BAC Information

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BAC

Clone NameB6Ng01-247D04
Chromosome12 (Build37)
Map Location 35,070,736 - 35,231,090
singlet/doubletdoublet
Overlap geneHdac9
Upstream gene4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1
Downstream gene4921508M14Rik, Prps1l1, Snx13, Ahr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247D04.bB6Ng01-247D04.g
ACCGA055597GA055598
length1,1431,132
definitionB6Ng01-247D04.b B6Ng01-247D04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,070,736 - 35,071,888)(35,229,954 - 35,231,090)
sequence
gaattctcttttctttaaagctgcctcattagttgctggaagacactgca
ataaaaattttgtatttctggtagcccttgatcatttatatcataattat
aagaggcaaataatcttgggaggcacaaatatcccatgtgaatggcactg
aaacagagacaatggctagttaactcaccaggtaggattaataatattat
actatgcatttcataggttttgcaaaaattcagtgaaaaactgcatacca
agtacataaagtagaggttccttctaaactttctaaggattattgacaat
tcaaacatatcgttcaagtttttttgtttgtttgtttgtttgtttgtttt
taccatggaggccaactattgaactcagtactggtttagacatagtctta
actaaaaaaaacaaaacaaaacaaacttattacccttacttatgtgctat
gtagcctgtgtatatgggtatgagtatgcatacacgtggaggtcagagaa
caacgtgtggggggtccgttctctccctgtatcacgtggtttcttggaac
taactcagatcatcaggtgtgatggcaagcatacttaagtggctcacctt
gacagcctggatatctttaactaggttctcactttatacttttttctcta
aggactcaaggggaaaaggagctataaaatgctaagagtcttaaaggaaa
agatatttttagcatgccatttgcacacctacattttcacatatgctttt
tttcctgttatgactgctcatgagtgaggaccatgatctgaggatgccaa
ctgtctcctgcagttggagagaattacatcaaggttcatctatgataata
gaaaatgacaaaatttctatgcttatttcttactaataaccattctaatg
aaatggacagaatacaatagacatattctcatgcagaaacttagtaactc
ttggcgtttaaggcatagccataacccaataaaaagtaaatatccttatc
tccttagaagaacgtgagcagtagtactcacttactgctgttctgtagga
aacacttcaaaacacaataacagttcatatttcatagtagtttttcttca
tttccttacacaatggaagacggctaaaatatttcgaatccag

gaattcatctctgatattttttacctggaagattgcttgtttccagaaac
atgattttattctcctttctattttcactactttattgacagctaacatt
ttatgatttttgtctgaaataaaagcaaattgatataagtttcaaacatg
ctagttaaatagctactgtagaccgtcctcaactcatggcaatgtggctt
atgattttacttcatgacaacatgaaactagtatgtgcttaatagaaagt
gtactttgaaggctgagtatttgtcctttcctgggctaacaatatgtaga
agatgctttctcagcctcagacgcacagctcgcagtcagccacgtgaata
ctaaagtatcaggcagtgttccacagtgtatttagcagtggttcaataga
catgcataagtaaatgtgctgtcctcttgcaatgtttgcaatttatgaca
gggtttacagggaggaaccacacccaaggcaatgagagtctgcacttctg
gatcaagtactatggaacaaagagtttgttttaggcatctttaagttgtc
ataggtattaatgatttttacaggcaaactgaaagagggtgactttgcag
gtgagacagttagggtgccttatcatcagagctaaggccacatcctgggt
ttcttcctgtcagacactgtcctctctttaacacataagaagtagaaact
catatgtaatctgagtcagtaggaaggacagacagacagcctgatcccag
ggaggaggtgccaactttctctggctttcccccctaaactcctgatttac
caggcactttttggaaaagatggattgtctggtcagaaagacagatatta
attagctggacctggaggaggtgtttgatggtatggtgacctaagttgaa
tacctgccacttgtcctgctgggaaaggaggaaaggaaacaaggaagttt
tcagaactcagtccagtttgctataatatatgatctggaacaaaaagaaa
aaccactgctgtctctaaatagaaatataattgtgtaaattaatgtcagg
ttatatggattatgaaaaacaggaggattaaaattacaagcacaactttc
agttagacggagaagagatccttcgtggtgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_35070736_35071888
seq2: B6Ng01-247D04.b_49_1191

seq1  GAATTCTCTTTTCTTTAAAGCTGCCTCATTAGTTGCTGGAAGACACTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTTCTTTAAAGCTGCCTCATTAGTTGCTGGAAGACACTGCA  50

seq1  ATAAAAATTTTGTATTTCTGGTAGCCCTTGATCATTTATATCATAATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATTTTGTATTTCTGGTAGCCCTTGATCATTTATATCATAATTAT  100

seq1  AAGAGGCAAATAATCTTGGGAGGCACAAATATCCCATGTGAATGGCACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCAAATAATCTTGGGAGGCACAAATATCCCATGTGAATGGCACTG  150

seq1  AAACAGAGACAATGGCTAGTTAACTCACCAGGTAGGATTAATAATATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGACAATGGCTAGTTAACTCACCAGGTAGGATTAATAATATTAT  200

seq1  ACTATGCATTTCATAGGTTTTGCAAAAATTCAGTGAAAAACTGCATACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCATTTCATAGGTTTTGCAAAAATTCAGTGAAAAACTGCATACCA  250

seq1  AGTACATAAAGTAGAGGTTCCTTCTAAACTTTCTAAGGATTATTGACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATAAAGTAGAGGTTCCTTCTAAACTTTCTAAGGATTATTGACAAT  300

seq1  TCAAACATATCGTTCAAGTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACATATCGTTCAAGTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTT  350

seq1  TACCATGGAGGCCAACTATTGAACTCAGTACTGGTTTAGACATAGTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGGAGGCCAACTATTGAACTCAGTACTGGTTTAGACATAGTCTTA  400

seq1  ACTAAAAAAAACAAAACAAAACAAACTTATTACCCTTACTTATGTGCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAAAAACAAAACAAAACAAACTTATTACCCTTACTTATGTGCTAT  450

seq1  GTAGCCTGTGTATATGGGTATGAGTATGCATACACGTGGAGGTCAGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTGTGTATATGGGTATGAGTATGCATACACGTGGAGGTCAGAGAA  500

seq1  CAACGTGTGGGGGGTCCGTTCTCTCCCTGTATCACGTGGTTTCTTGGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTGTGGGGGGTCCGTTCTCTCCCTGTATCACGTGGTTTCTTGGAAC  550

seq1  TAACTCAGATCATCAGGTGTGATGGCAAGCATACTTAAGTGGCTCACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCAGATCATCAGGTGTGATGGCAAGCATACTTAAGTGGCTCACCTT  600

seq1  GACAGCCTGGATATCTTTAACTAGGTTCTCACTTTATACTTTTTTCTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCTGGATATCTTTAACTAGGTTCTCACTTTATACTTTTTTCTCTA  650

seq1  AGGACTCAAGGGGAAAAGGAGCTATAAAATGCTAAGAGTCTTAAAGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCAAGGGGAAAAGGAGCTATAAAATGCTAAGAGTCTTAAAGGAAA  700

seq1  AGATATTTTTAGCATGCCATTTGCACACCTACATTTTCACATATGCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTTTAGCATGCCATTTGCACACCTACATTTTCACATATGCTTTT  750

seq1  TTTCCTGTTATGACTGCTCATGAGTGAGGACCATGATCTGAGGATGCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTTATGACTGCTCATGAGTGAGGACCATGATCTGAGGATGCCAA  800

seq1  CTGTCTCCTGCAGTTGGAGAGAATTACATCAAGGTTCATCTATGATAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCTGCAGTTGGAGAGAATTACATCAAGGTTCATCTATGATAATA  850

seq1  GAAAATGACAAAATTTCTATGCTTATTTCTTACTAATAACCATTCTAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGACAAAATTTCTATGCTTATTTCTTACTAATAACCATTCTAATG  900

seq1  AAATGGACAGAATACAATAGACATATTCTCATGCAGAAACTTAGTAACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGACAGAATACAATAGACATATTCTCATGCAGAAACTTAGTAACTC  950

seq1  TTGGCGTTTAAGGCATAGCCATAACCCAATAAAAAGTAAATATCCTTATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCGTTTAAGGCATAGCCATAACCCAATAAAAAGTAAATATCCTTATC  1000

seq1  TCCTTAGAAGAAGGGTGAGCAGTAGTAACTCACTTACTGCTGGTTCTGTA  1050
      ||||||||||||  |||||||||||| |||||||||||||| ||||||||
seq2  TCCTTAGAAGAA-CGTGAGCAGTAGT-ACTCACTTACTGCT-GTTCTGTA  1047

seq1  GGAAACACTTCAAAACACAATACAGGTTCAATATTTCCATTAGTAAGGTT  1100
      ||||||||||||||||||||||   |||| |||||||   |||||  |||
seq2  GGAAACACTTCAAAACACAATAACAGTTC-ATATTTC--ATAGTA--GTT  1092

seq1  TTTCTCCATTTCCTTACACAATTGAAGACAGCTAAAATATTTTCAAAATC  1150
      ||||| |||||||||||||||| |||||| ||||||||||||    ||||
seq2  TTTCTTCATTTCCTTACACAATGGAAGACGGCTAAAATATTT--CGAATC  1140

seq1  CAG  1153
      |||
seq2  CAG  1143


seq1: chr12_35229954_35231090
seq2: B6Ng01-247D04.g_70_1201 (reverse)

seq1  AGCACCACGAAGGATCTCTCTTCCCGTTCTTACTGAAGGTTGTGCCTGTA  50
      ||||||||||||||  ||||||| |  ||| |||||| ||||||| ||||
seq2  AGCACCACGAAGGA--TCTCTTCTCCGTCTAACTGAAAGTTGTGCTTGTA  48

seq1  TTTTTAAT-CTTCTGTTTTTCATA--TCATATAAACTGACATTAATTTAC  97
       ||||||| || ||||||||||||   ||||||| |||||||||||||||
seq2  ATTTTAATCCTCCTGTTTTTCATAATCCATATAACCTGACATTAATTTAC  98

seq1  ACAAATTATATTTCCTATTTAGAGACAGCAGTTGGTTTTTCTTTTTTGTT  147
      || |||||||||| ||||||||||||||||| ||||||||| ||||||||
seq2  AC-AATTATATTT-CTATTTAGAGACAGCAG-TGGTTTTTC-TTTTTGTT  144

seq1  CCAGATCATATATTATAGCAAACTGGACTGAGTTTCTGAAAACTTCCTTT  197
      |||||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  CCAGATCATATATTATAGCAAACTGGACTGAG-TTCTGAAAACTTCC-TT  192

seq1  GTTTCCTTTCCTCCTTTCCCAGCAGGACAAGTGGCAGGTATTCAACTTAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTTCCTCCTTTCCCAGCAGGACAAGTGGCAGGTATTCAACTTAG  242

seq1  GTCACCATACCATCAAACACCTCCTCCAGGTCCAGCTAATTAATATCTGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCATACCATCAAACACCTCCTCCAGGTCCAGCTAATTAATATCTGT  292

seq1  CTTTCTGACCAGACAATCCATCTTTTCCAAAAAGTGCCTGGTAAATCAGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGACCAGACAATCCATCTTTTCCAAAAAGTGCCTGGTAAATCAGG  342

seq1  AGTTTAGGGGGGAAAGCCAGAGAAAGTTGGCACCTCCTCCCTGGGATCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGGGGGGAAAGCCAGAGAAAGTTGGCACCTCCTCCCTGGGATCAG  392

seq1  GCTGTCTGTCTGTCCTTCCTACTGACTCAGATTACATATGAGTTTCTACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTGTCTGTCCTTCCTACTGACTCAGATTACATATGAGTTTCTACT  442

seq1  TCTTATGTGTTAAAGAGAGGACAGTGTCTGACAGGAAGAAACCCAGGATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGTGTTAAAGAGAGGACAGTGTCTGACAGGAAGAAACCCAGGATG  492

seq1  TGGCCTTAGCTCTGATGATAAGGCACCCTAACTGTCTCACCTGCAAAGTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTAGCTCTGATGATAAGGCACCCTAACTGTCTCACCTGCAAAGTC  542

seq1  ACCCTCTTTCAGTTTGCCTGTAAAAATCATTAATACCTATGACAACTTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTTTCAGTTTGCCTGTAAAAATCATTAATACCTATGACAACTTAA  592

seq1  AGATGCCTAAAACAAACTCTTTGTTCCATAGTACTTGATCCAGAAGTGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCTAAAACAAACTCTTTGTTCCATAGTACTTGATCCAGAAGTGCA  642

seq1  GACTCTCATTGCCTTGGGTGTGGTTCCTCCCTGTAAACCCTGTCATAAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCATTGCCTTGGGTGTGGTTCCTCCCTGTAAACCCTGTCATAAAT  692

seq1  TGCAAACATTGCAAGAGGACAGCACATTTACTTATGCATGTCTATTGAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACATTGCAAGAGGACAGCACATTTACTTATGCATGTCTATTGAAC  742

seq1  CACTGCTAAATACACTGTGGAACACTGCCTGATACTTTAGTATTCACGTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTAAATACACTGTGGAACACTGCCTGATACTTTAGTATTCACGTG  792

seq1  GCTGACTGCGAGCTGTGCGTCTGAGGCTGAGAAAGCATCTTCTACATATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTGCGAGCTGTGCGTCTGAGGCTGAGAAAGCATCTTCTACATATT  842

seq1  GTTAGCCCAGGAAAGGACAAATACTCAGCCTTCAAAGTACACTTTCTATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCCCAGGAAAGGACAAATACTCAGCCTTCAAAGTACACTTTCTATT  892

seq1  AAGCACATACTAGTTTCATGTTGTCATGAAGTAAAATCATAAGCCACATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATACTAGTTTCATGTTGTCATGAAGTAAAATCATAAGCCACATT  942

seq1  GCCATGAGTTGAGGACGGTCTACAGTAGCTATTTAACTAGCATGTTTGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAGTTGAGGACGGTCTACAGTAGCTATTTAACTAGCATGTTTGAA  992

seq1  ACTTATATCAATTTGCTTTTATTTCAGACAAAAATCATAAAATGTTAGCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATATCAATTTGCTTTTATTTCAGACAAAAATCATAAAATGTTAGCT  1042

seq1  GTCAATAAAGTAGTGAAAATAGAAAGGAGAATAAAATCATGTTTCTGGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATAAAGTAGTGAAAATAGAAAGGAGAATAAAATCATGTTTCTGGAA  1092

seq1  ACAAGCAATCTTCCAGGTAAAAAATATCAGAGATGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAATCTTCCAGGTAAAAAATATCAGAGATGAATTC  1132


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