtctcat
tccttccatcttgtatctgaccagacgtagacttccttctacgtgtagaa
gagataatctgcgaccttattttatagtattaatatacttctcattaagt
tttttcacgatcactccttctcatatgtcaagtacactgtagctgcct
gaattctcacatcaatgaatgcagtctaaaacaaacaatgagttcttcgg
aggagctaaggattactaccctattaagtcggtgccttgcagaacaccaa
actagcccatgaaaattggtgataaagagagaagataaagttcgtctacc
ttttaggctgatttttatgatgccagtaaaactgtgaatgctaataaaac
tctctcattacactcataactcaagagttgctattaattttagatacagg
ttaccatggggtagagctaatacatccatggattttaagtagccccaaat
tgggaagatataaaacattttaattaataagactccagaggttttaagaa
gcaaatcgtctcacagatgggcaagaggtaggagagagtgaattcccata
cagttttctagctgagtccctctgttggacgacgcttttggataaatttg
tacaagtttcccttagggagcaacaaacagaaaaagattcgccctattcc
tttttagactttaaaacttaagcgttttaagacttaagacctggaaggag
gtgaaatcagtcaaaaattgaacacagagtaagtggtaccaagcagagca
atggactagaagagcaaagcacaggatatttccatccatgaagactcttg
tggaagcagaccagaacaaactgggcattaggactttcgggtctccactt
ctataaatccattttgttggttacacggcagtgtgcagcagagcaaggac
tgcccagagcctaggttaaactccacaacagaggagatgaacaagagatg
ctcactaaatgtgaactgcttagtgagatgcagcagtccttggagaagaa
tcagaggctgtgatccattcacatgaggagaataaattgaaaatggatgc
agacaggccaatattcaactgctatcaagtgtccgccgtttatctgcacc
ccttcccccaatatctcgcttaaactcaagctcttctgggctgtccgaac
actaaggaaccctacaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_99832987_99834163
seq2: B6Ng01-242P07.b_46_1193 (reverse)

seq1  AGGCAGCTACAGTGTACTT-ACATATAATAAAAAAAAATAAATAAATCTT  49
      ||||||||||||||||||| |||||| | ||          |   ||| |
seq2  AGGCAGCTACAGTGTACTTGACATATGAGAA--------GGAGTGATCGT  42

seq1  TAAAAAAAACTTTAATTAAAAAATAAATAAATAAATAAATAAATAAAAAT  99
       ||||||    |||||          | || || || ||||    |||||
seq2  GAAAAAA---CTTAAT---------GAGAAGTATATTAATACTATAAAAT  80

seq1  AAAGTCGGCAAGAATAATCTCTTCTACCACGTAAGAAGGAAGTCTACGTT  149
      || ||| |||   || |||||||||| ||||| ||||||||||||||| |
seq2  AAGGTC-GCA--GATTATCTCTTCTA-CACGT-AGAAGGAAGTCTACG-T  124

seq1  CTGGTCAGATACAAGATTGGAAGGAATTGAAGACTCTGTGTTGCGGGATA  199
      |||||||||||||||| ||||||||||   |||||||||||||| |||||
seq2  CTGGTCAGATACAAGA-TGGAAGGAAT--GAGACTCTGTGTTGC-GGATA  170

seq1  TTTGATCACACTGTGAACCCCGAGATTGTGTTATTCACTGGAAAACCCTG  249
      ||||||||||||||||||||||||| |||| |||||||||||||||||||
seq2  TTTGATCACACTGTGAACCCCGAGA-TGTG-TATTCACTGGAAAACCCTG  218

seq1  -TTTTTAGTTGTGCTGTGGTTCAGCCTTAGCACGTACCTTTAATCCAAGA  298
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAGTTGTGCTGTGGTTCAGCCTTAGCACGTACCTTTAATCCAAGA  268

seq1  GCTTTCTGCTTGGATACTATAAACAAGATGAATTAAAGTAAGTCCATAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTGCTTGGATACTATAAACAAGATGAATTAAAGTAAGTCCATAGG  318

seq1  TCGAGACCTGGAGCAAGCAACCACTTGACAGGAAGTGAACATAGGATGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGACCTGGAGCAAGCAACCACTTGACAGGAAGTGAACATAGGATGAC  368

seq1  TAAG-AAAAAATGTGGAGTGTAAGAGGGAGTCAGAAGGGCAGAGACATGC  447
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAAAATGTGGAGTGTAAGAGGGAGTCAGAAGGGCAGAGACATGC  418

seq1  ACAGGAAGTAGAAGGAAGGGGCATTCAGTTTGAAGGAAGTTGGTTCCGGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGTAGAAGGAAGGGGCATTCAGTTTGAAGGAAGTTGGTTCCGGG  468

seq1  ACACCACTGGTTGAGGAGGAAAGTCAGCGGAGTGCTTTCTCTGATTCTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACTGGTTGAGGAGGAAAGTCAGCGGAGTGCTTTCTCTGATTCTCT  518

seq1  GAGCTAGAATGCTTTCACCCTAGCATCTGGCTCCTGAGTCTTCATTGGTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGAATGCTTTCACCCTAGCATCTGGCTCCTGAGTCTTCATTGGTA  568

seq1  AAGTTGAACAGTTGAAATTTTGTTAAAAGCAACACCACCACCATCATGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAACAGTTGAAATTTTGTTAAAAGCAACACCACCACCATCATGTG  618

seq1  CCCCAATTTCTCTCTGTTTTAGTGTGACATAATATGGAATAAGAAACATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATTTCTCTCTGTTTTAGTGTGACATAATATGGAATAAGAAACATT  668

seq1  TTACCTGGAAAACACCAATAGCTTTTTTTTTTTTTTTTTTTACATCTGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGGAAAACACCAATAGCTTTTTTTTTTTTTTTTTTTACATCTGTG  718

seq1  GCAACAATTGCTAAATAGAAAAGGACAGTAGATGTCCTTTTTCTGATGTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAATTGCTAAATAGAAAAGGACAGTAGATGTCCTTTTTCTGATGTC  768

seq1  ATACCAAGACTAATGTACATGAAATGCAGAGACATGTATTTCAAGTTGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAGACTAATGTACATGAAATGCAGAGACATGTATTTCAAGTTGGA  818

seq1  GACACCACAGGACAGTGATGCTGGGTCCACCTTCTCCTTAGGCTTTTCCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCACAGGACAGTGATGCTGGGTCCACCTTCTCCTTAGGCTTTTCCA  868

seq1  GAAGAGAAGCATCCTGGAGGGAAGAGGAATACACAACTCACCTTCACCGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAGCATCCTGGAGGGAAGAGGAATACACAACTCACCTTCACCGT  918

seq1  CCTAGGTCAATTCACCTTCTCTTCTAGAAAACTCTGATTTAACAAAAACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGTCAATTCACCTTCTCTTCTAGAAAACTCTGATTTAACAAAAACA  968

seq1  AAAAGCAAACAAAAATTAAATAAAACAAACAAACAAAAAAGTGAATGTTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAACAAAAATTAAATAAAACAAACAAACAAAAAAGTGAATGTTC  1018

seq1  TCTTTCTTCCCCACCAAGCAATCTTTAGTCTTTTAGAAGCTGTCCTTCTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCCCCACCAAGCAATCTTTAGTCTTTTAGAAGCTGTCCTTCTT  1068

seq1  TAAAGACCTGTGTGCAGTCCTCCCTCCCTTCCCTAATTTCCTCTCCTGTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACCTGTGTGCAGTCCTCCCTCCCTTCCCTAATTTCCTCTCCTGTC  1118

seq1  TATCTTCTTTCCTGATGTGGTCCAGAATTC  1177
      ||||||||||||||||||||||||||||||
seq2  TATCTTCTTTCCTGATGTGGTCCAGAATTC  1148

seq1: chr12_99707254_99708275
seq2: B6Ng01-242P07.g_69_1089

seq1  GAATTCTCACATCAATGAATGCAGTCTAAAACAAACAATGAGTTCTTCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACATCAATGAATGCAGTCTAAAACAAACAATGAGTTCTTCGG  50

seq1  AGGAGCTAAGGATTACTACCCTATTAAGTCGGTGCCTTGCAGAACACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTAAGGATTACTACCCTATTAAGTCGGTGCCTTGCAGAACACCAA  100

seq1  ACTAGCCCATGAAAATTGGTGATAAAGAGAGAAGATAAAGTTCGTCTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCCCATGAAAATTGGTGATAAAGAGAGAAGATAAAGTTCGTCTACC  150

seq1  TTTTAGGCTGATTTTTATGATGCCAGTAAAACTGTGAATGCTAATAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGCTGATTTTTATGATGCCAGTAAAACTGTGAATGCTAATAAAAC  200

seq1  TCTCTCATTACACTCATAACTCAAGAGTTGCTATTAATTTTAGATACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATTACACTCATAACTCAAGAGTTGCTATTAATTTTAGATACAGG  250

seq1  TTACCATGGGGTAGAGCTAATACATCCATGGATTTTAAGTAGCCCCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATGGGGTAGAGCTAATACATCCATGGATTTTAAGTAGCCCCAAAT  300

seq1  TGGGAAGATATAAAACATTTTAATTAATAAGACTCCAGAGGTTTTAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGATATAAAACATTTTAATTAATAAGACTCCAGAGGTTTTAAGAA  350

seq1  GCAAATCGTCTCACAGATGGGCAAGAGGTAGGAGAGAGTGAATTCCCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCGTCTCACAGATGGGCAAGAGGTAGGAGAGAGTGAATTCCCATA  400

seq1  CAGTTTTCTAGCTGAGTCCCTCTGTTGGACGACGCTTTTGGATAAATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTCTAGCTGAGTCCCTCTGTTGGACGACGCTTTTGGATAAATTTG  450

seq1  TACAAGTTTCCCTTAGGGAGCAACAAACAGAAAAAGATTCGCCCTATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTTTCCCTTAGGGAGCAACAAACAGAAAAAGATTCGCCCTATTCC  500

seq1  TTTTTAGACTTTAAAACTTAAGCGTTTTAAGACTTAAGACCTGGAAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGACTTTAAAACTTAAGCGTTTTAAGACTTAAGACCTGGAAGGAG  550

seq1  GTGAAATCAGTCAAAAATTGAACACAGAGTAAGTGGTACCAAGCAGAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATCAGTCAAAAATTGAACACAGAGTAAGTGGTACCAAGCAGAGCA  600

seq1  ATGGACTAGAAGAGCAAAGCACAGGATATTTCCATCCATGAAGACTCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTAGAAGAGCAAAGCACAGGATATTTCCATCCATGAAGACTCTTG  650

seq1  TGGAAGCAGACCAGAACAAACTGGGCATTAGGACTTTCGGGTCTCCACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCAGACCAGAACAAACTGGGCATTAGGACTTTCGGGTCTCCACTT  700

seq1  CTATAAATCCATTTTGTTGGTTACACGGCAGTGTGCAGCAGGAGCAAGGA  750
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTATAAATCCATTTTGTTGGTTACACGGCAGTGTGCAGCA-GAGCAAGGA  749

seq1  CTGCCCAGAGCCTAGGTTAAACTCCACAACAGAGGAGATGAACAAGAAGA  800
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTGCCCAGAGCCTAGGTTAAACTCCACAACAGAGGAGATGAACAAG-AGA  798

seq1  TGCTCACTAAATGTGAACTGCTTAGTGAGATGCAGCAGGTCCTTGGAG-A  849
      ||||||||||||||||||||||||||||||||||||| |||||||||| |
seq2  TGCTCACTAAATGTGAACTGCTTAGTGAGATGCAGCA-GTCCTTGGAGAA  847

seq1  GAATCAGAGGCTGTGATCCAATTCAACATGA-GAGAATAAATTGAAAATG  898
      ||||||||||||||||||| |||| |||||| ||||||||||||||||||
seq2  GAATCAGAGGCTGTGATCC-ATTC-ACATGAGGAGAATAAATTGAAAATG  895

seq1  GATGCAGACAGGGCCAATA-TCAACTTGCTATCAAGTGTCCG-CGTTTAT  946
      |||||||||| |||||||| ||||| |||||||||||||||| |||||||
seq2  GATGCAGACA-GGCCAATATTCAAC-TGCTATCAAGTGTCCGCCGTTTAT  943

seq1  CTGCACCCCT--CCCCCATATCTCGCTAAACCTTCAGGCTCTTCTGGGCT  994
      ||||||||||  |||| |||||||||| || | ||| |||||||||||||
seq2  CTGCACCCCTTCCCCCAATATCTCGCTTAAAC-TCAAGCTCTTCTGGGCT  992

seq1  GTCAG-ACACTAAGGACCCTTACAAGAAA  1022
      ||| | |||||||||| || |||||||||
seq2  GTCCGAACACTAAGGAACCCTACAAGAAA  1021