BAC Information

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BAC

Clone NameB6Ng01-244N11
Chromosome12 (Build37)
Map Location 7,288,212 - 7,431,996
singlet/doubletdoublet
Overlap geneLOC668380
Upstream geneLOC238049, LOC100042118
Downstream geneEG668388, Apob, 1110057K04Rik, Gdf7, Hs1bp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244N11.bB6Ng01-244N11.g
ACCGA053878GA053879
length9371,128
definitionB6Ng01-244N11.b B6Ng01-244N11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,431,086 - 7,431,996)(7,288,212 - 7,289,339)
sequence
gaattcacatccacatagctgatggctggattccaagactaggaatccaa
ccattagggggtgacacttgaggaagcccaagcttggacacggtgtatta
catatgtgctgcattttactggtcaaaagaaattatatgtccaataaggg
aaaggttttatgtgaacaaaagcttaagggaaaaatgtagagctacaatg
tataggaaggtgtctgctgaccttggttaaagccttcaaaagaaagaaca
gttactagtagcgatttgttcatggcttcactatgtatatgtggcagggc
cagttaaatgcctaacatatttcatgacaaagttaaaggctagaagggag
tggaacgacagagataacttagaggtggagtgtctgactgttcaaggtct
gtgactcttggtgtttgatcgatctagagagagaaagaaagagggagagg
aggagagggatagaggaagaaaggcagacagacacagagagaaacaaaca
gaatgagatggagagaatgagaataaaagacagattttcgtgactcatgt
atacaaaggcaaagctccattttccgcgaagggcaaaacattcttgcccg
ccaatatgtgtgagactgagactagaggctctcaagatgcgactttttct
cacatcttccttctcattgctattgctttgggccaatgctttctatttat
ccaaggcaaagtgagtgcaagatcccattgtacacctctttctgcaacat
gtggaaataaacttacttcaatactcgtttggaattcaggacttttctcc
ctatgttcaaactcagtatttatggtaagaaaaaccaccaattccaattt
cctcattactaggtcattaaaataaaggcttgtaagaaacattttgtgga
cattcagggatgatttttctttgaaatacaatatcta

gaattcctctgcaaaatttctttctgagatagtttctctgagttcctgaa
cagtttttgagataatgagaccctttgtttagatgcacaagtagaaaaca
aaagttagggctcagagagggcaaacagggcatccaagttaatggaccag
atcataagagaagtagaaagatgatgagagatcatccacatgcatagatg
ccaactcaaccagcaaatatcttaactgcagaaaaatagccaatcccttg
atgactcatttccattgtgaaaaatcagaaatttctcttgtaatgtcttt
ttagccttgtcaacagttgttttggctacttaagaattcataaaaaacta
tttttaattatttgtttagtttgttctctgtaactgaacaaattttacat
catgtggggggaaataggcattatacattgtagtagtgaacatccaagtt
aaagaatacagacatacaatttactagttagtaactatttctctgttgct
gttgcaggtactactgtgtagcagtctaactcttaattgctgggtgcatt
aatagcaaaccaataaatatgattaaataaattatgtgaaagctaagtag
agtgtctcatatctttaatcccagtagtttggaggtggacacaagttgac
taaaacaatttaagggacagcctcgtctacatagtacaggttctatagag
agactatgtctcaaaaacaagcaatggaaaaacaacttaaaatcacatta
tattttattatgatctattttcagataaaatttgtcataattaaaaacaa
atagacacaatacattatttcctattatgtatctaccttatatttatttc
ttaataaatgcatcatctactgagctatgaattttttcatcataaatatt
ttgtacctttcaatcacaaggtctacatacattacttatcatgtgacaga
actaattcaaacattttagacactgaagcagagttctacatggaggaaca
cgacctcaattgttcatctgaagcttggggaccttgctgccataagttcg
tgcttggcagacacaagaatattcaagaaatctggtgaaatactctagaa
agcttcacatccaggttcagaaaaagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_7431086_7431996
seq2: B6Ng01-244N11.b_48_984 (reverse)

seq1  TAGATATTGTATT--CAAGAAAAACAA--CCTGAATGTCCAC-AAATG-T  44
      |||||||||||||   ||||||||  |  ||||||||||||| ||||| |
seq2  TAGATATTGTATTTCAAAGAAAAATCATCCCTGAATGTCCACAAAATGTT  50

seq1  TCTTACAAGCCTTTA-TTTAATGA-CTAGT-ATGAGGAATTTGGA--TTG  89
      ||||||||||||||| |||||||| ||||| |||||||| |||||  | |
seq2  TCTTACAAGCCTTTATTTTAATGACCTAGTAATGAGGAAATTGGAATTGG  100

seq1  TGG-TTTTCATA-CAT-AATACTGAGTTTGAACATAGGGAGAAAAGTCTA  136
      ||| ||||| || ||| |||||||||||||||||||||||||||||||  
seq2  TGGTTTTTCTTACCATAAATACTGAGTTTGAACATAGGGAGAAAAGTCCT  150

seq1  GAATTCAAAACGAGTATTGAAGTA--GTTATTTCCACATGTTGCAG-AAG  183
      |||||| |||||||||||||||||   ||||||||||||||||||| |||
seq2  GAATTCCAAACGAGTATTGAAGTAAGTTTATTTCCACATGTTGCAGAAAG  200

seq1  AGGTGTACAATGGGATC-TGCACTCAC-TTGCCTTGGAT-AATAG-AAGC  229
      ||||||||||||||||| ||||||||| ||||||||||| ||||| ||||
seq2  AGGTGTACAATGGGATCTTGCACTCACTTTGCCTTGGATAAATAGAAAGC  250

seq1  ATTGG-CCAAAGCAATAGC-ATGAGAAGGAAGATGTGAG-AAAAGTCGCA  276
      ||||| ||||||||||||| ||||||||||||||||||| ||||||||||
seq2  ATTGGCCCAAAGCAATAGCAATGAGAAGGAAGATGTGAGAAAAAGTCGCA  300

seq1  TCTTGAGAGCCTCTAGTCTCAGTCTCACACATATTGGCGGGC-AGAATGT  325
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTTGAGAGCCTCTAGTCTCAGTCTCACACATATTGGCGGGCAAGAATGT  350

seq1  TTTGCCCTTCGCGGAAAATGGAGCTTTGCCTTTGTATACATGAGTCACG-  374
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTGCCCTTCGCGGAAAATGGAGCTTTGCCTTTGTATACATGAGTCACGA  400

seq1  AAATCTGTCTTTTATTCTCATTCTCTCCATCTCATTCTGTTTGTTTCTCT  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGTCTTTTATTCTCATTCTCTCCATCTCATTCTGTTTGTTTCTCT  450

seq1  CTGTGTCTGTCTGCCTTTCTTCCTCTATCCCTCTCCTCCTCTCCCTCTTT  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTGTCTGCCTTTCTTCCTCTATCCCTCTCCTCCTCTCCCTCTTT  500

seq1  CTTTCTCTCTCTAGATCGATCAAACACCAAGAGTCACAGACCTTGAACAG  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTCTCTAGATCGATCAAACACCAAGAGTCACAGACCTTGAACAG  550

seq1  TCAGACACTCCACCTCTAAGTTATCTCTGTCGTTCCACTCCCTTCTAGCC  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACTCCACCTCTAAGTTATCTCTGTCGTTCCACTCCCTTCTAGCC  600

seq1  TTTAACTTTGTCATGAAATATGTTAGGCATTTAACTGGCCCTGCCACATA  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTTTGTCATGAAATATGTTAGGCATTTAACTGGCCCTGCCACATA  650

seq1  TACATAGTGAAGCCATGAACAAATCGCTACTAGTAACTGTTCTTTCTTTT  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGTGAAGCCATGAACAAATCGCTACTAGTAACTGTTCTTTCTTTT  700

seq1  GAAGGCTTTAACCAAGGTCAGCAGACACCTTCCTATACATTGTAGCTCTA  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTTTAACCAAGGTCAGCAGACACCTTCCTATACATTGTAGCTCTA  750

seq1  CATTTTTCCCTTAAGCTTTTGTTCACATAAAACCTTTCCCTTATTGGACA  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCCCTTAAGCTTTTGTTCACATAAAACCTTTCCCTTATTGGACA  800

seq1  TATAATTTCTTTTGACCAGTAAAATGCAGCACATATGTAATACACCGTGT  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTCTTTTGACCAGTAAAATGCAGCACATATGTAATACACCGTGT  850

seq1  CCAAGCTTGGGCTTCCTCAAGTGTCACCCCCTAATGGTTGGATTCCTAGT  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTTGGGCTTCCTCAAGTGTCACCCCCTAATGGTTGGATTCCTAGT  900

seq1  CTTGGAATCCAGCCATCAGCTATGTGGATGTGAATTC  911
      |||||||||||||||||||||||||||||||||||||
seq2  CTTGGAATCCAGCCATCAGCTATGTGGATGTGAATTC  937


seq1: chr12_7288212_7289339
seq2: B6Ng01-244N11.g_66_1193

seq1  GAATTCCTCTGCAAAATTTCTTTCTGAGATAGTTTCTCTGAGTTCCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGCAAAATTTCTTTCTGAGATAGTTTCTCTGAGTTCCTGAA  50

seq1  CAGTTTTTGAGATAATGAGACCCTTTGTTTAGATGCACAAGTAGAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTTGAGATAATGAGACCCTTTGTTTAGATGCACAAGTAGAAAACA  100

seq1  AAAGTTAGGGCTCAGAGAGGGCAAACAGGGCATCCAAGTTAATGGACCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAGGGCTCAGAGAGGGCAAACAGGGCATCCAAGTTAATGGACCAG  150

seq1  ATCATAAGAGAAGTAGAAAGATGATGAGAGATCATCCACATGCATAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAGAGAAGTAGAAAGATGATGAGAGATCATCCACATGCATAGATG  200

seq1  CCAACTCAACCAGCAAATATCTTAACTGCAGAAAAATAGCCAATCCCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCAACCAGCAAATATCTTAACTGCAGAAAAATAGCCAATCCCTTG  250

seq1  ATGACTCATTTCCATTGTGAAAAATCAGAAATTTCTCTTGTAATGTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCATTTCCATTGTGAAAAATCAGAAATTTCTCTTGTAATGTCTTT  300

seq1  TTAGCCTTGTCAACAGTTGTTTTGGCTACTTAAGAATTCATAAAAAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTTGTCAACAGTTGTTTTGGCTACTTAAGAATTCATAAAAAACTA  350

seq1  TTTTTAATTATTTGTTTAGTTTGTTCTCTGTAACTGAACAAATTTTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTATTTGTTTAGTTTGTTCTCTGTAACTGAACAAATTTTACAT  400

seq1  CATGTGGGGGGAAATAGGCATTATACATTGTAGTAGTGAACATCCAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGGGGGAAATAGGCATTATACATTGTAGTAGTGAACATCCAAGTT  450

seq1  AAAGAATACAGACATACAATTTACTAGTTAGTAACTATTTCTCTGTTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATACAGACATACAATTTACTAGTTAGTAACTATTTCTCTGTTGCT  500

seq1  GTTGCAGGTACTACTGTGTAGCAGTCTAACTCTTAATTGCTGGGTGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGGTACTACTGTGTAGCAGTCTAACTCTTAATTGCTGGGTGCATT  550

seq1  AATAGCAAACCAATAAATATGATTAAATAAATTATGTGAAAGCTAAGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAAACCAATAAATATGATTAAATAAATTATGTGAAAGCTAAGTAG  600

seq1  AGTGTCTCATATCTTTAATCCCAGTAGTTTGGAGGTGGACACAAGTTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTCATATCTTTAATCCCAGTAGTTTGGAGGTGGACACAAGTTGAC  650

seq1  TAAAACAATTTAAGGGACAGCCTCGTCTACATAGTACAGGTTCTATAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAATTTAAGGGACAGCCTCGTCTACATAGTACAGGTTCTATAGAG  700

seq1  AGACTATGTCTCAAAAACAAGCAATGGAAAAACAACTTAAAATCACATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATGTCTCAAAAACAAGCAATGGAAAAACAACTTAAAATCACATTA  750

seq1  TATTTTATTATGATCTATTTTCAGATAAAATTTGTCATAATTAAAAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTATGATCTATTTTCAGATAAAATTTGTCATAATTAAAAACAA  800

seq1  ATAGACACAATACATTATTTCCTATTATGTATCTACCTTATATTTATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACACAATACATTATTTCCTATTATGTATCTACCTTATATTTATTTC  850

seq1  TTAATAAATGCATCATCTACTGAGCTATGAATTTTTTCATCATAAATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAATGCATCATCTACTGAGCTATGAATTTTTTCATCATAAATATT  900

seq1  TTGTACCTTTCAATCACAAGGTCTACATACATTACTTATCATGTGACAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCTTTCAATCACAAGGTCTACATACATTACTTATCATGTGACAGA  950

seq1  ACTAATTCAAACATTTTAGACACTGAAGCAGAGTTCTACAT-GAGG-ACA  998
      ||||||||||||||||||||||||||||||||||||||||| |||| |||
seq2  ACTAATTCAAACATTTTAGACACTGAAGCAGAGTTCTACATGGAGGAACA  1000

seq1  CGACCTCAAATTGTTCATCTGAAGGCTTGGGGACCTTGCTTGCCATTAAG  1048
      ||||||| ||||||||||||||| ||||||||||||||| ||||| ||||
seq2  CGACCTC-AATTGTTCATCTGAA-GCTTGGGGACCTTGC-TGCCA-TAAG  1046

seq1  TTCGTGGCTTGGCAGAACACCAAGAATA-TCAAGAAATCT-GTG-AATAC  1095
      ||||| ||||||||| ||| |||||||| ||||||||||| ||| |||||
seq2  TTCGT-GCTTGGCAG-ACA-CAAGAATATTCAAGAAATCTGGTGAAATAC  1093

seq1  TCTAGAAAGC-TCACATCAAGG-TCAGAAAAAGCC  1128
      |||||||||| ||||||| ||| ||||||||||||
seq2  TCTAGAAAGCTTCACATCCAGGTTCAGAAAAAGCC  1128


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