BAC Information

Click to search

BAC

Clone NameB6Ng01-246L06
Chromosome12 (Build37)
Map Location 62,486,055 - 62,622,906
singlet/doubletdoublet
Overlap geneLOC665677, Nanog-ps2
Upstream geneLOC665665, Ppia-ps12_475.1, LOC100040300
Downstream geneLrfn5, LOC665699, LOC665707, LOC100040403, LOC665713, LOC622746, LOC100040438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246L06.bB6Ng01-246L06.g
ACCGA055245GA055246
length9711,123
definitionB6Ng01-246L06.b B6Ng01-246L06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,486,055 - 62,487,021)(62,621,800 - 62,622,906)
sequence
gaattcaggtagtaggctaagttcctgtttatctccaatactatcatcct
cagaagtactcttactggaaataaaattcattttcttagattgatttatg
tataataatctccttcttggaggtacataacaagctataacactaatcct
ttagtaagaatatttctgtatgatttcattagcacagatttctatagaaa
aattgccaaattggcaagtttggataacataaatgtttgttcttttcatg
gttctgaagtctgctaagtcaaggatcaataccctggtagatttaatatt
ttttgcaatatgctccttcaacagccacattttaactctatcctcatttg
tctaaatctaattatccattagaattctcatatataccatgtcattggaa
ttagaacatcaaaatgtggaggtgggtaaatctgataatgacagtcagat
tatatagtcagcattaatgggacttaatgagtctgcaaaagagcagaaca
taaaaaatgggtgtatatacaagggaggaagtatctgggagatgaggaga
tgaatatgatcaaaatacaaagcataaaatctcaaataattaattaaaaa
gcacttactcttcctacactaaaatttggaacatgattggcaaaataatt
ttagaatttacatatgtattccctgtataatttctttgtattttaataca
tttttgttactagagaattacatcaaaatcccttctttttcccatttaca
acttcttctcaagtactcatcctccaacttctagtataaccaacctctcg
acttaatggctttttccctttttattattgttattagatgtaatctgtac
ttgcatgcaaaaatatgtaaaacttttatatataacatgctgagtctggt
tgtgtgtgtgtttgtgtttgtggggtgtgtgcgtgcacgtgtgttttcag
gaatgactacttttgtattga

gaattcacatgggcgtgcatattcaggcacacccacgggccctatccaag
tgcgcgcacaggcacccacgcgtaatcaagacccacacagctgccttttg
agagatgaactcagcctggagtactttaagtggtaactgctccagttttc
tcttcccttctctgggctcctctctttgcttccgaccaggttccactcct
gtttatccctgggtggttcgcccctggatttagcaatgcgatctacttgc
tggttatttgattccggaggagcattggctggggctgcgattcccgccgc
gcagtctccaagcatttccgccacatcgccggggctccaggttccagtgc
aagtcttcagcggtagattgcagaactgaaaacgagtttgagcatccaag
catctctcttaacagccaggtgctgaccagtaagattccatacaaatctg
caaaaggactctggaggacaaatacttcagcagacaccatgaagtcctgg
agagtctccacaaaaaccgtgagtgtttctcccgtgtatagtcaaggaag
tggataacccagtattccaagaaatcccaaggtagagccttcacctcaag
gaggaggccacgtctgaaggcacagaagagaaagtgctgctttctggctt
ccctttaaacttggaagctttgtggacttgagggcaagtgatgaaatcgc
cccagcttggactccaggaagatccaaatgagcacttccaagtaggatgt
ggagggtgacttcttttgccttcaggactgtcccacttgctgtcccgctt
agctgaaagaactaagtctcctaataagtatttgtggttcaccaaagtga
acaaagtatatatccaaatattgattcagaatccaaaagacctctgcctc
tctggattgaataacctttcctttctttttcctctttccctttacatttt
tatacccgggaccaaaggtagaggagacttcattgcccaactggggccca
gtttgagatgcttaacagttggggacgaaggccaaaatcagttggggttg
cccttgtcttaatggttgtttagtggtggagaaagatgaccaccaccttt
ttgctgaagtttgggggagtgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_62486055_62487021
seq2: B6Ng01-246L06.b_46_1016

seq1  GAATTCAGGTAGTAGGCTAAGTTCCTGTTTATCTCCAATACTATCATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTAGTAGGCTAAGTTCCTGTTTATCTCCAATACTATCATCCT  50

seq1  CAGAAGTACTCTTACTGGAAATAAAATTCATTTTCTTAGATTGATTTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTACTCTTACTGGAAATAAAATTCATTTTCTTAGATTGATTTATG  100

seq1  TATAATAATCTCCTTCTTGGAGGTACATAACAAGCTATAACACTAATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAATCTCCTTCTTGGAGGTACATAACAAGCTATAACACTAATCCT  150

seq1  TTAGTAAGAATATTTCTGTATGATTTCATTAGCACAGATTTCTATAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAGAATATTTCTGTATGATTTCATTAGCACAGATTTCTATAGAAA  200

seq1  AATTGCCAAATTGGCAAGTTTGGATAACATAAATGTTTGTTCTTTTCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCAAATTGGCAAGTTTGGATAACATAAATGTTTGTTCTTTTCATG  250

seq1  GTTCTGAAGTCTGCTAAGTCAAGGATCAATACCCTGGTAGATTTAATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAAGTCTGCTAAGTCAAGGATCAATACCCTGGTAGATTTAATATT  300

seq1  TTTTGCAATATGCTCCTTCAACAGCCACATTTTAACTCTATCCTCATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAATATGCTCCTTCAACAGCCACATTTTAACTCTATCCTCATTTG  350

seq1  TCTAAATCTAATTATCCATTAGAATTCTCATATATACCATGTCATTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATCTAATTATCCATTAGAATTCTCATATATACCATGTCATTGGAA  400

seq1  TTAGAACATCAAAATGTGGAGGTGGGTAAATCTGATAATGACAGTCAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACATCAAAATGTGGAGGTGGGTAAATCTGATAATGACAGTCAGAT  450

seq1  TATATAGTCAGCATTAATGGGACTTAATGAGTCTGCAAAAGAGCAGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGTCAGCATTAATGGGACTTAATGAGTCTGCAAAAGAGCAGAACA  500

seq1  TAAAAAATGGGTGTATATACAAGGGAGGAAGTATCTGGGAGATGAGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATGGGTGTATATACAAGGGAGGAAGTATCTGGGAGATGAGGAGA  550

seq1  TGAATATGATCAAAATACAAAGCATAAAATCTCAAATAATTAATTAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATGATCAAAATACAAAGCATAAAATCTCAAATAATTAATTAAAAA  600

seq1  GCACTTACTCTTCCTACACTAAAATTTGGAACATGATTGGCAAAATAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTACTCTTCCTACACTAAAATTTGGAACATGATTGGCAAAATAATT  650

seq1  TTAGAATTTACATATGTATTCCCTGTATAATTTCTTTGTATTTTAATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTTACATATGTATTCCCTGTATAATTTCTTTGTATTTTAATACA  700

seq1  TTTTTGTTACTAGAGAATTACATCAAAATCCCTTCTTTTTCCCATTTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTACTAGAGAATTACATCAAAATCCCTTCTTTTTCCCATTTACA  750

seq1  ACTTCTTCTCAAGTACTCATCCTCCAACTTCTAGTATAACCAACCTCTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCTCAAGTACTCATCCTCCAACTTCTAGTATAACCAACCTCTCG  800

seq1  ACTTAATGGCTTTTTCCCTTTTTATTATTGTTATTAGATGTAATCTGTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATGGCTTTTTCCCTTTTTATTATTGTTATTAGATGTAATCTGTAC  850

seq1  TTGCATGCAAAAATATGTAAA--CTTTATATATAACATGCTGAGTCTGGT  898
      |||||||||||||||||||||   ||||||||||||||||||||||||||
seq2  TTGCATGCAAAAATATGTAAAACTTTTATATATAACATGCTGAGTCTGGT  900

seq1  TGTGTGTGTGTTTGTGTTTGT-GGGTGTGTGCGTGCACGTGTGTTTTCAG  947
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTTTGTGTTTGTGGGGTGTGTGCGTGCACGTGTGTTTTCAG  950

seq1  GATTGACTAC-TTTGTATTGA  967
      || ||||||| ||||||||||
seq2  GAATGACTACTTTTGTATTGA  971


seq1: chr12_62621800_62622906
seq2: B6Ng01-246L06.g_67_1189 (reverse)

seq1  ATCACTCCCC--AACTTCAGCCAAAAGGTGGT-GTCATCTTTCT-CACCA  46
      ||||||||||  ||||||||| |||||||||| ||||||||||| |||||
seq2  ATCACTCCCCCAAACTTCAGCAAAAAGGTGGTGGTCATCTTTCTCCACCA  50

seq1  CTAAAC-ACATTTAAGACAAGG--CACCCCAACTGAATTTTGCC-TCGTC  92
      |||||| ||  |||||||||||   ||||||||||| ||| ||| |||||
seq2  CTAAACAACCATTAAGACAAGGGCAACCCCAACTGATTTTGGCCTTCGTC  100

seq1  CCCAACTGTT-AGCATCTTCAACTGG--CCCAGTT-GGCAATG-AGTCTT  137
      |||||||||| |||||||  ||||||  ||||||| ||||||| ||||| 
seq2  CCCAACTGTTAAGCATCTCAAACTGGGCCCCAGTTGGGCAATGAAGTCTC  150

seq1  CTTCTTACCTTTG--TCCGGGTAT-AAAATGTAAA-GGAAAGAGGAAAAA  183
      ||   ||||||||   |||||||| |||||||||| ||||||||||||||
seq2  CT--CTACCTTTGGTCCCGGGTATAAAAATGTAAAGGGAAAGAGGAAAAA  198

seq1  G-AAGGAAA-GTTATTCAATCCAGAGAGGCAGAGGTCTTTTGGATTCTGA  231
      | ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAAGGTTATTCAATCCAGAGAGGCAGAGGTCTTTTGGATTCTGA  248

seq1  ATCAATATTTGGATATATACTTTGTTCACTTTGGTGAACCACAAATACTT  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATATTTGGATATATACTTTGTTCACTTTGGTGAACCACAAATACTT  298

seq1  ATTTAGGAGACTTAGTTCTTTCAGCTAAGCGGGACAGCAAGTGGGACAGT  331
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTAGGAGACTTAGTTCTTTCAGCTAAGCGGGACAGCAAGTGGGACAGT  347

seq1  CCTGAAGGCAAAAGAAGTCACCCTCCACATCCTACTTGGAAGTGCTCATT  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGGCAAAAGAAGTCACCCTCCACATCCTACTTGGAAGTGCTCATT  397

seq1  TGGATCTTCCTGGAGTCCAAGCTGGGGCGATTTCATCACTTGCCCTCAAG  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTTCCTGGAGTCCAAGCTGGGGCGATTTCATCACTTGCCCTCAAG  447

seq1  TCCACAAAGCTTCCAAGTTTAAAGGGAAGCCAGAAAGCAGCACTTTCTCT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAAGCTTCCAAGTTTAAAGGGAAGCCAGAAAGCAGCACTTTCTCT  497

seq1  TCTGTGCCTTCAGACGTGGCCTCCTCCTTGAGGTGAAGGCTCTACCTTGG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCCTTCAGACGTGGCCTCCTCCTTGAGGTGAAGGCTCTACCTTGG  547

seq1  GATTTCTTGGAATACTGGGTTATCCACTTCCTTGACTATACACGGGAGAA  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTGGAATACTGGGTTATCCACTTCCTTGACTATACACGGGAGAA  597

seq1  ACACTCACGGTTTTTGTGGAGACTCTCCAGGACTTCATGGTGTCTGCTGA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACGGTTTTTGTGGAGACTCTCCAGGACTTCATGGTGTCTGCTGA  647

seq1  AGTATTTGTCCTCCAGAGTCCTTTTGCAGATTTGTATGGAATCTTACTGG  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGTCCTCCAGAGTCCTTTTGCAGATTTGTATGGAATCTTACTGG  697

seq1  TCAGCACCTGGCTGTTAAGAGAGATGCTTGGATGCTCAAACTCGTTTTCA  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACCTGGCTGTTAAGAGAGATGCTTGGATGCTCAAACTCGTTTTCA  747

seq1  GTTCTGCAATCTACCGCTGAAGACTTGCACTGGAACCTGGAGCCCCGGCG  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCAATCTACCGCTGAAGACTTGCACTGGAACCTGGAGCCCCGGCG  797

seq1  ATGTGGCGGAAATGCTTGGAGACTGCGCGGCGGGAATCGCAGCCCCAGCC  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCGGAAATGCTTGGAGACTGCGCGGCGGGAATCGCAGCCCCAGCC  847

seq1  AATGCTCCTCCGGAATCAAATAACCAGCAAGTAGATCGCATTGCTAAATC  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCCTCCGGAATCAAATAACCAGCAAGTAGATCGCATTGCTAAATC  897

seq1  CAGGGGCGAACCACCCAGGGATAAACAGGAGTGGAACCTGGTCGGAAGCA  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCGAACCACCCAGGGATAAACAGGAGTGGAACCTGGTCGGAAGCA  947

seq1  AAGAGAGGAGCCCAGAGAAGGGAAGAGAAAACTGGAGCAGTTACCACTTA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGAGCCCAGAGAAGGGAAGAGAAAACTGGAGCAGTTACCACTTA  997

seq1  AAGTACTCCAGGCTGAGTTCATCTCTCAAAAGGCAGCTGTGTGGGTCTTG  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTCCAGGCTGAGTTCATCTCTCAAAAGGCAGCTGTGTGGGTCTTG  1047

seq1  ATTACGCGTGGGTGCCTGTGCGCGCACTTGGATAGGGCCCGTGGGTGTGC  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACGCGTGGGTGCCTGTGCGCGCACTTGGATAGGGCCCGTGGGTGTGC  1097

seq1  CTGAATATGCACGCCCATGTGAATTC  1107
      ||||||||||||||||||||||||||
seq2  CTGAATATGCACGCCCATGTGAATTC  1123


| Home | SequenceCutter | Blast | Download |