BAC Information

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BAC

Clone NameB6Ng01-245K17
Chromosome12 (Build37)
Map Location 86,363,701 - 86,521,274
singlet/doubletdoublet
Overlap geneYlpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf
Upstream geneAcot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1
Downstream geneEif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5, Tgfb3, 1700019E19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245K17.bB6Ng01-245K17.g
ACCGA054495GA054496
length9871,109
definitionB6Ng01-245K17.b B6Ng01-245K17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,363,701 - 86,364,489)(86,520,192 - 86,521,274)
sequence
gaattctagcctctctgcacatatcttttgattctaataatttttaaatt
ttttaaaaataattttaaaaattaaataatttttaaatttttaaataatt
aaaaaataataattttgtgtattgtggtgttttgataacatgtatgtctg
ggtcccatgtgcgtgcctggtgttgatagaggccagaagagggtattaga
ctctctgtaacttgggttacagatggttgtgaaccacataggtgctggca
atctaaggcaggtcttctggaagagctcttaactactgagccatctctcc
agctcccaagttgtagtgaattgaagcagctttatctgtcagctttcttc
tctttattactacaataaagaaatgaaagttttgagtttgcattgtgctt
aatgaagccccaaaacagtgtgctattttgggtaattctaatgtgataat
gtttcttttatctttgtttcattctcttcgatgattctttttgtgttgta
attgtttccttattttggttttttaaagcataattaagaaatattaatgt
tatgagcaatcaaatctaggataaggaaattatgaagtgtttcaggatat
agggggaaatcactaagatctcagtttttgtaagtttaagaatgaatcca
aatgatagttgcaagataatatacacattactcttatttttttcttacat
gtattgtatctgtgtgtggaaattgggtctttccttccacgagagtcccg
aggatagcacacagtcttggtggcaagcacatttacctactgagctgttt
cactggcctttttctgatttttaaaacctaaaatttttgtttgttttata
agttagacctacaaggaaaactgttaatgaagtttggttttatatatagc
tagagcttattaaagaatttttctaaaactaaaactgtacaatgaggaaa
cactaaggggttaatgatatccttttggggggggtcc
gaattcaatgagttaaggtgttgaaagcaccaggctgtttcttggcatat
tattggtattcaataaataccatttctcccttaaaacaacaccaaacata
ttgataagcagctaagggctgaactgggactatggaccatgccatccttt
cagcaggtgaatctactcaaaggacctcagtgacagtgaatggccaggat
tgtgtggatagccgatggaatggatcgtgctagaatggtggtgtgtgtgt
gtgcatgtgcttaagtgtgcacaaacccctgtatccactggttcttccca
aactggcagaggatagagtccttattttgcttttgtcttgttctgtgctg
tgaaagattctagtctataactgtagtatttctagtttttaaatacgaat
ccaaaattgaattagagaccgtgcccaagaactaccgttagcttctctct
ctgtctctctgtctctctctctctgtctctctctctctctctgtctctgt
ctctgtctttctgtctctctctgtctctctgtctctgtctctctgtctct
ctctctgtctctctgtctctctgtctttgtctctctgtctctctgtctct
ctctgtctctctgtctcactctctctctctctctctctttctctctctct
cacacacacacacacacacacagtgcctttatagtttccacgaccctact
gagttgcttcctactttgcagatggcaagacagactcagaaaatgaaagc
catagcttgaagttagttgcatgcatgtcctgaagtagggcctcagaccc
gggaacagagatgtcagttcacttgtcctgaaaggagatgagctatcctc
gtgccatggaggttttggagtcttcctggtttctgctacctttacctgct
ttagcaaattcatcccacaaccaaaacaacatgcgtctgaggtttaggga
caagagacctcctcaaggcgcttacagggagctcagattgtttatcccaa
ggggtttaagtttcattgcatgagaaagagggagtgtcgttgagccatct
tgcatgctcttctttgtgccaaatatggaatgtgtggaaaggggttcatt
ctgcattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_86363701_86364489
seq2: B6Ng01-245K17.b_238_1031

seq1  TATTAGACTCTCTGTAACTTGGGTTACAGATGGTTGTGAACCACATAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGACTCTCTGTAACTTGGGTTACAGATGGTTGTGAACCACATAGGT  50

seq1  GCTGGCAATCTAAGGCAGGTCTTCTGGAAGAGCTCTTAACTACTGAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCAATCTAAGGCAGGTCTTCTGGAAGAGCTCTTAACTACTGAGCCA  100

seq1  TCTCTCCAGCTCCCAAGTTGTAGTGAATTGAAGCAGCTTTATCTGTCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCAGCTCCCAAGTTGTAGTGAATTGAAGCAGCTTTATCTGTCAGC  150

seq1  TTTCTTCTCTTTATTACTACAATAAAGAAATGAAAGTTTTGAGTTTGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTCTTTATTACTACAATAAAGAAATGAAAGTTTTGAGTTTGCAT  200

seq1  TGTGCTTAATGAAGCCCCAAAACAGTGTGCTATTTTGGGTAATTCTAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTAATGAAGCCCCAAAACAGTGTGCTATTTTGGGTAATTCTAATG  250

seq1  TGATAATGTTTCTTTTATCTTTGTTTCATTCTCTTCGATGATTCTTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATGTTTCTTTTATCTTTGTTTCATTCTCTTCGATGATTCTTTTTG  300

seq1  TGTTGTAATTGTTTCCTTATTTTGGTTTTTTAAAGCATAATTAAGAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAATTGTTTCCTTATTTTGGTTTTTTAAAGCATAATTAAGAAATA  350

seq1  TTAATGTTATGAGCAATCAAATCTAGGATAAGGAAATTATGAAGTGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTATGAGCAATCAAATCTAGGATAAGGAAATTATGAAGTGTTTC  400

seq1  AGGATATAGGGGGAAATCACTAAGATCTCAGTTTTTGTAAGTTTAAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATAGGGGGAAATCACTAAGATCTCAGTTTTTGTAAGTTTAAGAAT  450

seq1  GAATCCAAATGATAGTTGCAAGATAATATACACATTACTCTTATTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAAATGATAGTTGCAAGATAATATACACATTACTCTTATTTTTTT  500

seq1  CTTACATGTATTGTATCTGTGTGTGGAAATTGGGTCTTTCCTTCCACGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATGTATTGTATCTGTGTGTGGAAATTGGGTCTTTCCTTCCACGAG  550

seq1  AGTCCCGAGGATAGCACACAGTCTTGGTGGCAAGCACATTTACCTACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCGAGGATAGCACACAGTCTTGGTGGCAAGCACATTTACCTACTGA  600

seq1  GCTGTTTCACTGGCCTTTTTCTGATTTTTAAAACCTAAAATTTTTGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTCACTGGCCTTTTTCTGATTTTTAAAACCTAAAATTTTTGTTTG  650

seq1  -TTTATAAGTTAGACCTACAAGGAAAACTGTTAATGAAGTTTGGTTTTAT  699
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAGTTAGACCTACAAGGAAAACTGTTAATGAAGTTTGGTTTTAT  700

seq1  ATATAGCTAGAGC-TATT-AAGAATTTTTCTAAAACTAAAACTGTAC-AT  746
      ||||||||||||| |||| |||||||||||||||||||||||||||| ||
seq2  ATATAGCTAGAGCTTATTAAAGAATTTTTCTAAAACTAAAACTGTACAAT  750

seq1  GAGGAAACACTAA-GGGTTAATGATATCCTTTTGGGGGGGGTCC  789
      ||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGGAAACACTAAGGGGTTAATGATATCCTTTTGGGGGGGGTCC  794

seq1: chr12_86520192_86521274
seq2: B6Ng01-245K17.g_65_1173 (reverse)

seq1  CCAATGCAG-ATGACCCC---TCCACA-TTTCC--ATTTG---CACAGAT  40
      ||||||||| |||| |||   ||||||  ||||  |||||   || ||| 
seq2  CCAATGCAGAATGAACCCCTTTCCACACATTCCATATTTGGCACAAAGAA  50

seq1  G-GC-TGC-AGAT-GCTC-ACG-CACT-CCTC-TTCTCCTGC-ATG-AAC  80
      | || ||| |||| |||| ||| |||| |||| ||||| ||| ||| |||
seq2  GAGCATGCAAGATGGCTCAACGACACTCCCTCTTTCTCATGCAATGAAAC  100

seq1  TT-AACCCCTTGGG-TAA--CATCTGGGCTCCCTGTAAGCGCCTTGA-GA  125
      || ||||||||||| |||   ||||| |||||||||||||||||||| ||
seq2  TTAAACCCCTTGGGATAAACAATCTGAGCTCCCTGTAAGCGCCTTGAGGA  150

seq1  GGTCTCTTGTCCCTAAACCTCAGACGCATG-TGTTTTGGTTTGTGGGATG  174
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  GGTCTCTTGTCCCTAAACCTCAGACGCATGTTGTTTTGG-TTGTGGGATG  199

seq1  AATTTGCTAAAGCAGGT-AAGGTAGCAGAAACCAGGAAGACTCCAAAACC  223
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATTTGCTAAAGCAGGTAAAGGTAGCAGAAACCAGGAAGACTCCAAAACC  249

seq1  TCCATGGCACGAGGATAGCTCATCTCC-TTCAGGACAAGTGAACTGACAT  272
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCCATGGCACGAGGATAGCTCATCTCCTTTCAGGACAAGTGAACTGACAT  299

seq1  CTCTGTTCCCGGGTCCTGAGGCCCTACTTCAGGACATGCATGCAACTAAC  322
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCTGTTCCCGGGT-CTGAGGCCCTACTTCAGGACATGCATGCAACTAAC  348

seq1  TTCAAGCTATGGCTTTCATTTTCTGAGTCTGTCTTGCCATCTGCAAAGTA  372
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCTATGGCTTTCATTTTCTGAGTCTGTCTTGCCATCTGCAAAGTA  398

seq1  GGAAGCAACTCAGTAGGGTCGTGGAAACTATAAAGGCACTGTGTGTGTGT  422
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAACTCAGTAGGGTCGTGGAAACTATAAAGGCACTGTGTGTGTGT  448

seq1  GTGTGTGTGTGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGTGAGACA  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGTGAGACA  498

seq1  GAGAGACAGAGAGAGACAGAGAGACAGAGAGACAAAGACAGAGAGACAGA  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAGAGAGAGACAGAGAGACAGAGAGACAAAGACAGAGAGACAGA  548

seq1  GAGACAGAGAGAGAGACAGAGAGACAGAGACAGAGAGACAGAGAGAGACA  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGAGAGAGACAGAGAGACAGAGACAGAGAGACAGAGAGAGACA  598

seq1  GAAAGACAGAGACAGAGACAGAGAGAGAGAGAGAGACAGAGAGAGAGAGA  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACAGAGACAGAGACAGAGAGAGAGAGAGAGACAGAGAGAGAGAGA  648

seq1  CAGAGAGACAGAGAGAGAAGCTAACGGTAGTTCTTGGGCACGGTCTCTAA  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGACAGAGAGAGAAGCTAACGGTAGTTCTTGGGCACGGTCTCTAA  698

seq1  TTCAATTTTGGATTCGTATTTAAAAACTAGAAATACTACAGTTATAGACT  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTTGGATTCGTATTTAAAAACTAGAAATACTACAGTTATAGACT  748

seq1  AGAATCTTTCACAGCACAGAACAAGACAAAAGCAAAATAAGGACTCTATC  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTTTCACAGCACAGAACAAGACAAAAGCAAAATAAGGACTCTATC  798

seq1  CTCTGCCAGTTTGGGAAGAACCAGTGGATACAGGGGTTTGTGCACACTTA  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCAGTTTGGGAAGAACCAGTGGATACAGGGGTTTGTGCACACTTA  848

seq1  AGCACATGCACACACACACACCACCATTCTAGCACGATCCATTCCATCGG  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATGCACACACACACACCACCATTCTAGCACGATCCATTCCATCGG  898

seq1  CTATCCACACAATCCTGGCCATTCACTGTCACTGAGGTCCTTTGAGTAGA  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCACACAATCCTGGCCATTCACTGTCACTGAGGTCCTTTGAGTAGA  948

seq1  TTCACCTGCTGAAAGGATGGCATGGTCCATAGTCCCAGTTCAGCCCTTAG  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTGCTGAAAGGATGGCATGGTCCATAGTCCCAGTTCAGCCCTTAG  998

seq1  CTGCTTATCAATATGTTTGGTGTTGTTTTAAGGGAGAAATGGTATTTATT  1022
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTATCAATATGTTTGGTGTTGTTTTAAGGGAGAAATGGTATTTATT  1048

seq1  GAATACCAATAATATGCCAAGAAACAGCCTGGTGCTTTCAACACCTTAAC  1072
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACCAATAATATGCCAAGAAACAGCCTGGTGCTTTCAACACCTTAAC  1098

seq1  TCATTGAATTC  1083
      |||||||||||
seq2  TCATTGAATTC  1109